ATP2C1

General Information

Gene Name       : ATP2C1
Gene ID             : ENSG00000017260.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATP2C1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATP2C1ENSG00000017260.1938.9834.3236.65ENCSR000AEF
HepG2ATP2C1ENSG00000017260.1922.0834.9928.54ENCSR985KAT
K562ATP2C1ENSG00000017260.1918.5119.7219.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATP2C1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATP2C1 RNA is bound by 23 proteins.  







eCLIP assay for ATP2C1 is not avaliable on ENCORE database.





23 proteins are bound to ATP2C1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3130712797130712943+3'-UTR,CDS,intron-Proximal4.012266.01926K562LIN28B
chr3130711798130711830+3'-UTR,CDS3.310053.28366HepG2BCLAF1
chr3130711800130711846+3'-UTR,CDS,intron-Proximal3.368444.36355HepG2LIN28B
chr3130712812130712880+3'-UTR,CDS3.815246.15985HepG2LIN28B
chr3130613095130613182+5'-UTR,intron-Distal,intron-Proximal5.2372740.26078HepG2DDX3X
chr3130613501130613561+5'-UTR,intron-Distal,intron-Proximal4.107734.67299K562DDX24
chr3130613453130613508+5'-UTR,intron-Distal,intron-Proximal3.588363.86479HepG2PRPF8
chr3130613513130613575+5'-UTR,intron-Distal,intron-Proximal4.0588111.08359K562AQR
chr3130648763130648852+5'-UTR,intron-Distal4.058413.62366HepG2HNRNPM
chr3130613188130613294+5'-UTR,intron-Distal,intron-Proximal5.0400712.70303K562AQR
chr3130613433130613485+5'-UTR,intron-Distal,intron-Proximal4.4443013.61575HepG2DDX3X
chr3130612996130613087+5'-UTR,intron-Distal4.214177.26220HepG2PCBP2
chr3130648779130648876+5'-UTR,intron-Distal4.503335.31505K562HNRNPM
chr3130613155130613219+5'-UTR,intron-Distal,intron-Proximal3.854906.74268HepG2PRPF8
chr3130613470130613586+5'-UTR,intron-Distal,intron-Proximal4.795276.03362HepG2AQR
chr3130613548130613573+5'-UTR,intron-Distal,intron-Proximal4.001276.15796HepG2DDX3X
chr3130613258130613313+5'-UTR,intron-Distal,intron-Proximal4.844676.35567HepG2PRPF8
chr3130686185130686264+CDS,intron-Proximal3.9462410.78406HepG2BCLAF1
chr3130659492130659537+CDS,intron-Proximal3.411824.85828HepG2BCLAF1
chr3130698041130698113+CDS,intron-Distal,intron-Proximal4.268386.99120K562AQR
chr3130678123130678151+CDS4.220393.02457HepG2BCLAF1
chr3130672676130672814+CDS3.397406.09767K562UCHL5
chr3130694330130694395+CDS,intron-Proximal5.6557715.88168K562AQR
chr3130688135130688154+CDS,intron-Proximal4.567344.34038HepG2BCLAF1
chr3130678070130678167+CDS,intron-Proximal4.162135.16342K562SF3B4
chr3130686021130686084+CDS3.734406.36847HepG2BCLAF1
chr3130682832130682941+CDS,intron-Proximal4.439936.36347HepG2PPIG
chr3130653478130653550+CDS3.589475.21950K562DDX24
chr3130694199130694296+CDS4.6850610.80414HepG2BCLAF1
chr3130683870130683892+CDS,intron-Proximal3.241303.27569HepG2BCLAF1
chr3130672665130672788+CDS3.236273.34359K562SND1
chr3130682803130682860+CDS,intron-Proximal3.496163.65452K562BUD13
chr3130644364130644432+intron-Distal3.167983.43829K562EXOSC5
chr3130711545130711629+intron-Distal3.001243.48890K562KHSRP
chr3130680301130680388+intron-Distal3.307684.97118HepG2U2AF2
chr3130685750130685803+intron-Distal3.180013.48890K562KHSRP
chr3130632125130632198+intron-Distal5.8916619.42338HepG2CSTF2
chr3130669225130669308+intron-Distal4.271575.19823K562KHSRP
chr3130709556130709655+intron-Distal4.884186.45442HepG2HNRNPM
chr3130680136130680186+intron-Distal4.466594.45977HepG2U2AF2
