PDGFB

General Information

Gene Name       : PDGFB
Gene ID             : ENSG00000100311.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDGFB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDGFBENSG00000100311.160.180.390.29ENCSR000AEF
HepG2PDGFBENSG00000100311.162.691.061.88ENCSR985KAT
K562PDGFBENSG00000100311.160.640.270.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDGFB is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDGFB RNA is bound by 1 proteins.  







eCLIP assay for PDGFB is not avaliable on ENCORE database.





1 proteins are bound to PDGFB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223963909739639216-intron-Distal,intron-Proximal4.047366.23207HepG2NKRF
chr223963731339637381-intron-Distal3.921703.42782HepG2NKRF
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDGFB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDGFB is not available on ENCORE database.

  • 126 RBPs can affect the levels of PDGFB.  








The Knockdown/knockout RNA-Seq assay for PDGFB is not available on ENCORE database.





126 RBPs can affect the gene expression of PDGFB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDGFBENSG00000100311.1294.64050179.96490-0.927204.528503.29140HepG2ADAR
PDGFBENSG00000100311.12322.43950617.55170-0.937502.077101.39310HepG2ASCC1
PDGFBENSG00000100311.12905.03220181.889802.3148047.2779045.05980HepG2AUH
PDGFBENSG00000100311.12291.7118093.493001.641507.354505.97030HepG2BCLAF1
PDGFBENSG00000100311.12341.41350168.159601.021608.996407.72130HepG2CALR
PDGFBENSG00000100311.12202.41380586.74570-1.535403.816002.91620HepG2CIRBP
PDGFBENSG00000100311.12187.03680338.50720-0.855906.330205.39860HepG2CKAP4
PDGFBENSG00000100311.12239.7010074.062501.6943013.1799011.80500HepG2CPSF6
PDGFBENSG00000100311.12450.41050246.567200.869204.640903.23710HepG2CPSF7
PDGFBENSG00000100311.12309.11920184.552600.744005.402903.97850HepG2YBX3
PDGFBENSG00000100311.12839.13480240.364301.803605.506804.65780HepG2CELF1
PDGFBENSG00000100311.12661.66940258.501101.3558029.8604027.91740HepG2DAZAP1
PDGFBENSG00000100311.1294.41210313.18280-1.7300014.7996013.20960HepG2DDX19B
PDGFBENSG00000100311.1294.61870206.28480-1.124406.755305.74350HepG2DDX21
PDGFBENSG00000100311.12624.74860105.833302.5614024.2935022.36060HepG2DDX55
PDGFBENSG00000100311.126149.62660614.541203.3228011.8658010.69420HepG2DDX6
PDGFBENSG00000100311.1299.74720323.99620-1.6996014.7674013.46270HepG2DKC1
PDGFBENSG00000100311.12655.43040181.214301.8546042.5911040.26980HepG2DNAJC21
PDGFBENSG00000100311.12100.99280228.46820-1.177706.917805.52920HepG2EEF2
PDGFBENSG00000100311.12107.44770190.45390-0.825803.850502.53590HepG2EFTUD2
PDGFBENSG00000100311.122843.63260590.323202.2681071.8327069.27730HepG2EIF2S1
PDGFBENSG00000100311.1291.01290227.17110-1.319603.319202.03040HepG2EIF2S2
PDGFBENSG00000100311.12188.81480652.15870-1.788304.703503.87270HepG2EIF4A3
PDGFBENSG00000100311.12314.99210635.38370-1.012302.321401.68870HepG2EIF4B
