PTAFR

General Information

Gene Name       : PTAFR
Gene ID             : ENSG00000169403.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PTAFR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PTAFRENSG00000169403.1119.2921.1620.23ENCSR000AEF
HepG2PTAFRENSG00000169403.110.560.250.41ENCSR985KAT
K562PTAFRENSG00000169403.110.190.220.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PTAFR is not avaliable on ENCORE database.



Proteins bound to RNA
  • PTAFR RNA is bound by 1 proteins.  







eCLIP assay for PTAFR is not avaliable on ENCORE database.





1 proteins are bound to PTAFR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12851988128520043-intron-Distal4.325658.36657HepG2HNRNPL
chr12851959228519741-intron-Distal3.105483.65136HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PTAFR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PTAFR is not available on ENCORE database.

  • 118 RBPs can affect the levels of PTAFR.  








The Knockdown/knockout RNA-Seq assay for PTAFR is not available on ENCORE database.





118 RBPs can affect the gene expression of PTAFR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PTAFRENSG00000169403.750.1248099.46880-0.988702.982501.87470HepG2AATF
PTAFRENSG00000169403.726.31220161.82730-2.620704.021002.89840HepG2ABCF1
PTAFRENSG00000169403.750.72680166.59320-1.7155013.0264011.91100HepG2ACO1
PTAFRENSG00000169403.730.51050104.97430-1.782707.873906.29800HepG2ADAR
PTAFRENSG00000169403.736.42340642.23120-4.1402023.3220021.94500HepG2AKAP1
PTAFRENSG00000169403.7321.88230477.54310-0.569102.380001.41070HepG2AKAP8
PTAFRENSG00000169403.7113.63980167.35780-0.558502.333201.62230HepG2AKAP8L
PTAFRENSG00000169403.739.17080531.33670-3.7618020.9748019.07560HepG2ASCC1
PTAFRENSG00000169403.7330.69730122.540601.4322012.8629011.57700HepG2AUH
PTAFRENSG00000169403.7230.9796095.608101.272509.516808.21090HepG2CALR
PTAFRENSG00000169403.791.40830235.58030-1.365806.499103.50770HepG2CDC40
PTAFRENSG00000169403.714.57670504.82440-5.1140028.4404026.33020HepG2CIRBP
PTAFRENSG00000169403.7105.19270166.53520-0.662803.074002.38040HepG2CKAP4
PTAFRENSG00000169403.761.84780107.64640-0.799502.634401.64230HepG2YBX3
PTAFRENSG00000169403.742.57360126.58620-1.572108.417207.41140HepG2CELF1
PTAFRENSG00000169403.7245.06340136.136400.848006.089405.04980HepG2DAZAP1
PTAFRENSG00000169403.754.45110154.06480-1.5005010.948609.50940HepG2DDX19B
PTAFRENSG00000169403.761.42950109.56450-0.834802.589801.93000HepG2DDX21
PTAFRENSG00000169403.745.89170107.36630-1.226204.534803.35380HepG2DDX24
PTAFRENSG00000169403.788.25040615.08920-2.8011015.1214013.77330HepG2DDX3X
PTAFRENSG00000169403.7138.5421063.246701.131203.326102.48810HepG2DDX55
PTAFRENSG00000169403.713.79420159.37890-3.5303027.8326026.24480HepG2DKC1
PTAFRENSG00000169403.7210.47310105.709800.993406.516705.47220HepG2DNAJC21
PTAFRENSG00000169403.7183.29570104.763200.806904.077203.31660HepG2DNAJC2
PTAFRENSG00000169403.739.16030120.94160-1.626806.789005.40980HepG2EEF2
PTAFRENSG00000169403.71409.85680507.930301.4727027.5858025.84540HepG2EIF2S1
PTAFRENSG00000169403.750.92830122.63350-1.267802.486401.38050HepG2EIF2S2
PTAFRENSG00000169403.727.79930103.56540-1.897408.736707.03270HepG2EIF3G
PTAFRENSG00000169403.718.25680561.18740-4.9420029.2027027.16050HepG2EIF4A3
PTAFRENSG00000169403.745.89700546.65300-3.5742019.7198017.99880HepG2EIF4B
PTAFRENSG00000169403.7310.63860128.640601.2718010.642109.10250HepG2EIF4G2
