ASIC4

General Information

Gene Name       : ASIC4
Gene ID             : ENSG00000072182.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ASIC4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ASIC4ENSG00000072182.120.000.010.01ENCSR000AEF
HepG2ASIC4ENSG00000072182.120.020.000.01ENCSR985KAT
K562ASIC4ENSG00000072182.123.643.233.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ASIC4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ASIC4 RNA is bound by 24 proteins.  







eCLIP assay for ASIC4 is not avaliable on ENCORE database.





24 proteins are bound to ASIC4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2220402924220402991+3'-UTR4.284046.21733K562PUM2
chr2220403152220403237+3'-UTR3.7880211.06562K562UCHL5
chr2220403359220403445+3'-UTR3.151113.47856K562LSM11
chr2220402851220402901+3'-UTR4.733435.55733K562BUD13
chr2220403128220403259+3'-UTR5.6710521.87517K562PABPC4
chr2220403225220403281+3'-UTR5.0416211.90237K562DDX6
chr2220403115220403307+3'-UTR3.0426310.26079K562RBFOX2
chr2220403138220403237+3'-UTR3.4442216.44578K562ZC3H11A
chr2220403154220403202+3'-UTR4.0774320.85702K562DDX55
chr2220403385220403444+3'-UTR3.621757.75987K562PRPF8
chr2220403123220403272+3'-UTR5.0508817.77184K562GTF2F1
chr2220403142220403231+3'-UTR5.080917.92414K562WDR43
chr2220403139220403212+3'-UTR5.3428453.55882K562DDX6
chr2220403090220403148+3'-UTR4.474064.96821K562PUM2
chr2220403141220403273+3'-UTR4.9731813.35513K562UPF1
chr2220403140220403154+3'-UTR3.785586.81514K562DDX55
chr2220403140220403230+3'-UTR3.237664.32167K562AKAP8L
chr2220403143220403215+3'-UTR4.410317.81718K562LSM11
chr2220403121220403278+3'-UTR3.6302317.65051K562DROSHA
chr2220401999220402043+CDS3.639895.65306K562ZNF622
chr2220399889220399939+CDS,intron-Proximal3.137115.48629K562BUD13
chr2220397036220397051+CDS,intron-Proximal3.857873.11168K562ZNF622
chr2220402437220402472+CDS,intron-Proximal3.047454.08654K562BUD13
chr2220402638220402722+CDS,intron-Proximal3.762147.72862K562BUD13
chr2220396782220396851+CDS,intron-Proximal3.324664.74755K562ZNF622
chr2220399831220399948+CDS,intron-Proximal4.7549810.42818K562SF3B4
chr2220402421220402500+CDS,intron-Proximal3.385648.67013K562DDX24
chr2220397533220397617+CDS,intron-Distal,intron-Proximal3.241366.26405K562RBFOX2
chr2220402429220402495+CDS,intron-Proximal4.994584.55944K562ZNF622
chr2220402635220402692+CDS,intron-Proximal3.462498.81217K562PRPF8
chr2220402457220402461+CDS,intron-Proximal6.71981400.00000K562AQR
chr2220402353220402506+CDS,intron-Proximal3.225919.99264K562UCHL5
chr2220402359220402391+CDS5.6363568.95648K562AQR
chr2220402669220402711+CDS5.6333758.86951K562AQR
chr2220402654220402669+CDS,intron-Proximal6.0682067.68820K562AQR
chr2220402350220402429+CDS,intron-Proximal3.396185.89932K562ZNF622
chr2220402354220402359+CDS5.5488163.31941K562AQR
chr2220401956220402009+CDS,intron-Proximal4.056816.34541K562BUD13
