VILL

General Information

Gene Name       : VILL
Gene ID             : ENSG00000136059.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VILL)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VILLENSG00000136059.140.260.960.61ENCSR000AEF
HepG2VILLENSG00000136059.141.980.711.34ENCSR985KAT
K562VILLENSG00000136059.146.306.586.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VILL is not avaliable on ENCORE database.



Proteins bound to RNA
  • VILL RNA is bound by 10 proteins.  







eCLIP assay for VILL is not avaliable on ENCORE database.





10 proteins are bound to VILL RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr33804287038042971+3'-UTR,CDS,intron-Proximal5.577078.88118K562AQR
chr33804289738042949+3'-UTR,CDS,intron-Proximal5.311916.40247K562SF3B4
chr33804725438047287+CDS,intron-Proximal3.252914.64824K562PRPF8
chr33803975638039843+CDS,intron-Distal,intron-Proximal4.372204.49756K562BUD13
chr33804717838047302+CDS,intron-Distal,intron-Proximal3.549417.02925K562AQR
chr33803855338038664+CDS,intron-Distal,intron-Proximal3.391473.01994K562BUD13
chr33804092838041001+CDS,intron-Proximal5.199635.65342K562AQR
chr33804774138047785+CDS,intron-Proximal4.699634.65563K562AQR
chr33804662238046721+intron-Distal5.7164918.73721K562EIF4G2
chr33804129738041382+intron-Distal4.5283711.90341K562HNRNPL
chr33804514838045256+intron-Distal4.951306.75032K562TARDBP
chr33804123738041292+intron-Distal3.607635.57675K562HNRNPL
chr33804716438047205+intron-Distal,intron-Proximal3.646904.65797K562TARDBP
chr33804595238046027+intron-Distal,intron-Proximal6.8917621.92335K562EIF4G2
chr33804266338042722+intron-Distal3.848483.80954K562HNRNPL
chr33804707038047126+intron-Distal4.230526.94220K562TARDBP
chr33804129938041384+intron-Distal3.4936510.87225K562AGGF1
chr33804595138046011+intron-Distal,intron-Proximal4.5048411.61021K562TARDBP
chr33804611438046255+intron-Distal5.3178917.72170K562TARDBP
chr33804714438047253+intron-Distal,intron-Proximal4.5982531.69411K562EIF4G2
chr33804649238046503+intron-Distal4.466903.34609K562TARDBP
chr33804138238041428+intron-Distal4.841234.70117K562HNRNPL
chr33804672138046815+intron-Distal5.6853221.43267K562EIF4G2
chr33804122738041299+intron-Distal4.4593515.85284K562AGGF1
chr33804627738046345+intron-Distal4.678369.77133K562TARDBP
chr33804663438046705+intron-Distal5.6617711.85065K562TARDBP
chr33804102638041157+intron-Distal,intron-Proximal4.0420410.83920K562HNRNPL
chr33804605038046114+intron-Distal5.353968.89278K562TARDBP
chr33804638538046463+intron-Distal3.466907.47441K562TARDBP
chr33804658138046603+intron-Distal5.514928.53131K562EIF4G2
chr33803920638039250+intron-Distal,intron-Proximal4.646214.96013K562PRPF8
chr33804116438041227+intron-Distal4.0908715.17607K562AGGF1
chr33804595538046021+intron-Distal,intron-Proximal3.810836.06472K562AQR
chr33804115738041237+intron-Distal4.3210812.82178K562HNRNPL
chr33804521938045263+intron-Distal4.510848.03551K562EIF4G2
chr33804094038041164+intron-Distal,intron-Proximal3.2540613.63827K562AGGF1
chr33804613738046241+intron-Distal7.4699939.23079K562EIF4G2
chr33804606038046104+intron-Distal5.9131611.07188K562EIF4G2
chr33804594538046021+intron-Distal,intron-Proximal4.730336.35323K562RBFOX2
chr33804653838046634+intron-Distal4.9669019.56462K562TARDBP
chr33804612238046194+intron-Distal4.252223.06537K562RBFOX2
chr33804819138048259+intron-Proximal4.672064.86944K562AQR
chr33804568938045735+intron-Proximal5.478788.52451K562EIF4G2
chr33804285738042940+intron-Proximal4.285633.19482K562AKAP8L
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VILL is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VILL is not available on ENCORE database.

  • 46 RBPs can affect the levels of VILL.  








The Knockdown/knockout RNA-Seq assay for VILL is not available on ENCORE database.





