MDC1

General Information

Gene Name       : MDC1
Gene ID             : ENSG00000137337.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: MDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MDC1ENSG00000137337.1433.8135.8734.84ENCSR000AEF
HepG2MDC1ENSG00000137337.1425.4130.2527.83ENCSR985KAT
K562MDC1ENSG00000137337.1452.6564.1858.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MDC1 RNA is bound by 36 proteins.  







eCLIP assay for MDC1 is not avaliable on ENCORE database.





36 proteins are bound to MDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63066819030668269-3'-UTR,CDS,intron-Distal3.129264.28097K562DDX55
chr63066760130667652-3'-UTR,intron-Distal3.070394.59356K562PUM2
chr63066760530667646-3'-UTR,intron-Distal4.4730811.46741K562PABPC4
chr63068493030685022-5'-UTR,intron-Distal,intron-Proximal3.757375.83621K562AQR
chr63068490830684981-5'-UTR,intron-Distal,intron-Proximal3.175806.30123HepG2RBM22
chr63068479330684860-5'-UTR,intron-Distal3.580594.23459K562PRPF8
chr63068494030685023-5'-UTR,intron-Distal,intron-Proximal4.580594.96013K562PRPF8
chr63067207830672133-CDS,intron-Distal3.870795.34579HepG2HNRNPK
chr63067607430676136-CDS,intron-Distal,intron-Proximal3.686455.86107HepG2PPIG
chr63067226430672315-CDS,intron-Distal5.8455915.79430K562IGF2BP2
chr63067122230671310-CDS,intron-Distal,intron-Proximal4.854867.41350HepG2GRWD1
chr63067280930672863-CDS,intron-Distal4.119176.33671HepG2HNRNPK
chr63067139630671466-CDS,intron-Distal,intron-Proximal3.424745.21025HepG2PPIG
chr63067231830672349-CDS,intron-Distal3.211385.30521K562HNRNPK
chr63067277630672847-CDS,intron-Distal6.3162622.92203K562IGF2BP2
chr63067279030672871-CDS,intron-Distal4.7532320.52378K562HNRNPK
chr63067278230672849-CDS,intron-Distal3.106365.24486K562IGF2BP1
chr63067088530670935-CDS,intron-Distal4.788156.09979K562FXR2
chr63068081830680886-CDS,intron-Distal4.0972712.73791K562DDX24
chr63067291430672937-CDS,intron-Distal4.395245.33511HepG2HNRNPK
chr63067242830672491-CDS,intron-Distal4.022609.60199K562IGF2BP2
chr63067946730679503-CDS,intron-Distal3.667999.45444K562UCHL5
chr63068053730680586-CDS,intron-Distal3.250176.69265K562FMR1
chr63067947130679525-CDS,intron-Distal,intron-Proximal3.627144.58287K562PRPF8
chr63067120330671260-CDS,intron-Distal3.707699.72069K562UCHL5
chr63067515730675238-CDS,intron-Distal,intron-Proximal3.419333.50686HepG2PPIG
chr63068080830680896-CDS,intron-Distal3.187978.40002K562GRWD1
chr63068166430681723-CDS,intron-Distal,intron-Proximal4.491255.40333K562RBM15
chr63067340130673449-CDS,intron-Distal4.231227.88838K562IGF2BP2
chr63068058930680687-CDS,intron-Distal3.478486.06703K562RBM15
chr63067532430675406-CDS,intron-Distal,intron-Proximal3.8294111.20406HepG2EFTUD2
chr63068163030681696-CDS,intron-Distal,intron-Proximal3.488625.50942K562FXR2
chr63067301630673091-CDS,intron-Distal4.6640311.49188K562HNRNPK
chr63067352430673597-CDS,intron-Distal4.287849.64897HepG2HNRNPK
chr63068081230680900-CDS,intron-Distal3.7788314.40255K562FMR1
chr63067918830679211-CDS,intron-Distal,intron-Proximal3.354963.32039HepG2PPIG
chr63067964530679716-CDS,intron-Distal,intron-Proximal3.108409.96629K562UCHL5