chr2220402457220402463+CDS,intron-Proximal4.4316911.97787K562PRPF8
chr2220379413220379451+CDS4.409844.07072K562UCHL5
chr2220397438220397501+intron-Distal3.201746.90514K562RBFOX2
chr2220397311220397425+intron-Distal5.5436712.37862K562TARDBP
chr2220400102220400430+intron-Distal,intron-Proximal5.7156513.16698K562TARDBP
chr2220397849220397913+intron-Distal4.744837.00425K562RBFOX2
chr2220397538220397565+intron-Distal,intron-Proximal3.837875.28701K562PRPF8
chr2220381674220381725+intron-Distal4.713813.48173K562GTF2F1
chr2220402090220402147+intron-Distal,intron-Proximal7.1430984.80320K562AQR
chr2220381901220381962+intron-Distal4.033733.80512K562CSTF2T
chr2220400969220401053+intron-Distal5.4293712.89962K562EIF4G2
chr2220397451220397529+intron-Distal,intron-Proximal5.455239.16624K562TARDBP
chr2220402226220402268+intron-Distal,intron-Proximal4.296203.96990K562BUD13
chr2220397340220397402+intron-Distal4.619134.79321K562RBFOX2
chr2220400218220400274+intron-Distal6.125359.02011K562EIF4G2
chr2220401380220401432+intron-Distal3.793003.47685K562EIF4G2
chr2220382358220382418+intron-Distal4.130054.48935K562CSTF2T
chr2220385536220385634+intron-Distal4.270534.04290K562CSTF2T
chr2220400346220400445+intron-Distal7.4537621.92335K562EIF4G2
chr2220400358220400412+intron-Distal4.520623.17679K562DDX52
chr2220397858220397911+intron-Distal4.120684.00200K562EIF4G2
chr2220401326220401372+intron-Distal4.583435.80675K562EIF4G2
chr2220397873220397941+intron-Distal3.474718.28777K562PRPF8
chr2220382512220382578+intron-Distal4.067293.80512K562CSTF2T
chr2220397539220397597+intron-Distal,intron-Proximal3.717003.47685K562EIF4G2
chr2220398106220398172+intron-Distal4.643597.80986K562PRPF8
chr2220397681220397702+intron-Distal,intron-Proximal3.455628.04398K562AQR
chr2220397969220398024+intron-Distal3.165276.09777K562PRPF8
chr2220380812220380955+intron-Distal5.162066.09580K562HNRNPL
chr2220402043220402045+intron-Proximal7.2018850.08254K562AQR
chr2220402472220402508+intron-Proximal3.702735.48629K562BUD13
chr2220402463220402511+intron-Proximal4.4890013.71144K562PRPF8
chr2220402085220402090+intron-Proximal6.3503042.18762K562AQR
chr2220402627220402634+intron-Proximal6.6348118.62356K562AQR
chr2220402634220402654+intron-Proximal6.6449157.96634K562AQR
chr2220402494220402501+intron-Proximal7.39116125.55680K562AQR
chr2220402094220402141+intron-Proximal4.057984.25142K562BUD13
chr2220397213220397238+intron-Proximal4.395796.48405K562AQR
chr2220402094220402138+intron-Proximal4.127146.35873K562PRPF8
chr2220402053220402070+intron-Proximal3.639914.35635K562PRPF8
chr2220402045220402085+intron-Proximal7.3879588.64860K562AQR
chr2220402461220402494+intron-Proximal6.89015400.00000K562AQR
chr2220402320220402353+intron-Proximal6.7516072.40770K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ASIC4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ASIC4 is not available on ENCORE database.