chr3130685183130685237+intron-Distal4.557525.62258K562KHSRP
chr3130685444130685591+intron-Distal4.2445719.02765K562KHSRP
chr3130622506130622602+intron-Distal4.393086.11515K562PTBP1
chr3130689237130689326+intron-Distal3.382737.99200K562AGGF1
chr3130672086130672192+intron-Distal5.2105710.49617K562KHSRP
chr3130644373130644455+intron-Distal3.829813.04224HepG2SUGP2
chr3130660094130660180+intron-Distal4.056053.69425K562TARDBP
chr3130684914130685018+intron-Distal3.123975.34873K562KHSRP
chr3130644374130644470+intron-Distal4.429905.31171K562HNRNPM
chr3130672231130672303+intron-Distal4.660115.13577HepG2U2AF2
chr3130724796130724865+intron-Distal4.336155.08344K562TARDBP
chr3130685504130685569+intron-Distal3.002263.04623HepG2KHSRP
chr3130622508130622610+intron-Distal5.000907.34252HepG2PCBP2
chr3130685591130685703+intron-Distal5.165688.24653K562KHSRP
chr3130672505130672608+intron-Distal,intron-Proximal3.786905.32884K562KHSRP
chr3130722221130722289+intron-Distal4.218803.50357HepG2QKI
chr3130668982130669078+intron-Distal3.309497.01633K562KHSRP
chr3130622497130622618+intron-Distal6.0520415.27759HepG2PTBP1
chr3130645657130645706+intron-Distal3.762643.19026HepG2HNRNPL
chr3130698274130698363+intron-Distal,intron-Proximal3.720303.02234K562KHSRP
chr3130673126130673188+intron-Distal3.992463.66668K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATP2C1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATP2C1 is not available on ENCORE database.

  • 93 RBPs can affect the levels of ATP2C1.  








The Knockdown/knockout RNA-Seq assay for ATP2C1 is not available on ENCORE database.





93 RBPs can affect the gene expression of ATP2C1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATP2C1ENSG00000017260.151060.984201385.27400-0.384802.994401.95910HepG2ADAR
ATP2C1ENSG00000017260.151412.506301944.55470-0.461204.000603.06280HepG2ASCC1
ATP2C1ENSG00000017260.15823.344001508.77900-0.873809.234007.47510HepG2BCCIP
ATP2C1ENSG00000017260.15991.693401311.09420-0.402802.493201.63990HepG2BCLAF1
ATP2C1ENSG00000017260.151106.316801847.44990-0.739809.470908.11310HepG2CIRBP
ATP2C1ENSG00000017260.151209.699401681.70790-0.475309.900408.79930HepG2CKAP4
ATP2C1ENSG00000017260.15848.169601176.21270-0.471703.944003.13630HepG2CPSF6
ATP2C1ENSG00000017260.151158.122601420.57180-0.294703.046701.97660HepG2YBX3
ATP2C1ENSG00000017260.151219.863101555.65910-0.350805.452704.33480HepG2DDX19B
ATP2C1ENSG00000017260.151171.138601422.57080-0.280602.662801.52820HepG2DDX1
ATP2C1ENSG00000017260.151165.346601609.26160-0.465607.525406.51100HepG2DKC1
ATP2C1ENSG00000017260.15884.279201382.56660-0.6448015.3792013.96720HepG2DNAJC2
ATP2C1ENSG00000017260.15836.468001205.28430-0.527004.519303.36700HepG2EEF2
ATP2C1ENSG00000017260.151267.563601859.12530-0.552605.347204.53990HepG2EIF2S1
ATP2C1ENSG00000017260.15978.419701289.29500-0.398104.039702.76140HepG2EIF3G
ATP2C1ENSG00000017260.15989.440902054.63410-1.0542015.0250013.55250HepG2EIF4A3
ATP2C1ENSG00000017260.151454.218702000.31800-0.460002.845602.14920HepG2EIF4B
ATP2C1ENSG00000017260.151777.726802063.74580-0.215202.074301.33190HepG2EIF4G1
ATP2C1ENSG00000017260.152546.775801976.988200.365303.013402.16430HepG2EIF4G2
ATP2C1ENSG00000017260.152220.530202542.02600-0.195101.876301.36060HepG2ETF1
ATP2C1ENSG00000017260.151341.606501643.68280-0.293002.405601.62810HepG2EWSR1
