MSL1

General Information

Gene Name : MSL1
Gene ID : ENSG00000188895.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MSL1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MSL1	ENSG00000188895.11	69.75	64.80	67.28	ENCSR000AEF
HepG2	MSL1	ENSG00000188895.11	57.00	100.08	78.54	ENCSR985KAT
K562	MSL1	ENSG00000188895.11	71.71	80.57	76.14	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MSL1 is not avaliable on ENCORE database.

Proteins bound to RNA

MSL1 RNA is bound by 36 proteins.

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eCLIP assay for MSL1 is not avaliable on ENCORE database.

36 proteins are bound to MSL1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	38288272	38288340	+	3'-UTR,CDS,intron-Proximal	4.46865	22.65608	HepG2	U2AF2
chr17	38287886	38287947	+	intron-Distal,intron-Proximal	5.16205	20.96684	HepG2	EFTUD2
chr17	38292936	38293019	+	3'-UTR	4.64413	20.88544	K562	PUM2
chr17	38287833	38287943	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.43450	18.80627	HepG2	PRPF8
chr17	38292953	38293010	+	3'-UTR	5.22021	18.24069	HepG2	FUBP3
chr17	38285767	38285870	+	CDS	3.16530	15.85786	HepG2	BCLAF1
chr17	38285798	38285864	+	CDS	4.46280	15.25706	K562	RBM15
chr17	38287621	38287673	+	intron-Distal,intron-Proximal	3.96167	14.57527	HepG2	U2AF2
chr17	38278561	38278641	+	5'-UTR	3.63828	13.99533	HepG2	DDX3X
chr17	38292095	38292191	+	3'-UTR	4.05297	13.08547	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 85 entries

eCLIP assay for MSL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MSL1 is not available on ENCORE database.
106 RBPs can affect the levels of MSL1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MSL1 is not available on ENCORE database.

106 RBPs can affect the gene expression of MSL1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MSL1	ENSG00000188895.7	1711.24940	3132.02590	-0.87200	34.38710	32.46520	HepG2	HNRNPU
MSL1	ENSG00000188895.7	2519.41330	4291.96350	-0.76850	31.53300	30.31750	HepG2	SRSF1
MSL1	ENSG00000188895.7	1819.19690	3070.54820	-0.75520	25.84650	24.34210	HepG2	TRIM56
MSL1	ENSG00000188895.7	2127.52930	3252.72590	-0.61250	24.30320	22.70100	HepG2	SMN1
MSL1	ENSG00000188895.7	1897.15650	2782.77280	-0.55270	17.18550	15.69210	HepG2	DNAJC2
MSL1	ENSG00000188895.7	2046.67450	3389.12150	-0.72760	16.84720	15.55530	HepG2	PUS1
MSL1	ENSG00000188895.7	2549.99580	3581.09470	-0.48990	16.38000	15.32730	HepG2	ZNF622
MSL1	ENSG00000188895.7	2208.62700	3199.26470	-0.53460	15.55550	13.97660	HepG2	ILF2
MSL1	ENSG00000188895.7	3749.01320	2302.49970	0.70320	15.77180	13.82450	K562	U2AF2
MSL1	ENSG00000188895.7	2546.45220	4999.75540	-0.97340	14.75960	13.62970	HepG2	AKAP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 117 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MSL1 is not available on ENCORE database.

12 RBPs can affect the splicing of MSL1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	MSL1	ENSG00000188895.7	chr17	+	38290496	38290703			38290531	38290703	38290086	38290152	0.15800	0.00000	0.00000	longer	K562	AQR
RI	MSL1	ENSG00000188895.7	chr17	+	38289294	38289911			38289294	38289362	38289786	38289911	0.12500	0.00000	0.00000	included	HepG2	IGF2BP3
RI	MSL1	ENSG00000188895.7	chr17	+	38289294	38289911			38289294	38289362	38289786	38289911	0.07100	0.00000	0.00001	included	K562	AQR
SE	MSL1	ENSG00000188895.7	chr17	+	38287472	38287598			38285497	38285880	38287789	38287837	0.11500	0.00005	0.00372	included	K562	PTBP1
RI	MSL1	ENSG00000188895.7	chr17	+	38289294	38289911			38289294	38289362	38289786	38289911	0.05500	0.00006	0.00263	included	HepG2	SRSF1
SE	MSL1	ENSG00000188895.7	chr17	+	38287789	38287837			38285497	38285880	38288286	38288351	-0.20300	0.00009	0.00254	excluded	K562	U2AF2
MXE	MSL1	ENSG00000188895.7	chr17	+	38282435	38282659	38285497	38285880	38278550	38279633	38287789	38287837	-0.13900	0.00010	0.00122	2included	K562	AQR
SE	MSL1	ENSG00000188895.7	chr17	+	38287789	38287837			38285497	38285880	38288286	38288351	-0.20300	0.00017	0.00313	excluded	HepG2	U2AF2
MXE	MSL1	ENSG00000188895.7	chr17	+	38282435	38282659	38287789	38287837	38278550	38279633	38288286	38288351	-0.13700	0.00022	0.00242	2included	K562	AQR
SE	MSL1	ENSG00000188895.7	chr17	+	38287789	38287837			38285497	38285880	38288286	38288351	0.15000	0.00025	0.05773	included	HepG2	ILF3

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MSL1

General Information

Functions

Localization

Domains (AlphaFold: MSL1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MSL1 is not avaliable on ENCORE database.

36 proteins are bound to MSL1 RNA:

eCLIP assay for MSL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MSL1 is not available on ENCORE database.

106 RBPs can affect the gene expression of MSL1 :

The Knockdown/knockout RNA-Seq assay for MSL1 is not available on ENCORE database.

12 RBPs can affect the splicing of MSL1 :

The Knockdown/knockout RNA-Seq assay for MSL1 is not avaliable on ENCORE database.