chr63068053630680574-CDS,intron-Distal3.106176.50677K562UCHL5
chr63068061230680694-CDS,intron-Distal3.4347513.53377K562UCHL5
chr63067544130675554-CDS,intron-Distal,intron-Proximal5.201904.99229K562DDX52
chr63067352630673571-CDS,intron-Distal3.988568.53153K562HNRNPK
chr63067604330676130-CDS,intron-Distal3.630085.28199HepG2GRWD1
chr63067145430671496-CDS,intron-Distal4.416528.60570K562ZNF622
chr63067530530675361-CDS,intron-Distal,intron-Proximal5.063166.40247K562SF3B4
chr63067122030671286-CDS,intron-Distal4.098433.88780HepG2G3BP1
chr63067293730672981-CDS,intron-Distal4.010557.83211HepG2HNRNPK
chr63067182730671866-CDS,intron-Distal,intron-Proximal3.173085.78778K562IGF2BP1
chr63067545230675514-CDS,intron-Distal,intron-Proximal3.630635.02403K562SF3B4
chr63067032930670387-CDS,intron-Distal,intron-Proximal3.238966.13091K562YBX3
chr63067265430672753-CDS,intron-Distal3.4383010.68056K562HNRNPK
chr63068081030680889-CDS,intron-Distal4.0687222.78389K562UCHL5
chr63067965030679693-CDS,intron-Distal,intron-Proximal3.7891111.87021K562ZNF622
chr63068291730682943-CDS,intron-Distal3.388995.76403K562UCHL5
chr63067126030671314-CDS,intron-Distal,intron-Proximal3.0289210.81124K562UCHL5
chr63067054030670608-CDS,intron-Distal4.148256.28735K562DDX24
chr63068107830681119-CDS,intron-Distal3.700537.36086K562FMR1
chr63068048330680589-CDS,intron-Distal3.2053511.79204K562ZNF622
chr63067287430672939-CDS,intron-Distal6.1227020.31496K562IGF2BP2
chr63068281530682823-CDS,intron-Distal,intron-Proximal3.790953.22721K562YBX3
chr63067179330671868-CDS,intron-Distal,intron-Proximal3.408819.58062K562HNRNPK
chr63067386630673918-CDS,intron-Distal,intron-Proximal4.940518.23487HepG2SF3B4
chr63067944230679502-CDS,intron-Distal,intron-Proximal4.393376.36347HepG2PPIG
chr63067944630679477-CDS,intron-Distal3.076516.46814K562ZNF622
chr63067290030672982-CDS,intron-Distal5.3460220.84382K562HNRNPK
chr63067245430672490-CDS,intron-Distal3.993277.37609K562HNRNPK
chr63067255330672574-CDS,intron-Distal4.416645.27102K562HNRNPK
chr63067339830673447-CDS,intron-Distal4.604403.98311K562IGF2BP1
chr63067944630679467-CDS,intron-Distal3.622736.09767K562UCHL5
chr63067948230679502-CDS,intron-Distal3.588129.12722K562ZNF622
chr63067097930671048-CDS,intron-Distal3.584185.20715K562FXR2
chr63067218430672233-CDS,intron-Distal4.133487.48557K562IGF2BP1
chr63067371030673758-CDS,intron-Distal3.176663.55800HepG2BCLAF1
chr63068056430680627-CDS,intron-Distal3.650975.84565K562ZNF800
chr63067981230679864-CDS,intron-Distal3.259394.26492HepG2BCLAF1
chr63067300330673085-CDS,intron-Distal3.159344.91360K562IGF2BP1
chr63068103830681084-CDS,intron-Distal3.051064.37507K562DDX24
chr63067980930679894-CDS,intron-Distal3.258707.13039K562FMR1
chr63067609130676195-CDS,intron-Distal,intron-Proximal4.204898.55689HepG2U2AF2
chr63067540630675465-CDS,intron-Distal,intron-Proximal3.863884.23256HepG2EFTUD2
chr63067264430672710-CDS,intron-Distal3.144143.85107K562IGF2BP1
chr63068079830680891-CDS,intron-Distal3.348629.23075K562SLTM
chr63068060530680670-CDS,intron-Distal3.491314.25541HepG2GRWD1
chr63067353930673607-CDS,intron-Distal4.055758.71581K562PCBP1