ATP2C1ENSG00000017260.15924.659101301.15850-0.492805.321403.81380HepG2FASTKD2
ATP2C1ENSG00000017260.15828.882001061.73460-0.357202.750001.96710HepG2FUBP3
ATP2C1ENSG00000017260.151611.256902072.79140-0.363402.750702.06120HepG2FXR1
ATP2C1ENSG00000017260.151568.918702041.28580-0.379703.020002.08920HepG2G3BP2
ATP2C1ENSG00000017260.15465.691001408.28240-1.5965039.1614037.29080HepG2HNRNPA1
ATP2C1ENSG00000017260.15856.579501566.44220-0.8708014.0076012.56310HepG2HNRNPC
ATP2C1ENSG00000017260.151037.019001353.84710-0.384603.885103.04930HepG2HNRNPF
ATP2C1ENSG00000017260.15876.747701946.85480-1.1509022.8236021.00060HepG2HNRNPK
ATP2C1ENSG00000017260.151432.558501905.89020-0.411904.103803.29540HepG2HNRNPL
ATP2C1ENSG00000017260.15827.987501073.15020-0.374203.062702.06360HepG2HNRNPM
ATP2C1ENSG00000017260.151208.715901556.08670-0.364405.198104.38790HepG2HNRNPU
ATP2C1ENSG00000017260.151130.575701589.49300-0.4915010.710709.36800HepG2ILF2
ATP2C1ENSG00000017260.151005.720101548.61460-0.622707.483905.56180HepG2LIN28B
ATP2C1ENSG00000017260.151259.949402073.51400-0.718708.642507.49900HepG2MAGOH
ATP2C1ENSG00000017260.151381.841302134.30960-0.627206.504305.55100HepG2NCBP2
ATP2C1ENSG00000017260.151582.776302074.55370-0.390304.231203.28800HepG2NOL12
ATP2C1ENSG00000017260.151528.057301883.82060-0.302004.043803.33760HepG2PCBP1
ATP2C1ENSG00000017260.15576.32120809.13940-0.489504.718103.12600HepG2PKM
ATP2C1ENSG00000017260.151100.977701387.90700-0.334103.648402.81450HepG2PPIL4
ATP2C1ENSG00000017260.151314.847101916.84080-0.5438010.454409.52260HepG2PTBP1
ATP2C1ENSG00000017260.151256.720601980.25010-0.6560010.319109.26640HepG2PUF60
ATP2C1ENSG00000017260.151830.357702102.01400-0.199602.586402.00830HepG2PUM1
ATP2C1ENSG00000017260.151029.035001713.26740-0.7355020.2735018.88110HepG2PUS1
ATP2C1ENSG00000017260.151731.284902076.02230-0.262002.628302.01660HepG2QKI
ATP2C1ENSG00000017260.15993.910801510.41450-0.603803.192402.43900HepG2RAVER1
ATP2C1ENSG00000017260.151197.619001778.44340-0.570406.086804.60870HepG2RBM27
ATP2C1ENSG00000017260.15902.851501444.17430-0.677706.530004.89350HepG2RCC2
ATP2C1ENSG00000017260.151680.352002133.27400-0.344305.056804.36180HepG2NELFE
ATP2C1ENSG00000017260.151436.116401986.82910-0.468308.683107.68360HepG2RECQL
ATP2C1ENSG00000017260.151102.854501458.65000-0.403404.044403.24410HepG2RPLP0
ATP2C1ENSG00000017260.151098.033801483.29020-0.433902.275801.41770HepG2RPS10
ATP2C1ENSG00000017260.15636.32450952.05160-0.581306.178705.30170HepG2RPS19
ATP2C1ENSG00000017260.151159.179801640.20100-0.500804.867903.82440HepG2RPS2
ATP2C1ENSG00000017260.151280.890901674.28400-0.386403.062201.93030HepG2RPS5
ATP2C1ENSG00000017260.151146.431401385.77080-0.273503.247302.56020HepG2SAFB2
ATP2C1ENSG00000017260.151026.960101259.46370-0.294401.937301.34010HepG2SF3B1
ATP2C1ENSG00000017260.151537.662701995.70930-0.376205.855005.04860HepG2SF3B4
ATP2C1ENSG00000017260.151537.802301898.52750-0.304005.174504.26340HepG2SLBP
ATP2C1ENSG00000017260.151241.197501616.05450-0.380706.835305.89430HepG2SMN1
ATP2C1ENSG00000017260.151089.793001538.88350-0.497803.272502.22150HepG2SMNDC1
ATP2C1ENSG00000017260.151955.328202399.81050-0.295503.862403.30020HepG2SRFBP1
ATP2C1ENSG00000017260.151651.680701955.07800-0.243303.115102.45630HepG2SRSF5
ATP2C1ENSG00000017260.15987.590301330.16200-0.429606.493105.49940HepG2SRSF7
ATP2C1ENSG00000017260.151409.078602083.69050-0.5644010.592609.71560HepG2SSB
