ENCORE RBNS:SRSF4

Experiment Information (Status: Released)


RBP	SRSF4
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	68

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
SRSF4-mockPD	CN	20-20	0	SRSF4_0.fastq.gz
SRSF4-1300	RBNS	20-20	1300	SRSF4_1300.fastq.gz
SRSF4-20	RBNS	20-20	20	SRSF4_20.fastq.gz
SRSF4-320	RBNS	20-20	320	SRSF4_320.fastq.gz
SRSF4-5	RBNS	20-20	5	SRSF4_5.fastq.gz
SRSF4-80	RBNS	20-20	80	SRSF4_80.fastq.gz
SRSF4-input	CN	20-20	0	SRSF4_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	ID
chris-burge:SRSF4	ENCSR252RIJ	experiment	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-12	ENCODE3	8122
chris-burge:SRSF4-input-cntl	ENCSR234LUY	experiment	RNA Bind-n-Seq	SRSF4	EIF2B3-BGHcLV16-24	Yes	Released	2022-07-12	ENCODE3	8123
chris-burge:SRSF4-mockPD-cntl	ENCSR289FYJ	experiment	RNA Bind-n-Seq	SRSF4	NT-BGHcLV16-2	Yes	Released	2022-07-12	ENCODE3	8124
chris-burge:lib-SRSF4-1	ENCLB630MIH	library	RNA Bind-n-Seq	SRSF4	DICER1-BGHcLV16-14	Yes	Released	2022-07-12	ENCODE3	8556
chris-burge:lib-SRSF4-2	ENCLB312IAH	library	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-12	Yes	Released	2022-07-12	ENCODE3	8557
chris-burge:lib-SRSF4-3	ENCLB248OHQ	library	RNA Bind-n-Seq	SRSF4	EIF2B3-BGHcLV16-23	Yes	Released	2022-07-12	ENCODE3	8558
chris-burge:lib-SRSF4-4	ENCLB317ZYV	library	RNA Bind-n-Seq	SRSF4	DICER1-BGHcLV16-13	Yes	Released	2022-07-12	ENCODE3	8559
chris-burge:lib-SRSF4-5	ENCLB837CNI	library	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-12	ENCODE3	8560
chris-burge:lib-SRSF4-input-cntl	ENCLB429MOZ	library	RNA Bind-n-Seq	SRSF4	EIF2B3-BGHcLV16-24	Yes	Released	2022-07-12	ENCODE3	8561
chris-burge:lib-SRSF4-mockPD-cntl	ENCLB361KDG	library	RNA Bind-n-Seq	SRSF4	NT-BGHcLV16-2	Yes	Released	2022-07-12	ENCODE3	8562
chris-burge:SRSF4_enrichment_R.4mers.txt	ENCFF298ZWZ	file_enrichment	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9481
chris-burge:SRSF4_enrichment_R.5mers.txt	ENCFF185UAE	file_enrichment	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9482
chris-burge:SRSF4_enrichment_R.6mers.txt	ENCFF975KOB	file_enrichment	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9483
chris-burge:SRSF4_enrichment_R.7mers.txt	ENCFF166TCK	file_enrichment	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9484
chris-burge:SRSF4_est_binding_frac.4mers.txt	ENCFF661GML	file_library-fraction	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9485
chris-burge:SRSF4_est_binding_frac.5mers.txt	ENCFF225NRS	file_library-fraction	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9486
chris-burge:SRSF4_est_binding_frac.6mers.txt	ENCFF908WYK	file_library-fraction	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9487
chris-burge:SRSF4_est_binding_frac.7mers.txt	ENCFF773PVD	file_library-fraction	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9488
chris-burge:SRSF4_0.fastq.gz	ENCFF637PAB	file_fastq	RNA Bind-n-Seq	SRSF4	XRCC6-BGHcLV16-59	Yes	Released	2022-07-14	ENCODE3	9700
chris-burge:SRSF4_1300.fastq.gz	ENCFF659GOB	file_fastq	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-11	Yes	Released	2022-07-14	ENCODE3	9701
chris-burge:SRSF4_20.fastq.gz	ENCFF707DGD	file_fastq	RNA Bind-n-Seq	SRSF4	CD3EAP-BGHcLV16-12	Yes	Released	2022-07-14	ENCODE3	9702
chris-burge:SRSF4_320.fastq.gz	ENCFF424VHK	file_fastq	RNA Bind-n-Seq	SRSF4	DICER1-BGHcLV16-13	Yes	Released	2022-07-14	ENCODE3	9703
chris-burge:SRSF4_5.fastq.gz	ENCFF695JWD	file_fastq	RNA Bind-n-Seq	SRSF4	DICER1-BGHcLV16-14	Yes	Released	2022-07-14	ENCODE3	9704
chris-burge:SRSF4_80.fastq.gz	ENCFF801NRU	file_fastq	RNA Bind-n-Seq	SRSF4	EIF2B3-BGHcLV16-23	Yes	Released	2022-07-14	ENCODE3	9705
chris-burge:SRSF4_input.fastq.gz	ENCFF472NVZ	file_fastq	RNA Bind-n-Seq	SRSF4	EIF2B3-BGHcLV16-24	Yes	Released	2022-07-14	ENCODE3	9706