chr63067353830673610-CDS,intron-Distal4.153955.00478HepG2PCBP2
chr63068086830680879-CDS,intron-Distal3.176134.30181K562AGGF1
chr63067218830672247-CDS,intron-Distal3.9411010.33850K562HNRNPK
chr63067176030671832-CDS,intron-Distal3.304804.23869K562GRWD1
chr63067139430671469-CDS,intron-Distal,intron-Proximal3.3893415.08592K562UCHL5
chr63067214730672219-CDS,intron-Distal4.1303213.31312K562IGF2BP2
chr63067231530672364-CDS,intron-Distal5.8685416.75380K562IGF2BP2
chr63067139430671429-CDS,intron-Distal,intron-Proximal3.600824.82719K562TRA2A
chr63067279330672873-CDS,intron-Distal4.570186.20526HepG2DDX59
chr63067052730670608-CDS,intron-Distal,intron-Proximal3.591037.09278HepG2PPIG
chr63067373130673748-CDS,intron-Distal3.033164.56061K562BUD13
chr63067099830671041-CDS,intron-Distal3.287995.62662K562BUD13
chr63068080830680896-CDS,intron-Distal3.4756712.47562K562FXR2
chr63067944330679499-CDS,intron-Distal,intron-Proximal3.094213.01245K562SRSF1
chr63067205230672134-CDS,intron-Distal3.7115312.80388K562IGF2BP2
chr63067191830671967-CDS,intron-Distal,intron-Proximal3.130175.92180K562IGF2BP2
chr63067239730672507-CDS,intron-Distal3.610366.80128K562IGF2BP1
chr63067038730670433-CDS,intron-Distal,intron-Proximal3.818345.73766K562YBX3
chr63067203830672127-CDS,intron-Distal5.0145614.19025K562HNRNPK
chr63067251530672585-CDS,intron-Distal3.8543312.43329K562IGF2BP2
chr63067301530673105-CDS,intron-Distal3.4860512.85263K562IGF2BP2
chr63068287830682946-CDS,intron-Distal3.5661311.60048K562ZNF622
chr63068285030682899-CDS,intron-Distal3.432606.92192K562UCHL5
chr63067176130671780-CDS,intron-Distal3.541144.76162K562IGF2BP2
chr63067995230680079-CDS,intron-Distal4.731056.95882HepG2GRSF1
chr63068107830681129-CDS,intron-Distal3.760926.22645K562FXR2
chr63067129430671315-CDS,intron-Distal,intron-Proximal3.249683.73413HepG2PPIG
chr63067372330673768-CDS,intron-Distal4.374823.91475K562PTBP1
chr63067945030679490-CDS,intron-Distal3.955853.79347HepG2GRWD1
chr63067531630675423-CDS,intron-Distal,intron-Proximal4.0283816.55771K562EFTUD2
chr63067918830679232-CDS,intron-Distal,intron-Proximal3.176663.18789HepG2BCLAF1
chr63068082130680892-CDS,intron-Distal3.4511317.24094K562ZNF622
chr63067385030673917-CDS,intron-Distal,intron-Proximal3.8504610.83729K562SF3B4
chr63067303730673084-CDS,intron-Distal3.023553.52395HepG2HNRNPK
chr63068082130680879-CDS,intron-Distal3.443335.79905HepG2BCLAF1
chr63067289730672983-CDS,intron-Distal3.078764.41910K562IGF2BP1
chr63068286430682949-CDS,intron-Distal3.470994.41784HepG2GRWD1
chr63067353330673600-CDS,intron-Distal4.3736815.80287K562IGF2BP2
chr63067253230672586-CDS,intron-Distal3.927795.48238K562IGF2BP1
chr63067142930671485-CDS,intron-Distal4.168814.38268K562TRA2A
chr63067525930675308-intron-Distal,intron-Proximal4.582316.46853K562EFTUD2
chr63067524330675292-intron-Distal,intron-Proximal4.281984.24670HepG2SF3B4
chr63067524730675291-intron-Distal,intron-Proximal4.184654.05852HepG2EFTUD2
chr63068272130682792-intron-Distal,intron-Proximal3.689603.06150K562KHSRP
chr63067524330675295-intron-Distal,intron-Proximal5.776729.44792K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MDC1 is not available on ENCORE database.