ATP2C1ENSG00000017260.15679.261801512.07240-1.1545029.2211027.91180HepG2TIAL1
ATP2C1ENSG00000017260.151160.552201525.54260-0.394505.850905.08470HepG2TRIM56
ATP2C1ENSG00000017260.151613.170601934.44260-0.262002.388201.58050HepG2TUFM
ATP2C1ENSG00000017260.151004.902301330.51130-0.404903.052802.39440HepG2U2AF1
ATP2C1ENSG00000017260.15865.945501737.99280-1.005103.222302.15730HepG2U2AF2
ATP2C1ENSG00000017260.15883.887901352.45010-0.613603.655902.48840HepG2UPF2
ATP2C1ENSG00000017260.151026.648001380.72090-0.427506.309705.46580HepG2UTP3
ATP2C1ENSG00000017260.151125.445201660.84500-0.561403.845202.59490HepG2XRCC6
ATP2C1ENSG00000017260.15750.306301453.71620-0.9542012.6102011.08700HepG2XRN2
ATP2C1ENSG00000017260.151802.068201572.854900.196202.393201.87350HepG2ZNF622
ATP2C1ENSG00000017260.151844.485401596.881000.207902.251101.73080K562AGGF1
ATP2C1ENSG00000017260.151679.835402318.78450-0.465005.267704.50320K562AQR
ATP2C1ENSG00000017260.151376.948701708.12540-0.310903.603002.33350K562CPEB4
ATP2C1ENSG00000017260.15935.828901205.45970-0.365302.731001.82400K562EFTUD2
ATP2C1ENSG00000017260.151096.895001337.47570-0.286103.015701.74240K562EIF2S1
ATP2C1ENSG00000017260.151200.882201500.56270-0.321403.561802.76200K562EIF2S2
ATP2C1ENSG00000017260.15889.758401272.10800-0.515705.341304.20240K562EIF4A3
ATP2C1ENSG00000017260.15849.959701110.43220-0.385703.784002.23850K562EWSR1
ATP2C1ENSG00000017260.151781.587601377.399500.371102.134501.52540K562G3BP2
ATP2C1ENSG00000017260.15528.334801060.52070-1.0052016.4709015.09410K562HNRNPC
ATP2C1ENSG00000017260.151035.603301618.66430-0.644307.171205.10190K562HNRNPK
ATP2C1ENSG00000017260.15744.387901066.77230-0.519103.939402.81500K562HNRNPM
ATP2C1ENSG00000017260.151278.664201647.93040-0.366003.272601.94640K562IGF2BP3
ATP2C1ENSG00000017260.152237.917301763.370800.343703.312102.40100K562KIF1C
ATP2C1ENSG00000017260.15786.932401075.70400-0.451003.360301.70880K562LIN28B
ATP2C1ENSG00000017260.15722.86640945.75230-0.387703.155701.49340K562LSM11
ATP2C1ENSG00000017260.151412.779001703.08990-0.269602.103001.36550K562MAGOH
ATP2C1ENSG00000017260.15797.007701015.45330-0.349502.677901.81940K562METAP2
ATP2C1ENSG00000017260.15767.436801044.25240-0.444402.887501.41930K562NUSAP1
ATP2C1ENSG00000017260.151476.882701165.252000.341802.209101.46680K562PCBP3
ATP2C1ENSG00000017260.15617.65230950.88030-0.622505.664004.29730K562PSIP1
ATP2C1ENSG00000017260.15936.692401654.61270-0.8208013.5787012.16310K562PTBP1
ATP2C1ENSG00000017260.152342.984402893.90510-0.304702.245501.51130K562PUF60
ATP2C1ENSG00000017260.152021.927901605.608000.332504.076603.37410K562RBM15
ATP2C1ENSG00000017260.151094.001201586.91090-0.536606.016004.71500K562RBM22
ATP2C1ENSG00000017260.15603.35530867.61470-0.524005.068503.72360K562RCC2
ATP2C1ENSG00000017260.15574.46850822.46940-0.517704.299802.93970K562SRFBP1
ATP2C1ENSG00000017260.15774.86040988.04410-0.350602.616201.59880K562SRSF4
ATP2C1ENSG00000017260.152135.659501701.598100.327702.613001.30230K562SSRP1
ATP2C1ENSG00000017260.151157.918201641.72140-0.503705.005204.03830K562TARDBP
ATP2C1ENSG00000017260.151219.283901583.58680-0.377203.864602.87530K562TIA1
ATP2C1ENSG00000017260.15781.85110971.69010-0.313602.133401.31810K562TRIM56
ATP2C1ENSG00000017260.15927.655501224.06230-0.400003.010501.72890K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATP2C1 is not available on ENCORE database.