PDGFBENSG00000100311.12612.47920244.265901.3261017.5780015.66860HepG2EIF4G2
PDGFBENSG00000100311.1289.40300259.47140-1.537203.997202.70320HepG2ESF1
PDGFBENSG00000100311.12314.67430208.806200.591603.905303.21170HepG2ETF1
PDGFBENSG00000100311.12571.49190302.600100.917203.183802.36480HepG2FIP1L1
PDGFBENSG00000100311.1279.50270202.48720-1.348807.576405.80480HepG2FUS
PDGFBENSG00000100311.12199.10530658.65980-1.726003.932403.11720HepG2FXR1
PDGFBENSG00000100311.12221.74350648.74350-1.548803.788502.73660HepG2G3BP2
PDGFBENSG00000100311.1278.65110165.12670-1.070005.107903.88630HepG2GEMIN5
PDGFBENSG00000100311.12415.35130177.444901.2269010.866108.81510HepG2GNB2L1
PDGFBENSG00000100311.12179.4468083.941801.096004.952004.11090HepG2GPKOW
PDGFBENSG00000100311.12529.11850323.280700.710708.546706.94360HepG2HDGF
PDGFBENSG00000100311.1284.42680182.95040-1.115705.469004.60400HepG2HNRNPA1
PDGFBENSG00000100311.12339.27220235.490000.526703.420002.67860HepG2HNRNPL
PDGFBENSG00000100311.12183.4458080.108401.195206.011805.12080HepG2HNRNPLL
PDGFBENSG00000100311.12129.34370202.15430-0.644203.303302.64540HepG2HNRNPU
PDGFBENSG00000100311.12361.47050755.38140-1.0633010.759308.42140HepG2HSPD1
PDGFBENSG00000100311.12192.30260117.325200.712803.066502.30620HepG2IGF2BP1
PDGFBENSG00000100311.12283.83890206.493700.458902.911502.16170HepG2ILF2
PDGFBENSG00000100311.12425.09970309.533000.457603.672202.49870HepG2KIF1C
PDGFBENSG00000100311.12243.16850754.83830-1.6342011.810809.34760HepG2KRR1
PDGFBENSG00000100311.12201.71340658.89270-1.707704.242803.43350HepG2MAGOH
PDGFBENSG00000100311.12138.16050662.47330-2.261505.909005.01300HepG2MATR3
PDGFBENSG00000100311.12672.06470244.661301.4577020.7119018.77770HepG2MSI2
PDGFBENSG00000100311.12140.5983081.730400.782502.185501.33150HepG2MTPAP
PDGFBENSG00000100311.12465.10970205.501201.178304.159102.67090HepG2NAA15
PDGFBENSG00000100311.12417.01970256.326500.702005.745004.65250HepG2NOL12
PDGFBENSG00000100311.1253.11250138.63790-1.384205.954703.69070HepG2PA2G4
PDGFBENSG00000100311.123521.64500768.814402.195402.820301.92200HepG2PABPC1
PDGFBENSG00000100311.121358.90060603.394901.171209.696208.36460HepG2PABPC4
PDGFBENSG00000100311.12300.23320580.52610-0.951303.574802.90330HepG2PCBP1
PDGFBENSG00000100311.1286.30480153.37180-0.829503.611702.20310HepG2PKM
PDGFBENSG00000100311.12245.79690180.305200.446902.151001.49330HepG2PPIL4
PDGFBENSG00000100311.1291.38110201.48470-1.140705.567703.88270HepG2PRPF6
PDGFBENSG00000100311.12631.47320259.534301.2827019.6401017.94570HepG2PUM2
PDGFBENSG00000100311.12216.80380344.94920-0.670004.265703.53050HepG2PUS1
PDGFBENSG00000100311.12356.14250102.561901.795905.127901.95590HepG2RBFOX2
PDGFBENSG00000100311.12959.62220379.661101.3377028.9110026.65690HepG2RBM15
PDGFBENSG00000100311.12496.94150174.529101.5095016.7442015.68850HepG2RBM22
PDGFBENSG00000100311.12870.14280580.600900.583602.275501.65880HepG2RBM25
PDGFBENSG00000100311.1298.80120209.50620-1.084402.678701.70120HepG2RBM27