  • 115 RBPs can affect the levels of MDC1.  








The Knockdown/knockout RNA-Seq assay for MDC1 is not available on ENCORE database.





115 RBPs can affect the gene expression of MDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MDC1ENSG00000137337.101157.407802310.71140-0.9974035.9340033.70960HepG2AKAP8L
MDC1ENSG00000137337.10839.767101062.85580-0.339902.078201.39390HepG2ASCC1
MDC1ENSG00000137337.101805.390802930.36720-0.6988020.4716018.91650HepG2AUH
MDC1ENSG00000137337.101536.220201936.84870-0.334302.291001.44190HepG2BCCIP
MDC1ENSG00000137337.10964.263901682.85210-0.8034010.165208.58280HepG2BCLAF1
MDC1ENSG00000137337.103738.258605776.62600-0.6279010.290409.23150HepG2BOP1
MDC1ENSG00000137337.102351.264503301.23310-0.489607.770806.56970HepG2CALR
MDC1ENSG00000137337.101413.767602299.43610-0.7017023.7141022.19760HepG2CKAP4
MDC1ENSG00000137337.10960.888501481.18850-0.624303.853602.94410HepG2CNOT7
MDC1ENSG00000137337.103674.145505303.29890-0.529505.841004.87480HepG2CPSF6
MDC1ENSG00000137337.101997.661902740.16480-0.456006.955006.02410HepG2CELF1
MDC1ENSG00000137337.101417.744701904.38590-0.425703.323902.48640HepG2DDX55
MDC1ENSG00000137337.103837.759206022.27180-0.650004.069302.89540HepG2DDX59
MDC1ENSG00000137337.10767.598001057.14910-0.461802.930602.29660HepG2DDX6
MDC1ENSG00000137337.101528.758501916.57870-0.326202.784301.79730HepG2DHX30
MDC1ENSG00000137337.101811.984202200.29350-0.280103.650002.89140HepG2DKC1
MDC1ENSG00000137337.101235.081001987.06000-0.686009.298708.06850HepG2DNAJC21
MDC1ENSG00000137337.101654.639301969.77350-0.251502.033801.45810HepG2DNAJC2
MDC1ENSG00000137337.101309.426201735.40550-0.406302.939502.01170HepG2EIF3D
MDC1ENSG00000137337.101941.097302595.81560-0.419303.304701.38700HepG2EIF3H
MDC1ENSG00000137337.102150.552201122.854900.9374012.5023011.17090HepG2EIF4A3
MDC1ENSG00000137337.101572.631001093.393500.524303.376402.61920HepG2EIF4B
MDC1ENSG00000137337.102217.503902906.74250-0.390507.005105.78440HepG2EIF4G1
MDC1ENSG00000137337.101770.443602784.45780-0.653306.133004.94260HepG2EIF4G2
MDC1ENSG00000137337.102808.060803364.45880-0.260803.544702.87760HepG2ETF1
MDC1ENSG00000137337.101622.056802247.43270-0.470505.984204.75370HepG2EWSR1
MDC1ENSG00000137337.10707.928301585.04250-1.1628018.8032016.10180HepG2FKBP4
MDC1ENSG00000137337.101976.501001082.268100.8688012.5955010.97820HepG2FUBP3
MDC1ENSG00000137337.101951.200901133.130300.7839010.240908.99270HepG2FXR1
MDC1ENSG00000137337.101653.380401051.030500.653506.602405.59690HepG2G3BP1
MDC1ENSG00000137337.101776.735901115.952500.670907.765806.25570HepG2G3BP2
MDC1ENSG00000137337.103523.605906011.81630-0.7707010.843109.63300HepG2GPKOW
MDC1ENSG00000137337.101973.385602707.73630-0.456408.923107.42820HepG2HNRNPA2B1
