PSMD6

General Information

Gene Name : PSMD6
Gene ID : ENSG00000163636.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PSMD6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PSMD6	ENSG00000163636.10	75.41	71.82	73.61	ENCSR000AEF
HepG2	PSMD6	ENSG00000163636.10	61.16	84.53	72.84	ENCSR985KAT
K562	PSMD6	ENSG00000163636.10	76.35	76.04	76.19	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PSMD6 is not avaliable on ENCORE database.

Proteins bound to RNA

PSMD6 RNA is bound by 20 proteins.

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eCLIP assay for PSMD6 is not avaliable on ENCORE database.

20 proteins are bound to PSMD6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	64008762	64008796	-	intron-Distal	3.70784	25.50404	K562	TIA1
chr3	64008711	64008762	-	intron-Distal	3.37038	18.67319	K562	TIA1
chr3	63999248	63999333	-	CDS,intron-Distal,intron-Proximal	6.40021	15.11298	K562	SF3B4
chr3	64007993	64008112	-	CDS,intron-Distal,intron-Proximal	3.71578	14.31641	K562	UCHL5
chr3	64009040	64009131	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.67628	12.18084	HepG2	GRWD1
chr3	63996238	63996338	-	3'-UTR,intron-Distal,intron-Proximal	4.15351	11.58826	K562	PUM2
chr3	64008440	64008543	-	CDS,intron-Distal,intron-Proximal	4.25499	8.49253	K562	TARDBP
chr3	64008037	64008113	-	CDS,intron-Distal	3.52794	8.31377	HepG2	GRWD1
chr3	64007993	64008043	-	CDS,intron-Distal,intron-Proximal	5.17666	6.58593	HepG2	BCLAF1
chr3	64008211	64008270	-	intron-Distal,intron-Proximal	5.24915	6.40247	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for PSMD6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PSMD6 is not available on ENCORE database.
63 RBPs can affect the levels of PSMD6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PSMD6 is not available on ENCORE database.

63 RBPs can affect the gene expression of PSMD6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PSMD6	ENSG00000163636.6	4011.06280	1857.74780	1.11030	25.66540	24.01550	K562	PUS1
PSMD6	ENSG00000163636.6	2845.78160	1810.09280	0.65270	14.54000	13.16790	K562	RBM15
PSMD6	ENSG00000163636.6	742.71850	1251.21780	-0.75240	10.76610	9.65270	K562	HNRNPC
PSMD6	ENSG00000163636.6	1589.28260	2247.65580	-0.50000	10.88090	9.57320	K562	UPF1
PSMD6	ENSG00000163636.6	1537.85410	2230.69840	-0.53660	10.37750	9.12110	K562	EIF2S2
PSMD6	ENSG00000163636.6	2397.85160	1367.25650	0.81040	9.44100	8.52230	HepG2	AKAP1
PSMD6	ENSG00000163636.6	604.47650	1081.58840	-0.83940	9.40580	8.35140	HepG2	EIF2S1
PSMD6	ENSG00000163636.6	2454.59010	1800.25330	0.44720	8.88730	7.94600	K562	AGGF1
PSMD6	ENSG00000163636.6	2074.43800	1471.02980	0.49580	8.13620	7.35690	HepG2	RBM22
PSMD6	ENSG00000163636.6	1296.44340	795.14240	0.70520	7.96760	6.90360	HepG2	U2AF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 68 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PSMD6 is not available on ENCORE database.

41 RBPs can affect the splicing of PSMD6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	0.09600	0.00113	included	K562	WDR3
SE	PSMD6	ENSG00000163636.6	chr3	-	64004493	64004705	64004338	64004383	64004971	64005117	-0.05100	0.00002	excluded	K562	AQR
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	-0.12600	0.00005	excluded	HepG2	DDX3X
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	0.16000	0.00000	included	K562	PUS1
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	-0.14600	0.00000	excluded	HepG2	NCBP2
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	0.08000	0.00098	included	K562	NSUN2
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	-0.07100	0.00002	excluded	HepG2	LARP4
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	-0.14800	0.00002	excluded	HepG2	SF3B4
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	0.13100	0.00028	included	K562	HNRNPU
SE	PSMD6	ENSG00000163636.6	chr3	-	64008318	64008477	64007993	64008199	64008950	64009148	0.12900	0.00002	included	K562	AGGF1

Showing 1 to 10 of 49 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PSMD6

General Information

Functions

Localization

Domains (AlphaFold: PSMD6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PSMD6 is not avaliable on ENCORE database.

20 proteins are bound to PSMD6 RNA:

eCLIP assay for PSMD6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PSMD6 is not available on ENCORE database.

63 RBPs can affect the gene expression of PSMD6 :

The Knockdown/knockout RNA-Seq assay for PSMD6 is not available on ENCORE database.

41 RBPs can affect the splicing of PSMD6 :

The Knockdown/knockout RNA-Seq assay for PSMD6 is not avaliable on ENCORE database.