  • 72 RBPs can affect the levels of ASIC4.  








The Knockdown/knockout RNA-Seq assay for ASIC4 is not available on ENCORE database.





72 RBPs can affect the gene expression of ASIC4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ASIC4ENSG00000072182.810.262300.0000099999.999902.375801.87840HepG2AKAP1
ASIC4ENSG00000072182.816.508400.0000099999.999903.648202.77450HepG2DDX55
ASIC4ENSG00000072182.811.060100.0000099999.999902.842902.20420HepG2MATR3
ASIC4ENSG00000072182.863.67430194.81110-1.6133010.644808.35990K562AARS
ASIC4ENSG00000072182.8461.04930315.501500.547203.982302.75940K562AKAP8
ASIC4ENSG00000072182.8413.90570298.752100.470302.861502.19730K562AKAP8L
ASIC4ENSG00000072182.8850.36870567.011200.584605.565703.71790K562APOBEC3C
ASIC4ENSG00000072182.8879.06270521.219400.754007.840906.93710K562AQR
ASIC4ENSG00000072182.8329.28890181.459000.859602.267601.48410K562BOP1
ASIC4ENSG00000072182.8535.80750265.283501.014109.696007.08710K562BUD13
ASIC4ENSG00000072182.8303.55170189.797100.677404.166202.81590K562CCAR1
ASIC4ENSG00000072182.8497.46550340.713700.545903.208501.63900K562CKAP4
ASIC4ENSG00000072182.8813.12530278.528801.5456014.9672012.58290K562CNOT7
ASIC4ENSG00000072182.8398.05920202.871700.972305.069002.49870K562CPSF7
ASIC4ENSG00000072182.8847.83850528.072100.683008.987206.80220K562DDX21
ASIC4ENSG00000072182.8707.82750383.310300.8848014.3161012.94890K562DDX47
ASIC4ENSG00000072182.8363.02420212.499600.772505.457003.46100K562DHX30
ASIC4ENSG00000072182.8203.34220321.45800-0.660704.496703.34240K562DKC1
ASIC4ENSG00000072182.8310.51480204.087300.605403.489301.96690K562DNAJC21
ASIC4ENSG00000072182.8532.28660258.612701.041306.116504.20510K562EEF2
ASIC4ENSG00000072182.8729.78400249.770401.5468023.4040020.29250K562EFTUD2
ASIC4ENSG00000072182.8213.75030138.910600.621702.886402.07480K562EIF3G
ASIC4ENSG00000072182.81040.95120642.599500.6958010.641408.84660K562EIF4G2
ASIC4ENSG00000072182.8446.19230270.540500.721706.409204.44300K562EXOSC5
ASIC4ENSG00000072182.8284.73200166.453200.774403.499902.46330K562FTO
ASIC4ENSG00000072182.828.23800105.17320-1.897107.966106.64060K562G3BP2
ASIC4ENSG00000072182.8514.77920359.176900.519204.231502.83230K562GLRX3
ASIC4ENSG00000072182.8386.89290184.149601.071006.874705.62170K562GPKOW
ASIC4ENSG00000072182.81167.22590615.113100.9241010.001008.54000K562GRSF1
ASIC4ENSG00000072182.8733.45020415.853100.8185010.450108.54440K562HNRNPA1
ASIC4ENSG00000072182.8455.03870213.037001.094805.684304.85920K562HNRNPC
ASIC4ENSG00000072182.8309.21310190.297600.700202.614401.50660K562HNRNPF
ASIC4ENSG00000072182.8480.17410346.412300.471003.161502.02600K562HNRNPL
ASIC4ENSG00000072182.8824.54750460.477900.8404012.8218010.94560K562HNRNPU
ASIC4ENSG00000072182.8319.98980198.314200.690104.185202.34610K562ILF3
ASIC4ENSG00000072182.8303.26460191.593500.662403.880502.12020K562KHDRBS1
ASIC4ENSG00000072182.8253.12470160.208300.659803.368802.33750K562MATR3
ASIC4ENSG00000072182.81004.47530684.939800.552303.399102.14690K562MSI2
ASIC4ENSG00000072182.8626.00470377.619500.729106.554705.35900K562MTPAP
ASIC4ENSG00000072182.8823.17530419.614800.9720015.1872013.63170K562NSUN2