PDGFBENSG00000100311.12232.23200657.42640-1.501306.048505.30010HepG2NELFE
PDGFBENSG00000100311.12173.57480612.44350-1.819007.781306.82570HepG2RECQL
PDGFBENSG00000100311.12112.63340180.46660-0.680102.933202.30360HepG2RPS19
PDGFBENSG00000100311.12266.93450845.66840-1.663602.224301.50690HepG2RPS3A
PDGFBENSG00000100311.12122.45560210.96370-0.784703.529702.76450HepG2SF3A3
PDGFBENSG00000100311.12411.00360234.568700.809006.165905.18500HepG2SLBP
PDGFBENSG00000100311.12381.6294093.954702.022009.119406.50500HepG2SNRNP200
PDGFBENSG00000100311.12189.6433088.219701.104004.397403.40220HepG2SNRNP70
PDGFBENSG00000100311.12528.66350197.134401.4231011.4315010.60130HepG2SRFBP1
PDGFBENSG00000100311.1280.42500641.92430-2.9967013.2508012.38190HepG2SRSF1
PDGFBENSG00000100311.12395.04660788.57610-0.9972012.031107.96330HepG2SRSF4
PDGFBENSG00000100311.12318.36600241.558400.398201.916201.38240HepG2SRSF5
PDGFBENSG00000100311.12218.41390117.069000.899605.565004.63480HepG2SRSF7
PDGFBENSG00000100311.12432.98170752.73510-0.797807.497205.53160HepG2SSRP1
PDGFBENSG00000100311.12701.34430172.835102.0206019.5495016.79110HepG2SUB1
PDGFBENSG00000100311.12444.01570204.121301.121104.322303.16050HepG2SUPT6H
PDGFBENSG00000100311.12176.32470577.17540-1.710806.485905.69010HepG2TAF15
PDGFBENSG00000100311.12110.35870739.35240-2.7441029.1740026.28700HepG2TBRG4
PDGFBENSG00000100311.12149.4647070.588701.082203.541102.43030HepG2TFIP11
PDGFBENSG00000100311.12417.55830198.186901.075002.219001.70300HepG2TRIM56
PDGFBENSG00000100311.12359.61800239.007400.589303.425502.44080HepG2TUFM
PDGFBENSG00000100311.12503.72090252.968000.993607.199205.82370HepG2UBE2L3
PDGFBENSG00000100311.12446.50700187.092601.254804.785103.90850HepG2UPF1
PDGFBENSG00000100311.12175.5853096.397300.865002.421701.48750HepG2UPF2
PDGFBENSG00000100311.1257.07860180.63040-1.6620011.4532010.36680HepG2UTP3
PDGFBENSG00000100311.12637.36500205.765901.6310015.9960014.95270HepG2ZNF622
PDGFBENSG00000100311.12122.0441038.947801.647706.111004.29190K562AARS
PDGFBENSG00000100311.1241.8776018.635601.168001.979001.48360K562AGGF1
PDGFBENSG00000100311.1291.9915019.390902.246005.998105.01200K562AKAP8L
PDGFBENSG00000100311.1234.2410094.90700-1.470804.302202.69810K562APOBEC3C
PDGFBENSG00000100311.12137.5339052.093101.400507.215605.64100K562BCLAF1
PDGFBENSG00000100311.1225.9515060.35270-1.217602.696401.83470K562BOP1
PDGFBENSG00000100311.1258.9413022.271601.404003.554302.19370K562CCDC124
PDGFBENSG00000100311.12168.3934068.125101.305507.501205.50230K562CIRBP
PDGFBENSG00000100311.12172.5109099.008300.801003.237601.65650K562CKAP4
PDGFBENSG00000100311.12154.2217076.549101.010403.333902.11050K562CPEB4
PDGFBENSG00000100311.1252.8308021.864601.272702.855301.36860K562DDX19B
PDGFBENSG00000100311.1282.0365046.841200.808402.234401.30650K562DDX3X
PDGFBENSG00000100311.1218.0139079.22480-2.136808.444507.38720K562DDX47
PDGFBENSG00000100311.1297.8727044.244401.145303.712601.74190K562DDX51
PDGFBENSG00000100311.128.1266053.83980-2.727906.150804.61070K562EIF3A