PTAFRENSG00000169403.742.03820140.07540-1.736403.570102.33630HepG2ESF1
PTAFRENSG00000169403.713.86260140.66190-3.343009.134108.14630HepG2ETF1
PTAFRENSG00000169403.751.50730162.77200-1.6600010.846709.22490HepG2EWSR1
PTAFRENSG00000169403.7141.9879087.740100.694402.697301.54670HepG2FAM120A
PTAFRENSG00000169403.7282.00420104.489301.4323012.8751010.72210HepG2FASTKD2
PTAFRENSG00000169403.766.81820566.62400-3.0841016.2982014.76710HepG2FXR1
PTAFRENSG00000169403.794.09840525.41150-2.4812012.0230010.68450HepG2G3BP1
PTAFRENSG00000169403.7102.16430558.07310-2.4496012.2925010.42550HepG2G3BP2
PTAFRENSG00000169403.736.6584087.42140-1.253803.920002.83990HepG2GEMIN5
PTAFRENSG00000169403.734.7102069.11270-0.993602.091101.53050HepG2GPKOW
PTAFRENSG00000169403.782.52840457.04480-2.469405.005603.50790HepG2GRSF1
PTAFRENSG00000169403.729.88720106.72240-1.836307.406906.42640HepG2HNRNPA1
PTAFRENSG00000169403.7287.14420125.101101.198607.878206.44680HepG2HNRNPA2B1
PTAFRENSG00000169403.737.94880118.70450-1.645206.863305.80980HepG2HNRNPC
PTAFRENSG00000169403.7104.04530532.52960-2.3556011.036709.72430HepG2HNRNPK
PTAFRENSG00000169403.728.6024065.95510-1.205302.650302.03220HepG2HNRNPLL
PTAFRENSG00000169403.7196.14110117.920100.734004.087903.36200HepG2HNRNPU
PTAFRENSG00000169403.7177.70320519.87850-1.5487017.4927014.65360HepG2HSPD1
PTAFRENSG00000169403.730.30810533.99270-4.1390023.7225021.98780HepG2IGF2BP2
PTAFRENSG00000169403.792.46780501.43770-2.4390010.436308.62730HepG2IGF2BP3
PTAFRENSG00000169403.781.79730537.24870-2.7155014.3512011.97810HepG2KHSRP
PTAFRENSG00000169403.7248.29620152.273500.705304.796603.46130HepG2KIF1C
PTAFRENSG00000169403.7288.00330519.51200-0.851105.668203.86570HepG2KRR1
PTAFRENSG00000169403.7101.53370167.30290-0.720502.509701.72050HepG2LARP4
PTAFRENSG00000169403.720.51900566.82370-4.7879026.5450024.66620HepG2MAGOH
PTAFRENSG00000169403.773.93180569.92950-2.9465015.6220014.21460HepG2MATR3
PTAFRENSG00000169403.753.14040132.06840-1.313402.397001.64070HepG2MSI2
PTAFRENSG00000169403.7190.34560110.935200.778802.583901.41090HepG2NAA15
PTAFRENSG00000169403.7127.60690583.30040-2.1925011.169009.94140HepG2NCBP2
PTAFRENSG00000169403.742.6869083.68840-0.971202.795601.36990HepG2NIP7
PTAFRENSG00000169403.7220.80380492.67650-1.157904.288702.50970HepG2NKRF
PTAFRENSG00000169403.7123.9204057.986901.095503.556402.30750HepG2NONO
PTAFRENSG00000169403.713.7383058.47910-2.089704.666703.70380HepG2NSUN2
PTAFRENSG00000169403.71370.99210451.366801.602703.258002.29080HepG2PABPC1
PTAFRENSG00000169403.7768.97020519.218300.566503.461102.65910HepG2PABPC4
PTAFRENSG00000169403.738.04690116.72610-1.617308.219906.88340HepG2PARN
PTAFRENSG00000169403.745.37370517.88980-3.5127028.0481026.45820HepG2PCBP1
PTAFRENSG00000169403.758.90770116.05880-0.978303.141802.03670HepG2PCBP2
PTAFRENSG00000169403.7316.59390158.416400.998807.922805.12440HepG2PES1
PTAFRENSG00000169403.7243.0197088.806201.452209.994707.09240HepG2PHF6
PTAFRENSG00000169403.765.04320105.17600-0.693302.206501.54070HepG2PPIL4
PTAFRENSG00000169403.747.65410122.01750-1.356405.176403.55050HepG2PRPF6
PTAFRENSG00000169403.771.85990527.03780-2.8746020.5064019.28110HepG2PTBP1
PTAFRENSG00000169403.724.12560136.77600-2.5032017.5477016.32170HepG2PUM1
PTAFRENSG00000169403.719.77010169.68280-3.1014028.8459027.24580HepG2PUS1
PTAFRENSG00000169403.7356.78190570.65530-0.677602.309801.72940HepG2QKI
PTAFRENSG00000169403.724.65540112.03390-2.184007.906606.75120HepG2RAVER1
PTAFRENSG00000169403.7560.50410201.730901.4742023.7099021.63600HepG2RBM15