MDC1ENSG00000137337.102698.922203086.99470-0.193802.306501.64750HepG2HNRNPF
MDC1ENSG00000137337.101316.365001064.529700.306202.046601.44020HepG2HNRNPK
MDC1ENSG00000137337.102095.210202683.77770-0.357204.841103.96760HepG2HNRNPL
MDC1ENSG00000137337.104257.441805737.17680-0.430404.470303.68810HepG2HNRNPLL
MDC1ENSG00000137337.102688.191502216.741300.278101.935701.41950HepG2HNRNPU
MDC1ENSG00000137337.102490.218203039.80460-0.287703.172002.40110HepG2IGF2BP1
MDC1ENSG00000137337.101818.237801002.725200.858503.849302.68840HepG2IGF2BP3
MDC1ENSG00000137337.102619.334902264.313100.210002.117701.46670HepG2ILF2
MDC1ENSG00000137337.103850.637104891.04920-0.345002.191601.45970HepG2LARP4
MDC1ENSG00000137337.101965.594401133.526800.7940010.100308.87040HepG2MAGOH
MDC1ENSG00000137337.101550.223301139.835800.443603.145602.47570HepG2MATR3
MDC1ENSG00000137337.102801.484403655.51700-0.383903.343302.45740HepG2MSI2
MDC1ENSG00000137337.101576.348101166.656700.434103.228902.54650HepG2NCBP2
MDC1ENSG00000137337.101196.870501608.65240-0.426603.819502.13810HepG2NIP7
MDC1ENSG00000137337.102104.595502921.50060-0.473207.753606.49340HepG2NOL12
MDC1ENSG00000137337.10976.837201354.07950-0.471102.163001.39300HepG2PABPC1
MDC1ENSG00000137337.101434.217201067.463000.426004.089503.37830HepG2PCBP1
MDC1ENSG00000137337.101011.875501468.75220-0.537605.168604.09930HepG2PRPF8
MDC1ENSG00000137337.101632.111501086.209200.5873011.5556010.58880HepG2PTBP1
MDC1ENSG00000137337.101823.875902788.85570-0.612709.507308.49330HepG2PUF60
MDC1ENSG00000137337.102451.379502960.52580-0.272305.097704.34250HepG2PUM1
MDC1ENSG00000137337.102234.490902958.34320-0.404805.526704.59310HepG2PUM2
MDC1ENSG00000137337.101894.607702342.48160-0.306104.983904.20070HepG2PUS1
MDC1ENSG00000137337.101795.555501176.336800.6100010.395609.29420HepG2QKI
MDC1ENSG00000137337.101295.807901922.09500-0.568803.025602.29070HepG2RAVER1
MDC1ENSG00000137337.102978.450804555.10120-0.6129012.7282011.09690HepG2RBM15
MDC1ENSG00000137337.102077.727802812.06390-0.436607.457506.70390HepG2RBM22
MDC1ENSG00000137337.101669.515602145.21820-0.361702.842501.83790HepG2RBM27
MDC1ENSG00000137337.102050.959101208.825200.7626019.8802018.68660HepG2NELFE
MDC1ENSG00000137337.102042.854501125.895000.8594025.6878024.14560HepG2RECQL
MDC1ENSG00000137337.101740.324903325.50780-0.9342020.4973018.98570HepG2RPLP0
MDC1ENSG00000137337.101068.445101888.35050-0.821606.890605.44960HepG2RPS10
MDC1ENSG00000137337.101540.655101978.50540-0.360902.774601.97390HepG2RPS2
MDC1ENSG00000137337.101060.054101488.17480-0.489403.124602.27620HepG2RPS3A
MDC1ENSG00000137337.10558.553101452.86780-1.3791023.6204021.76150HepG2RRP9
MDC1ENSG00000137337.105447.435802781.668100.969502.830401.45860HepG2SF1