PDGFBENSG00000100311.12108.6071043.870801.307702.848301.79860K562EIF3D
PDGFBENSG00000100311.1215.1104048.94090-1.695503.950002.97160K562EIF4A3
PDGFBENSG00000100311.1288.8042044.077101.010503.675902.31210K562EIF4B
PDGFBENSG00000100311.1215.9829050.89700-1.671103.861803.16410K562FXR1
PDGFBENSG00000100311.1231.08210108.12100-1.798502.501901.78050K562GRSF1
PDGFBENSG00000100311.1215.9672075.15620-2.234802.640501.86260K562HSPD1
PDGFBENSG00000100311.12129.6942063.611701.027703.661602.41890K562IGF2BP2
PDGFBENSG00000100311.1244.9997020.579701.128602.222401.49220K562KIF1C
PDGFBENSG00000100311.12123.2412041.269901.578204.879902.95950K562LARP7
PDGFBENSG00000100311.1250.2922023.054301.125202.204001.40840K562MBNL1
PDGFBENSG00000100311.1227.5125059.80870-1.120302.502301.67360K562METAP2
PDGFBENSG00000100311.1220.0230074.32990-1.892306.541005.34690K562MTPAP
PDGFBENSG00000100311.1245.6718016.159301.498802.616201.76240K562NAA15
PDGFBENSG00000100311.12102.1166040.359701.339104.717402.89900K562NONO
PDGFBENSG00000100311.1229.51400119.08040-2.012509.582008.04190K562PCBP3
PDGFBENSG00000100311.1253.02280110.51060-1.059503.697902.04690K562PNPT1
PDGFBENSG00000100311.1217.0493091.34650-2.4216010.469908.95570K562POLR2G
PDGFBENSG00000100311.1212.3880039.86880-1.686302.782802.03100K562PRPF8
PDGFBENSG00000100311.12131.9653064.908201.023604.768703.91870K562PTBP1
PDGFBENSG00000100311.1229.49160117.35170-1.992507.891606.50430K562PUF60
PDGFBENSG00000100311.12174.6654062.212401.489206.762805.38080K562RBM22
PDGFBENSG00000100311.12115.5341034.861601.728508.220306.50840K562RCC2
PDGFBENSG00000100311.1215.7718040.61370-1.364602.065901.36480K562RPS19
PDGFBENSG00000100311.1235.6274081.36750-1.191503.361902.16650K562SAFB
PDGFBENSG00000100311.12125.1736034.118801.875208.863106.33620K562SERBP1
PDGFBENSG00000100311.1245.0171081.49050-0.856202.312601.56130K562SF3A3
PDGFBENSG00000100311.1226.9684058.26540-1.111402.202401.34410K562SF3B1
PDGFBENSG00000100311.12188.4793083.488301.174707.424205.96910K562SRPK2
PDGFBENSG00000100311.125.2793035.58260-2.752805.366603.47790K562SSB
PDGFBENSG00000100311.1217.2932091.61210-2.4053010.817709.19820K562SYNCRIP
PDGFBENSG00000100311.1277.1017035.189401.131503.317901.46420K562TFIP11
PDGFBENSG00000100311.12161.4381096.068100.748803.109001.76040K562TROVE2
PDGFBENSG00000100311.1220.0026087.57270-2.130308.962007.76030K562UPF1
PDGFBENSG00000100311.12217.1980097.925801.149206.320804.53420K562UTP3
PDGFBENSG00000100311.1241.1155077.91900-0.922302.747201.90370K562WDR43
PDGFBENSG00000100311.1299.50020158.99330-0.676202.688801.42090K562WRN
PDGFBENSG00000100311.1217.9116074.77040-2.061603.069001.39160K562XRCC6
PDGFBENSG00000100311.1292.94800151.20410-0.702002.812801.94100K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDGFB is not available on ENCORE database.






No RBPs affect the alternative splcing events of PDGFB on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PDGFB is not avaliable on ENCORE database.