14 RBPs can affect the splicing of ATP2C1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATP2C1ENSG00000017260.15chr3+130698092130698263130694175130694332130699425130699523-0.618000.000000.00000excludedK562SRSF1
SEATP2C1ENSG00000017260.15chr3+130686173130686263130685988130686084130688135130688240-0.091000.005190.07624excludedK562SF3B4
SEATP2C1ENSG00000017260.15chr3+1306803381306804391306781181306781851306828141306829390.072000.000210.00733includedHepG2HNRNPK
SEATP2C1ENSG00000017260.15chr3+130699425130699523130694175130694332130711794130711845-0.277000.000000.00019excludedHepG2HNRNPK
SEATP2C1ENSG00000017260.15chr3+130685988130686084130683791130683889130711794130711845-0.137000.000040.00068excludedK562AQR
SEATP2C1ENSG00000017260.15chr3+130698092130698263130694175130694332130699425130699523-0.159000.000180.00982excludedK562FXR1
SEATP2C1ENSG00000017260.15chr3+130699425130699523130694175130694332130711794130711845-0.091000.000940.01619excludedK562PUS1
SEATP2C1ENSG00000017260.15chr3+130698092130698263130694175130694332130699425130699523-0.122000.001210.07662excludedHepG2HNRNPL
SEATP2C1ENSG00000017260.15chr3+130698092130698263130694175130694332130699425130699523-0.464000.000000.00000excludedHepG2SRSF1
SEATP2C1ENSG00000017260.15chr3+130699425130699523130694175130694332130711794130711845-0.109000.000220.00925excludedHepG2SF3A3
SEATP2C1ENSG00000017260.15chr3+1306803381306804391306781181306781851306828141306829390.124000.000010.00090includedK562TARDBP
SEATP2C1ENSG00000017260.15chr3+130686173130686263130685988130686084130688135130688240-0.079000.002190.06801excludedK562TARDBP
SEATP2C1ENSG00000017260.15chr3+130699425130699523130694175130694332130711794130711845-0.077000.004120.07917excludedK562RBM15
SEATP2C1ENSG00000017260.15chr3+130699425130699523130694175130694332130711794130711845-0.101000.000400.01348excludedK562AGGF1
SEATP2C1ENSG00000017260.15chr3+130699425130699523130694175130694332130711794130711845-0.107000.000850.03369excludedHepG2HNRNPC
SEATP2C1ENSG00000017260.15chr3+1306803381306804391306781181306781851306828141306829390.065000.000990.05988includedHepG2SRSF9
A5SSATP2C1ENSG00000017260.15chr3+1307200631307202541307200631307201881307349951307355280.175000.000200.04105longerHepG2HNRNPU
MXEATP2C1ENSG00000017260.15chr3+130698092130698263130698956130699065130694175130694332130699425130699523-0.055000.006630.081702includedK562SRSF1
MXEATP2C1ENSG00000017260.15chr3+1306994251306995231307117941307118451306941751306943321307127751307129420.079000.000950.019051includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATP2C1 is not avaliable on ENCORE database.