CTD-2583A14.10

General Information

Gene Name : CTD-2583A14.10
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTD-2583A14.10)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTD-2583A14.10 is not avaliable on ENCORE database.

Proteins bound to RNA

CTD-2583A14.10 RNA is bound by 22 proteins.

eCLIP assay for CTD-2583A14.10 is not avaliable on ENCORE database.

22 proteins are bound to CTD-2583A14.10 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	58331123	58331223	+	3'-UTR,5'-UTR	3.64286	3.10693	HepG2	UCHL5
chr19	58331095	58331180	+	3'-UTR,5'-UTR	3.71425	4.84938	K562	DDX3X
chr19	58331123	58331218	+	3'-UTR,5'-UTR	4.10470	4.66021	K562	GEMIN5
chr19	58331807	58331898	+	5'-UTR,intron-Distal,intron-Proximal	3.21311	9.03223	K562	BUD13
chr19	58341671	58341730	+	5'-UTR,intron-Distal	3.90968	3.76710	K562	NONO
chr19	58331278	58331319	+	3'-UTR,5'-UTR,CDS,intron-Proximal	5.24540	4.35676	HepG2	PRPF8
chr19	58331312	58331318	+	5'-UTR,CDS,intron-Proximal	5.81139	22.62597	K562	AQR
chr19	58370305	58370368	+	CDS	3.44192	5.15500	HepG2	BCLAF1
chr19	58331347	58331435	+	intron-Distal,intron-Proximal	3.08712	7.72751	HepG2	BUD13
chr19	58355440	58355491	+	intron-Distal	3.27134	4.07077	HepG2	HNRNPC
chr19	58351637	58351792	+	intron-Distal	3.41875	5.61197	HepG2	HNRNPL
chr19	58331331	58331444	+	intron-Distal,intron-Proximal	4.53440	8.80047	HepG2	EFTUD2
chr19	58357969	58358057	+	intron-Distal	4.69126	6.79309	HepG2	ILF3
chr19	58361240	58361311	+	5'-UTR,intron-Distal	3.01477	4.55320	K562	NONO
chr19	58367362	58367465	+	5'-UTR,intron-Distal,intron-Proximal	4.57971	26.45158	HepG2	PRPF4
chr19	58366754	58366827	+	intron-Distal	3.35319	6.10043	K562	ILF3
chr19	58357612	58357725	+	intron-Distal	3.71249	3.11181	HepG2	CSTF2
chr19	58336184	58336232	+	intron-Distal	4.31413	8.61413	HepG2	QKI
chr19	58336122	58336183	+	intron-Distal	4.21059	8.28561	HepG2	QKI
chr19	58335926	58335982	+	intron-Distal	4.07279	4.60713	HepG2	XPO5
chr19	58335997	58336120	+	intron-Distal	3.23095	6.87129	K562	KHSRP
chr19	58360843	58360921	+	intron-Distal	3.82488	3.41108	HepG2	FUS
chr19	58367402	58367470	+	5'-UTR,intron-Distal,intron-Proximal	3.87098	11.33023	HepG2	SF3B4
chr19	58336178	58336238	+	intron-Distal	7.04161	18.28542	K562	QKI
chr19	58331319	58331414	+	intron-Distal,intron-Proximal	3.78003	6.74268	HepG2	PRPF8
chr19	58367396	58367460	+	5'-UTR,intron-Distal,intron-Proximal	3.28646	3.02835	K562	XRCC6
chr19	58355298	58355342	+	intron-Distal	4.01295	3.03357	HepG2	HNRNPC
chr19	58354169	58354246	+	intron-Distal	4.26171	5.25337	K562	LSM11
chr19	58336118	58336178	+	intron-Distal	5.18010	16.63230	K562	QKI
chr19	58339565	58339629	+	intron-Distal	4.88509	5.20135	HepG2	QKI
chr19	58366113	58366185	+	intron-Distal	3.39602	3.61097	K562	ILF3
chr19	58351668	58351765	+	intron-Distal	3.82183	3.33062	K562	ILF3
chr19	58357600	58357729	+	3'-UTR,intron-Distal,polyA_site	5.66206	13.62873	K562	KHSRP
chr19	58367418	58367469	+	5'-UTR,intron-Distal,intron-Proximal	3.10742	6.49635	K562	SF3B4
chr19	58367379	58367461	+	5'-UTR,intron-Distal,intron-Proximal	3.88395	9.91467	HepG2	GTF2F1
chr19	58367380	58367463	+	5'-UTR,intron-Distal,intron-Proximal	4.20128	14.62182	K562	GTF2F1
chr19	58331318	58331356	+	intron-Proximal	5.57350	28.30163	K562	AQR
chr19	58331356	58331413	+	intron-Proximal	3.71081	7.22920	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTD-2583A14.10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTD-2583A14.10 is not available on ENCORE database.
16 RBPs can affect the levels of CTD-2583A14.10.