46 RBPs can affect the gene expression of VILL :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VILLENSG00000136059.1047.2822016.904901.483802.696001.60540HepG2CPSF7
VILLENSG00000136059.1063.5641029.412501.111702.957502.29670HepG2CELF1
VILLENSG00000136059.1025.5489060.54400-1.244702.725802.10320HepG2DDX3X
VILLENSG00000136059.10202.3209052.025401.9593013.0744011.85130HepG2DDX6
VILLENSG00000136059.1011.6251042.80820-1.880603.858002.93840HepG2FUBP3
VILLENSG00000136059.1018.0695051.71580-1.517103.351702.62410HepG2G3BP1
VILLENSG00000136059.1015.944801.353303.558402.445601.84000HepG2GPKOW
VILLENSG00000136059.1039.8867011.380101.809303.118802.43850HepG2HNRNPA1
VILLENSG00000136059.1021.586204.310202.324202.899902.16700HepG2HNRNPF
VILLENSG00000136059.1035.8294012.576001.510402.723302.12130HepG2HNRNPU
VILLENSG00000136059.1021.435104.244202.336302.819702.08800HepG2IGF2BP1
VILLENSG00000136059.1020.9308052.56340-1.328402.768202.09290HepG2IGF2BP2
VILLENSG00000136059.1031.4556011.216501.487602.416401.72400HepG2PPIL4
VILLENSG00000136059.108.6374043.06290-2.317804.560703.93900HepG2RBM22
VILLENSG00000136059.1030.2006060.62010-1.005201.999201.52330HepG2NELFE
VILLENSG00000136059.1076.6171028.704401.416304.964104.06660HepG2SLBP
VILLENSG00000136059.1015.216701.421903.419702.407401.68080HepG2SNRNP70
VILLENSG00000136059.106.7972048.64160-2.839206.794406.10610HepG2SRFBP1
VILLENSG00000136059.103.1608059.19100-4.2270012.0428011.20490HepG2SRSF1
VILLENSG00000136059.1014.1876042.23880-1.573902.531802.03590HepG2SSB
VILLENSG00000136059.1013.3382053.21880-1.996404.190103.52170HepG2TAF15
VILLENSG00000136059.105.0326025.36790-2.333602.948501.84630HepG2TBRG4
VILLENSG00000136059.1018.9540048.88420-1.366902.963902.10170HepG2TIA1
VILLENSG00000136059.1075.6073012.329602.6163010.786109.78200HepG2TRIM56
VILLENSG00000136059.1031.712506.971102.185503.543302.68750HepG2UCHL5
VILLENSG00000136059.102.4619016.55290-2.749202.311801.69060HepG2ZC3H8
VILLENSG00000136059.10516.32720339.365500.605305.963105.05850K562DDX47
VILLENSG00000136059.10419.36590255.938500.712303.590402.54110K562EFTUD2
VILLENSG00000136059.10592.76000436.075400.442803.768002.95090K562EIF2S2
VILLENSG00000136059.10226.01080143.374600.656503.390802.51600K562EIF3G
VILLENSG00000136059.1026.04700105.56420-2.018908.759107.35310K562G3BP2
VILLENSG00000136059.10406.33820256.609000.663003.782902.07760K562GEMIN5
VILLENSG00000136059.10553.27380423.598500.385202.538801.50910K562HNRNPA1
VILLENSG00000136059.10413.40400306.697100.430602.526101.52080K562HNRNPL
VILLENSG00000136059.10616.67250469.104700.394503.077402.13780K562HNRNPU
VILLENSG00000136059.10500.76670270.118400.890408.012006.67330K562HSPD1
VILLENSG00000136059.10284.74940207.827300.454202.314601.47700K562MATR3
VILLENSG00000136059.10395.25680561.87240-0.507503.717102.63690K562MBNL1
VILLENSG00000136059.10364.11230282.065700.368302.173801.45230K562MTPAP
VILLENSG00000136059.10414.44890313.352100.403302.877702.11850K562NSUN2
VILLENSG00000136059.10324.67260238.436700.445302.147901.44260K562POLR2G
VILLENSG00000136059.10329.46660468.74640-0.508703.040902.47610K562PUS1
VILLENSG00000136059.10202.31340109.692500.883005.255504.05530K562SF3B4
VILLENSG00000136059.10503.59060251.262601.003004.746002.84920K562SFPQ
VILLENSG00000136059.10118.66910198.37330-0.741303.614702.81430K562SRSF1
VILLENSG00000136059.10288.39820193.649400.574503.128702.24980K562TIA1
VILLENSG00000136059.10282.62270192.949600.550602.416001.54450K562TIAL1
VILLENSG00000136059.1057.81160102.24090-0.822502.371001.37000K562U2AF1
VILLENSG00000136059.10496.27450332.257700.578705.597204.61450K562UPF1
VILLENSG00000136059.10482.95500295.677900.707805.641704.47640K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VILL is not available on ENCORE database.





8 RBPs can affect the splicing of VILL :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVILLENSG00000136059.10chr3+380446583804480438043886380440663804574538045890-0.209000.003290.08209excludedK562UTP18
SEVILLENSG00000136059.10chr3+3804599038046119380423973804589038047282380474650.942000.000000.00000includedK562TARDBP
RIVILLENSG00000136059.10chr3+380476713804819138047671380477433804793938048191-0.121000.001470.07975excludedHepG2DDX6
RIVILLENSG00000136059.10chr3+3804767138048191380476713804774338047939380481910.412000.004100.02633includedK562PUS1
RIVILLENSG00000136059.10chr3+380476713804819138047671380477433804793938048191-0.354000.000000.00039excludedK562TROVE2
RIVILLENSG00000136059.10chr3+3804767138048191380476713804774338047939380481910.279000.011780.09069includedK562EFTUD2
RIVILLENSG00000136059.10chr3+3804767138048191380476713804774338047939380481910.301000.004500.02617includedK562AQR
MXEVILLENSG00000136059.10chr3+38043886380440663804465838044804380431923804335138045745380458900.243000.000000.002941includedK562SRSF7

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VILL is not avaliable on ENCORE database.