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project
SRSF4.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
SRSF4_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SRSF4_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF4_0.fastq.gz,SRSF4_input.fastq.gz	ENCODE3
SRSF4_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF4_0.fastq.gz,SRSF4_input.fastq.gz	ENCODE3
SRSF4_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF4_0.fastq.gz,SRSF4_input.fastq.gz	ENCODE3
SRSF4_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF4_0.fastq.gz,SRSF4_input.fastq.gz	ENCODE3
SRSF4_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SRSF4_0.fastq.gz,SRSF4_input.fastq.gz	ENCODE3
SRSF4_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SRSF4_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF4_0.fastq.gz,SRSF4_1300.fastq.gz,SRSF4_20.fastq.gz,SRSF4_320.fastq.gz,SRSF4_5.fastq.gz,SRSF4_80.fastq.gz,SRSF4_input.fastq.gz		ENCODE3
SRSF4_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF4_0.fastq.gz,SRSF4_1300.fastq.gz,SRSF4_20.fastq.gz,SRSF4_320.fastq.gz,SRSF4_5.fastq.gz,SRSF4_80.fastq.gz,SRSF4_input.fastq.gz		ENCODE3
SRSF4_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF4_0.fastq.gz,SRSF4_1300.fastq.gz,SRSF4_20.fastq.gz,SRSF4_320.fastq.gz,SRSF4_5.fastq.gz,SRSF4_80.fastq.gz,SRSF4_input.fastq.gz		ENCODE3
SRSF4_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF4_0.fastq.gz,SRSF4_1300.fastq.gz,SRSF4_20.fastq.gz,SRSF4_320.fastq.gz,SRSF4_5.fastq.gz,SRSF4_80.fastq.gz,SRSF4_input.fastq.gz		ENCODE3
SRSF4_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF4_0.fastq.gz,SRSF4_1300.fastq.gz,SRSF4_20.fastq.gz,SRSF4_320.fastq.gz,SRSF4_5.fastq.gz,SRSF4_80.fastq.gz,SRSF4_input.fastq.gz		ENCODE3
SRSF4_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF4_0.fastq.gz,SRSF4_1300.fastq.gz,SRSF4_20.fastq.gz,SRSF4_320.fastq.gz,SRSF4_5.fastq.gz,SRSF4_80.fastq.gz,SRSF4_input.fastq.gz		ENCODE3
SRSF4_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF4_0.fastq.gz,SRSF4_1300.fastq.gz,SRSF4_20.fastq.gz,SRSF4_320.fastq.gz,SRSF4_5.fastq.gz,SRSF4_80.fastq.gz,SRSF4_input.fastq.gz		ENCODE3
SRSF4_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF4_0.fastq.gz,SRSF4_1300.fastq.gz,SRSF4_20.fastq.gz,SRSF4_320.fastq.gz,SRSF4_5.fastq.gz,SRSF4_80.fastq.gz,SRSF4_input.fastq.gz		ENCODE3