MDC1ENSG00000137337.103884.557205678.73730-0.547807.888206.75260HepG2SF3B1
MDC1ENSG00000137337.101816.792401130.838000.6839012.1312011.03080HepG2SF3B4
MDC1ENSG00000137337.102251.618902674.14420-0.248103.847403.04110HepG2SLBP
MDC1ENSG00000137337.101437.736401960.59450-0.447502.788801.82830HepG2SMNDC1
MDC1ENSG00000137337.104412.704902481.491200.830402.740201.43670HepG2SNRNP200
MDC1ENSG00000137337.104682.410606318.56750-0.432302.528701.78270HepG2SNRNP70
MDC1ENSG00000137337.102098.801503176.12080-0.5977018.5264017.53360HepG2SRFBP1
MDC1ENSG00000137337.102213.480801180.368800.9070030.5478029.34990HepG2SRSF1
MDC1ENSG00000137337.104386.564206110.15420-0.478103.948102.73000HepG2SRSF3
MDC1ENSG00000137337.102127.267902753.62750-0.372306.458705.55710HepG2SRSF5
MDC1ENSG00000137337.102331.601403032.88370-0.379407.174506.13600HepG2SRSF7
MDC1ENSG00000137337.101968.579902757.62150-0.4863011.3215010.41990HepG2SSB
MDC1ENSG00000137337.101151.523801796.28370-0.641504.359302.83950HepG2SUB1
MDC1ENSG00000137337.102192.583403049.91480-0.476104.708103.49500HepG2SUPT6H
MDC1ENSG00000137337.101113.375601895.69180-0.767809.414208.29120HepG2SUPV3L1
MDC1ENSG00000137337.102008.549001061.013500.9206024.8752023.42100HepG2TAF15
MDC1ENSG00000137337.103096.865005591.66930-0.8525017.2916015.74330HepG2TARDBP
MDC1ENSG00000137337.10733.829901270.55790-0.791908.991307.40260HepG2TFIP11
MDC1ENSG00000137337.101398.79100974.871700.520805.390704.23630HepG2TIA1
MDC1ENSG00000137337.104604.223103863.186600.253102.239101.66830HepG2U2AF1
MDC1ENSG00000137337.105330.026602892.533600.881702.743801.75840HepG2U2AF2
MDC1ENSG00000137337.102509.336403779.10940-0.5907018.8595017.35320HepG2UPF1
MDC1ENSG00000137337.103005.717203884.42400-0.370006.801405.23450HepG2UTP18
MDC1ENSG00000137337.102629.667603648.58730-0.4725012.0999010.98410HepG2UTP3
MDC1ENSG00000137337.101447.268101866.10360-0.366703.053702.29280HepG2XRN2
MDC1ENSG00000137337.103070.428004156.30220-0.4369014.2096013.21080HepG2ZNF622
MDC1ENSG00000137337.105117.680206418.76280-0.326803.498302.15620K562AARS
MDC1ENSG00000137337.1010005.6777011894.00570-0.249402.072301.50460K562AKAP8L
MDC1ENSG00000137337.1011488.161807456.200600.623508.991508.03170K562AQR
MDC1ENSG00000137337.108932.2814013659.52150-0.6128013.0267010.48580K562CCDC124
MDC1ENSG00000137337.1011778.3814013649.48380-0.212703.352502.12470K562CPEB4
MDC1ENSG00000137337.1011791.0615013895.29490-0.236902.572801.81530K562CPSF6
MDC1ENSG00000137337.1016750.4924013821.462000.277203.348802.27480K562CELF1
MDC1ENSG00000137337.103796.170704536.76920-0.257103.831202.24380K562DDX27
MDC1ENSG00000137337.1011240.9910014123.56030-0.329306.628205.68210K562DDX47
MDC1ENSG00000137337.104347.388505112.34530-0.233802.706301.41880K562DDX6