PTAFRENSG00000169403.7315.32290117.573801.4232014.3236013.33140HepG2RBM22
PTAFRENSG00000169403.7117.00100517.95910-2.1463013.4663012.04530HepG2RBM25
PTAFRENSG00000169403.755.12080111.60630-1.017703.212702.13960HepG2RBM27
PTAFRENSG00000169403.773.51020586.48800-2.9961023.4957022.22710HepG2NELFE
PTAFRENSG00000169403.750.18390546.33260-3.4445026.7290025.16250HepG2RECQL
PTAFRENSG00000169403.763.07620109.98860-0.802202.275001.41720HepG2RPS10
PTAFRENSG00000169403.751.28400102.93060-1.005103.080402.23510HepG2RPS2
PTAFRENSG00000169403.762.27730496.37900-2.994706.015604.84100HepG2RPS3A
PTAFRENSG00000169403.7336.38950105.015601.6794022.9963021.38600HepG2SAFB2
PTAFRENSG00000169403.711.2460073.56470-2.7096010.320908.95330HepG2SF3A3
PTAFRENSG00000169403.77.0209065.28480-3.217009.554908.31990HepG2SF3B1
PTAFRENSG00000169403.7107.12320548.59690-2.3565014.9166013.70770HepG2SF3B4
PTAFRENSG00000169403.7234.91360123.534100.927106.484805.48350HepG2SLBP
PTAFRENSG00000169403.7158.1528060.545601.385103.693702.12870HepG2SNRNP200
PTAFRENSG00000169403.714.0788072.64000-2.367206.472705.26800HepG2SNRNP70
PTAFRENSG00000169403.7194.23450132.806700.548402.232301.76680HepG2SRFBP1
PTAFRENSG00000169403.746.08190572.66430-3.6354029.3221028.14400HepG2SRSF1
PTAFRENSG00000169403.7143.0900070.240301.026503.576602.42510HepG2SRSF3
PTAFRENSG00000169403.7240.89420454.16040-0.914807.652404.06180HepG2SRSF4
PTAFRENSG00000169403.757.10000127.21470-1.155705.386804.55510HepG2SRSF5
PTAFRENSG00000169403.7251.33580465.93420-0.890504.914104.21710HepG2SRSF9
PTAFRENSG00000169403.75.95870115.32770-4.2746011.1599010.26390HepG2SSB
PTAFRENSG00000169403.7175.61260518.07450-1.5608019.4300016.55290HepG2SSRP1
PTAFRENSG00000169403.792.72180144.68660-0.642002.179201.61500HepG2SUCLG1
PTAFRENSG00000169403.7294.35720524.42380-0.833204.089202.46940HepG2SUGP2
PTAFRENSG00000169403.7157.36250514.86610-1.7101011.5349010.51360HepG2TAF15
PTAFRENSG00000169403.735.32650508.86320-3.8485041.4763038.30210HepG2TBRG4
PTAFRENSG00000169403.722.09320114.59770-2.3749013.2259012.27100HepG2TIAL1
PTAFRENSG00000169403.743.45170112.43810-1.371604.681002.79980HepG2TRA2A
PTAFRENSG00000169403.760.21310125.87150-1.063804.251603.14130HepG2TUFM
PTAFRENSG00000169403.756.36250139.66620-1.309202.345701.76280HepG2U2AF1
PTAFRENSG00000169403.74.5304037.22880-3.038702.125201.46050HepG2UCHL5
PTAFRENSG00000169403.727.3324067.05470-1.294703.652202.46640HepG2UTP18
PTAFRENSG00000169403.73.9845062.98690-3.9826011.7945010.69320HepG2UTP3
PTAFRENSG00000169403.728.9461091.76730-1.664602.057601.46520HepG2ZC3H8
PTAFRENSG00000169403.7252.0818071.752001.8127020.5671019.41700HepG2ZNF622
PTAFRENSG00000169403.794.8237017.746902.417609.015908.05460K562AQR
PTAFRENSG00000169403.752.2442024.724801.079202.190201.59970K562DDX47
PTAFRENSG00000169403.743.373303.968903.449908.080407.11440K562FXR1
PTAFRENSG00000169403.751.7296011.058902.225705.052204.26830K562HNRNPC
PTAFRENSG00000169403.7305.7890040.234802.9259034.5915031.70670K562PUF60
PTAFRENSG00000169403.783.7774042.781000.969502.888901.79820K562PUM1
PTAFRENSG00000169403.748.801609.578902.348903.148502.57600K562PUS1
PTAFRENSG00000169403.720.050703.851602.380002.878502.01770K562RBM22
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PTAFR is not available on ENCORE database.






No RBPs affect the alternative splcing events of PTAFR on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PTAFR is not avaliable on ENCORE database.