ASIC4ENSG00000072182.8717.15420267.586001.4222012.7356010.14210K562PABPC1
ASIC4ENSG00000072182.8400.72980178.718101.164805.670104.10460K562PABPN1
ASIC4ENSG00000072182.884.35380156.98710-0.896104.325502.60730K562PCBP1
ASIC4ENSG00000072182.8283.28790142.830600.987904.835903.53360K562PCBP2
ASIC4ENSG00000072182.8440.59130310.841000.503203.135002.25430K562PPIG
ASIC4ENSG00000072182.884.11870155.99240-0.891004.402503.58380K562PTBP1
ASIC4ENSG00000072182.8522.96290701.11870-0.422902.367801.61380K562PUF60
ASIC4ENSG00000072182.81045.46740730.685300.516706.141304.69350K562PUM2
ASIC4ENSG00000072182.846.90330100.35110-1.097302.724301.32210K562RAVER1
ASIC4ENSG00000072182.8333.30450202.509900.718703.471401.30910K562RBFOX2
ASIC4ENSG00000072182.8400.87990288.676900.473603.127202.50260K562RBM15
ASIC4ENSG00000072182.8879.49620583.429400.592004.368702.33930K562RBM17
ASIC4ENSG00000072182.8246.64850149.520400.722004.128103.07920K562RBM22
ASIC4ENSG00000072182.885.33990174.36000-1.030805.069103.72370K562RCC2
ASIC4ENSG00000072182.8492.41270247.461000.992604.709803.64170K562RPS19
ASIC4ENSG00000072182.8508.81740253.736501.003706.334803.93210K562SBDS
ASIC4ENSG00000072182.8879.22360413.984901.0866021.2462019.16360K562SF3A3
ASIC4ENSG00000072182.8471.12160199.260001.241306.423104.09980K562SFPQ
ASIC4ENSG00000072182.8347.20400209.003100.732205.134903.37850K562SLBP
ASIC4ENSG00000072182.871.53090127.55680-0.834503.074901.38290K562SND1
ASIC4ENSG00000072182.8564.87830248.341501.185503.220901.45210K562STIP1
ASIC4ENSG00000072182.8878.78860611.730000.522505.333203.33010K562SUCLG1
ASIC4ENSG00000072182.8380.12120154.756101.2964013.3201011.56290K562TARDBP
ASIC4ENSG00000072182.8209.63620149.286400.489702.029201.33500K562TIA1
ASIC4ENSG00000072182.8486.99510183.725501.4063015.8117013.42770K562TIAL1
ASIC4ENSG00000072182.8283.57430195.267200.538202.437801.55960K562TRIM56
ASIC4ENSG00000072182.8726.25830248.950001.5445022.3443019.60180K562UCHL5
ASIC4ENSG00000072182.8587.07580444.922900.399903.241102.46640K562UPF1
ASIC4ENSG00000072182.8665.52310380.712400.805709.365507.71290K562WDR3
ASIC4ENSG00000072182.8623.04700395.856200.654308.385406.99040K562WDR43
ASIC4ENSG00000072182.81101.59530617.614600.8347012.5675010.07660K562WRN
ASIC4ENSG00000072182.8418.40290253.673800.721802.585901.43280K562XRN2
ASIC4ENSG00000072182.8818.25860587.138600.478804.083503.00180K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ASIC4 is not available on ENCORE database.





4 RBPs can affect the splicing of ASIC4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEASIC4ENSG00000072182.8chr2+220398039220398284220397036220397199220399892220400046-0.433000.007990.06794excludedK562AQR
SEASIC4ENSG00000072182.8chr2+220397984220398130220397036220397199220399892220400046-0.616000.000340.00684excludedK562PUS1
SEASIC4ENSG00000072182.8chr2+220397984220398130220397036220397199220399892220400046-0.594000.000570.01773excludedK562RBM15
SEASIC4ENSG00000072182.8chr2+220398039220398284220397036220397199220399892220400046-0.497000.000650.08522excludedK562ZC3H8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ASIC4 is not avaliable on ENCORE database.