PRICKLE3

General Information

Gene Name       : PRICKLE3
Gene ID             : ENSG00000012211.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRICKLE3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRICKLE3ENSG00000012211.121.484.112.79ENCSR000AEF
HepG2PRICKLE3ENSG00000012211.125.082.934.00ENCSR985KAT
K562PRICKLE3ENSG00000012211.1214.0312.8413.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRICKLE3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRICKLE3 RNA is bound by 4 proteins.  







eCLIP assay for PRICKLE3 is not avaliable on ENCORE database.





4 proteins are bound to PRICKLE3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4904103249041079-5'-UTR,CDS,intron-Distal,intron-Proximal5.374888.34710K562AQR
chrX4903209649032177-CDS,intron-Distal4.797086.19943K562RBM15
chrX4903480749034879-CDS,intron-Distal,intron-Proximal5.541636.40247K562SF3B4
chrX4903254549032587-CDS,intron-Distal4.747314.48994K562RBM15
chrX4903766849037720-intron-Distal5.5515411.83641K562ILF3
chrX4903804349038096-intron-Distal3.249163.61097K562ILF3
chrX4904263949042707-intron-Distal3.757374.88100K562AQR
chrX4903555049035598-intron-Distal,intron-Proximal4.623634.09264K562AQR
chrX4903767049037719-intron-Distal5.241759.23558HepG2ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRICKLE3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRICKLE3 is not available on ENCORE database.

  • 42 RBPs can affect the levels of PRICKLE3.  








The Knockdown/knockout RNA-Seq assay for PRICKLE3 is not available on ENCORE database.





42 RBPs can affect the gene expression of PRICKLE3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRICKLE3ENSG00000012211.8138.3044093.096600.570902.074401.53320HepG2ACO1
PRICKLE3ENSG00000012211.8134.6860083.993700.681101.789901.35220HepG2AKAP1
PRICKLE3ENSG00000012211.8165.5896098.468700.749802.829701.78120HepG2AKAP8
PRICKLE3ENSG00000012211.8264.89190177.789900.575102.730902.13610HepG2BOP1
PRICKLE3ENSG00000012211.8165.8444069.146101.262005.286704.45860HepG2DDX6
PRICKLE3ENSG00000012211.8114.4360067.403500.763502.759602.15280HepG2HNRNPU
PRICKLE3ENSG00000012211.8131.6170076.287800.786702.450201.85260HepG2NCBP2
PRICKLE3ENSG00000012211.8147.8686096.253300.619302.608802.02910HepG2PUM1
PRICKLE3ENSG00000012211.8142.6236096.180500.568301.938301.37080HepG2PUM2
PRICKLE3ENSG00000012211.8197.48450111.633100.822904.342003.73120HepG2RBM22
PRICKLE3ENSG00000012211.8118.61250174.76540-0.559201.945401.34690HepG2SF3B1
PRICKLE3ENSG00000012211.8119.5442075.730200.658501.967801.45520HepG2SF3B4
PRICKLE3ENSG00000012211.8109.6565069.998400.647502.021601.45840HepG2SMN1
PRICKLE3ENSG00000012211.8115.80940188.05300-0.699402.387501.46580HepG2SRSF3
PRICKLE3ENSG00000012211.8145.73340101.813200.517301.892101.36010HepG2SUCLG1
PRICKLE3ENSG00000012211.8239.43760116.153601.043502.385501.47830HepG2U2AF2
PRICKLE3ENSG00000012211.8170.07210118.152400.525402.133401.50690HepG2UPF1
PRICKLE3ENSG00000012211.847.4277092.02250-0.956303.157302.44790HepG2ZC3H8
PRICKLE3ENSG00000012211.8720.33330586.642800.296101.858201.31830K562AKAP8L
PRICKLE3ENSG00000012211.8602.52000901.28210-0.581004.906304.16460K562AQR
PRICKLE3ENSG00000012211.8761.82690477.982200.672406.109904.37640K562CCAR1
PRICKLE3ENSG00000012211.8860.60920535.158100.685304.629402.83730K562DHX30
PRICKLE3ENSG00000012211.8586.10930429.254300.449203.863302.46070K562EIF4B
PRICKLE3ENSG00000012211.8837.377201156.73200-0.466106.140404.75510K562EIF4G2
PRICKLE3ENSG00000012211.8916.90000726.605500.335502.580201.36030K562EXOSC5
PRICKLE3ENSG00000012211.867.13020188.59410-1.490308.699007.30110K562G3BP2
PRICKLE3ENSG00000012211.81155.59820811.678600.509605.013803.94880K562GPKOW
PRICKLE3ENSG00000012211.8464.10750324.692800.515303.678202.70080K562MAGOH
PRICKLE3ENSG00000012211.81393.549501181.137800.238502.649201.91600K562NSUN2
PRICKLE3ENSG00000012211.8638.57400924.23480-0.533402.595401.79210K562PCBP3
PRICKLE3ENSG00000012211.8285.71450414.11370-0.535501.968901.32960K562PRPF8
PRICKLE3ENSG00000012211.8513.30660315.477700.702206.792405.78740K562PTBP1
PRICKLE3ENSG00000012211.8549.92020302.371300.862808.972207.32240K562RBM22
PRICKLE3ENSG00000012211.8474.93150318.228800.577602.305501.32800K562NELFE
PRICKLE3ENSG00000012211.8363.72010196.082400.891308.260006.74370K562SF3B4
PRICKLE3ENSG00000012211.8911.174301194.06640-0.390105.425004.16830K562SRPK2
PRICKLE3ENSG00000012211.8469.66010309.300900.602504.527203.62610K562SRSF1
PRICKLE3ENSG00000012211.8445.57180254.122300.810006.457604.73020K562SRSF4
PRICKLE3ENSG00000012211.8370.13130610.46110-0.721902.908001.43520K562SUPT6H
PRICKLE3ENSG00000012211.898.12100185.12550-0.915903.322001.66610K562TAF15
PRICKLE3ENSG00000012211.8708.63650312.973301.1789016.1745014.18390K562TARDBP
PRICKLE3ENSG00000012211.8424.43490301.913700.491302.493301.72220K562TIA1
PRICKLE3ENSG00000012211.8416.78780296.407800.491602.813501.70820K562TRA2A
PRICKLE3ENSG00000012211.8926.241201252.38580-0.435206.544805.49370K562UPF1
PRICKLE3ENSG00000012211.8784.203601114.37010-0.506908.306706.91610K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRICKLE3 is not available on ENCORE database.





3 RBPs can affect the splicing of PRICKLE3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRICKLE3ENSG00000012211.8chrX-490360414903615549035599490357374904018649040370-0.253000.000000.00000excludedK562SUPV3L1
A3SSPRICKLE3ENSG00000012211.8chrX-4903559949035799490355994903573749036041490361550.203000.000000.00000longerK562AQR
A3SSPRICKLE3ENSG00000012211.8chrX-4903604149036185490360414903615549040186490403700.089000.000000.00005longerK562AQR
MXEPRICKLE3ENSG00000012211.8chrX-4903559949035737490360414903615549034620490348244904018649040370-0.183000.000280.031242includedK562NONO

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRICKLE3 is not avaliable on ENCORE database.