The Knockdown/knockout RNA-Seq assay for CTD-2583A14.10 is not available on ENCORE database.

16 RBPs can affect the gene expression of CTD-2583A14.10 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTD-2583A14.10	ENSG00000268750.2	31.31710	12.03180	1.38000	2.09830	1.41770	HepG2	AKAP8L
CTD-2583A14.10	ENSG00000268750.2	35.17700	11.40810	1.62450	2.36350	1.71520	HepG2	HNRNPK
CTD-2583A14.10	ENSG00000268750.2	34.75620	12.13640	1.51780	2.02290	1.45830	HepG2	MAGOH
CTD-2583A14.10	ENSG00000268750.2	42.28520	12.48660	1.75970	3.06410	2.39940	HepG2	NCBP2
CTD-2583A14.10	ENSG00000268750.2	31.69540	8.16830	1.95610	3.21710	2.58840	HepG2	PUM1
CTD-2583A14.10	ENSG00000268750.2	0.00000	8.05140	-99999.99999	1.94200	1.34110	HepG2	RAVER1
CTD-2583A14.10	ENSG00000268750.2	15.51440	3.29750	2.23410	2.07340	1.50270	HepG2	SAFB2
CTD-2583A14.10	ENSG00000268750.2	29.14120	7.37550	1.98210	2.94610	2.22400	HepG2	SLBP
CTD-2583A14.10	ENSG00000268750.2	24.43860	7.59680	1.68560	2.03170	1.48510	HepG2	SRSF5
CTD-2583A14.10	ENSG00000268750.2	15.22670	51.05270	-1.74540	4.10530	2.62990	K562	CCDC124
CTD-2583A14.10	ENSG00000268750.2	44.12090	14.49550	1.60580	3.43360	2.49170	K562	MAGOH
CTD-2583A14.10	ENSG00000268750.2	38.79230	14.46380	1.42320	2.74840	1.82810	K562	MATR3
CTD-2583A14.10	ENSG00000268750.2	22.70060	52.84840	-1.21910	2.11770	1.33870	K562	MBNL1
CTD-2583A14.10	ENSG00000268750.2	43.87620	14.08450	1.63920	3.70240	2.94560	K562	PTBP1
CTD-2583A14.10	ENSG00000268750.2	33.86650	72.52090	-1.09850	2.51810	1.50250	K562	PUM1
CTD-2583A14.10	ENSG00000268750.2	17.73440	44.08170	-1.31360	2.46750	1.94810	K562	PUS1
CTD-2583A14.10	ENSG00000268750.2	13.71210	42.95540	-1.64740	3.05080	2.43350	K562	RBM15
CTD-2583A14.10	ENSG00000268750.2	36.38170	13.97210	1.38060	2.34780	1.69350	K562	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTD-2583A14.10 is not available on ENCORE database.

3 RBPs can affect the splicing of CTD-2583A14.10 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTD-2583A14.10	ENSG00000268750.2	chr19	+	58367474	58367601	58331098	58331313	58369943	58370181	-0.68500	0.00059	0.01105	excluded	K562	PUS1
SE	CTD-2583A14.10	ENSG00000268750.2	chr19	+	58331861	58331917	58331086	58331313	58350390	58350517	0.49400	0.00123	0.04404	included	K562	TARDBP
SE	CTD-2583A14.10	ENSG00000268750.2	chr19	+	58331861	58331917	58331086	58331313	58350390	58350517	0.49900	0.00317	0.09452	included	K562	PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTD-2583A14.10

General Information

Functions

Localization

Domains (AlphaFold: CTD-2583A14.10)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTD-2583A14.10 is not avaliable on ENCORE database.

22 proteins are bound to CTD-2583A14.10 RNA:

eCLIP assay for CTD-2583A14.10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTD-2583A14.10 is not available on ENCORE database.

16 RBPs can affect the gene expression of CTD-2583A14.10 :

The Knockdown/knockout RNA-Seq assay for CTD-2583A14.10 is not available on ENCORE database.

3 RBPs can affect the splicing of CTD-2583A14.10 :

The Knockdown/knockout RNA-Seq assay for CTD-2583A14.10 is not avaliable on ENCORE database.