MDC1ENSG00000137337.1010509.769206358.060000.725004.039902.37990K562DHX30
MDC1ENSG00000137337.1015535.1800012797.927800.279504.706003.51390K562DKC1
MDC1ENSG00000137337.103971.974105515.57890-0.473704.142102.84510K562EIF3D
MDC1ENSG00000137337.104396.566605478.66060-0.317402.324301.76150K562FXR1
MDC1ENSG00000137337.105464.013204467.346700.290402.914301.44280K562G3BP1
MDC1ENSG00000137337.102846.221504304.30400-0.596703.159702.39560K562G3BP2
MDC1ENSG00000137337.1011722.171509752.110800.265403.744802.42740K562GLRX3
MDC1ENSG00000137337.106438.290808798.90270-0.450607.190705.96110K562GRSF1
MDC1ENSG00000137337.107774.141806272.473200.309503.552002.24820K562HNRNPF
MDC1ENSG00000137337.103405.232304666.28850-0.454504.703203.05330K562HNRNPK
MDC1ENSG00000137337.105300.624708531.91880-0.686702.608801.70790K562HNRNPM
MDC1ENSG00000137337.109090.600607185.685700.339105.497804.22460K562HNRNPU
MDC1ENSG00000137337.109174.7621014066.74850-0.616502.505401.74510K562HSPD1
MDC1ENSG00000137337.1013687.098009911.105300.465603.855902.76750K562NAA15
MDC1ENSG00000137337.103607.370905078.03700-0.493305.372903.42170K562NONO
MDC1ENSG00000137337.1014557.9678011392.456100.3536012.4310011.00750K562NSUN2
MDC1ENSG00000137337.105315.700304368.983700.282902.704401.73650K562PCBP2
MDC1ENSG00000137337.107288.3958011775.31160-0.692103.132202.25210K562PPIG
MDC1ENSG00000137337.103997.686905013.51780-0.326703.033102.24690K562PRPF8
MDC1ENSG00000137337.103934.705204771.18590-0.278102.917702.23830K562PTBP1
MDC1ENSG00000137337.109777.8630011794.59390-0.270501.987901.51330K562PUS1
MDC1ENSG00000137337.1014031.3112011492.880400.287802.643302.06240K562RBM15
MDC1ENSG00000137337.1010471.080408345.430500.327303.976702.05000K562RBM17
MDC1ENSG00000137337.103179.994505106.34950-0.683308.704207.24030K562RPS19
MDC1ENSG00000137337.107071.137709820.40370-0.473805.725704.21830K562RPS3
MDC1ENSG00000137337.103204.340905125.58880-0.677706.654904.61300K562RRP9
MDC1ENSG00000137337.106487.462204471.953500.536605.295404.08880K562SF3B4
MDC1ENSG00000137337.1016822.450909180.300600.873702.937101.65870K562SNRNP200
MDC1ENSG00000137337.103474.182204677.55210-0.429106.094405.05240K562SRSF1
MDC1ENSG00000137337.1011938.075209774.276600.288403.835502.44260K562SRSF7
MDC1ENSG00000137337.103531.221904853.30600-0.458804.394003.08600K562SUPV3L1
MDC1ENSG00000137337.106246.672904733.558700.400104.112903.24500K562TARDBP
MDC1ENSG00000137337.107704.998906057.879500.346903.038802.05400K562TIAL1
MDC1ENSG00000137337.108870.353006434.906500.463006.690105.07270K562TRIM56
MDC1ENSG00000137337.106862.018604306.058000.672209.953208.42760K562U2AF2
MDC1ENSG00000137337.1010516.8259012079.62610-0.199903.578002.76920K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MDC1 is not available on ENCORE database.





18 RBPs can affect the splicing of MDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMDC1ENSG00000137337.10chr6-306753423067613430675160306752313067918830679281-0.172000.000170.06370excludedK562IGF2BP2
SEMDC1ENSG00000137337.10chr6-306791883067928130675912306761343067944330679503-0.103000.001130.02318excludedK562SF3B4
SEMDC1ENSG00000137337.10chr6-306791883067928130675912306761343067944330679503-0.068000.001220.04377excludedK562PRPF8
SEMDC1ENSG00000137337.10chr6-3067534230676134306751603067523130679188306792810.279000.000020.00399includedK562XRCC6
SEMDC1ENSG00000137337.10chr6-306708803067106330670528306706543067119430671858-0.073000.000490.04571excludedK562XRCC6
SEMDC1ENSG00000137337.10chr6-306759123067613430675160306752313067918830679281-0.187000.000030.01128excludedK562PCBP1
SEMDC1ENSG00000137337.10chr6-306791883067928130675912306761343067944330679553-0.075000.000010.00018excludedK562AQR
SEMDC1ENSG00000137337.10chr6-3067534230676134306751603067523130679188306792810.264000.000460.02136includedK562FXR1
SEMDC1ENSG00000137337.10chr6-306846583068486030682816306829553068502130685666-0.401000.000650.03101excludedHepG2MATR3
SEMDC1ENSG00000137337.10chr6-3068465830684860306828163068295530685021306854580.090000.000170.00523includedK562U2AF1
SEMDC1ENSG00000137337.10chr6-306828163068295530681756306819603068502130685666-0.061000.001730.03500excludedK562U2AF1
SEMDC1ENSG00000137337.10chr6-3067534230676134306751603067523130679188306792810.162000.000580.04310includedK562HNRNPL
SEMDC1ENSG00000137337.10chr6-306791883067928130675342306761343067944330679503-0.145000.000030.00196excludedHepG2SF3A3
SEMDC1ENSG00000137337.10chr6-3067534230676134306751603067523130679188306792810.259000.002050.03577includedK562U2AF2
SEMDC1ENSG00000137337.10chr6-3068465830684860306828783068295530685021306854580.131000.000010.00062includedK562TARDBP
SEMDC1ENSG00000137337.10chr6-306759123067613430675160306752313067918830679281-0.186000.004780.06715excludedK562HNRNPC
A3SSMDC1ENSG00000137337.10chr6-3067119430671331306711943067131430671397306715980.053000.000540.07986longerK562RBM22
A3SSMDC1ENSG00000137337.10chr6-3067119430671331306711943067131430671397306738750.111000.000020.00301longerHepG2RBM22
A3SSMDC1ENSG00000137337.10chr6-3067088030671079306708803067106330671194306718580.106000.000000.00000longerK562AQR
A3SSMDC1ENSG00000137337.10chr6-3067516030675273306751603067523130679188306792810.065000.005350.03070longerK562AQR
A3SSMDC1ENSG00000137337.10chr6-3067052830670713306705283067065430670880306710500.069000.000000.00002longerK562PUS1
A5SSMDC1ENSG00000137337.10chr6-3067534230676134306759123067613430675160306752310.386000.000460.00971longerK562AQR
MXEMDC1ENSG00000137337.10chr6-3067534230676134306791883067928130675160306752313067944330679503-0.093000.000390.017582includedK562PTBP1
MXEMDC1ENSG00000137337.10chr6-3067534230676134306791883067928130675160306752313067944330679503-0.096000.002090.081022includedK562SF3B1
MXEMDC1ENSG00000137337.10chr6-30670528306706543067088030671079306703293067044030671194306718580.083000.000000.000001includedK562AQR
MXEMDC1ENSG00000137337.10chr6-3067534230676134306791883067932030675160306752313067944330679503-0.167000.001280.011312includedK562AQR
MXEMDC1ENSG00000137337.10chr6-3067534230676134306791883067930030675160306752313067944330679503-0.161000.002100.017332includedK562AQR
MXEMDC1ENSG00000137337.10chr6-3067534230676134306791883067928130675160306752313067944330679503-0.075000.001340.011782includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MDC1 is not avaliable on ENCORE database.