NUB1

General Information

Gene Name       : NUB1
Gene ID             : ENSG00000013374.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NUB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NUB1ENSG00000013374.16111.8469.4490.64ENCSR000AEF
HepG2NUB1ENSG00000013374.1623.9140.3132.11ENCSR985KAT
K562NUB1ENSG00000013374.1662.47107.0984.78ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NUB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NUB1 RNA is bound by 16 proteins.  







eCLIP assay for NUB1 is not avaliable on ENCORE database.





16 proteins are bound to NUB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7151074408151074506+3'-UTR3.327519.15563K562FAM120A
chr7151075146151075251+3'-UTR4.485546.88705HepG2SUB1
chr7151075217151075266+3'-UTR3.118254.97511K562YBX3
chr7151052997151053036+3'-UTR,CDS3.353485.15500HepG2BCLAF1
chr7151074648151074736+3'-UTR3.038479.88800K562UPF1
chr7151074665151074785+3'-UTR4.239967.84191HepG2UPF1
chr7151075266151075283+3'-UTR3.737853.02250K562YBX3
chr7151074930151075011+3'-UTR4.8594712.67045K562UPF1
chr7151074756151074885+3'-UTR3.564338.31066K562FAM120A
chr7151075283151075336+3'-UTR3.795593.46958K562YBX3
chr7151052907151052989+3'-UTR,CDS4.1322311.37918K562UCHL5
chr7151075060151075104+3'-UTR3.010187.14729K562UPF1
chr7151057538151057594+3'-UTR,intron-Distal3.104517.83509K562PUM2
chr7151053211151053306+3'-UTR,CDS,intron-Proximal3.7409015.02985K562UCHL5
chr7151074523151074569+3'-UTR4.247506.48274K562UPF1
chr7151074412151074556+3'-UTR4.4260810.07606HepG2UPF1
chr7151057298151057376+3'-UTR,CDS,intron-Proximal4.765239.43475HepG2PRPF8
chr7151075284151075332+3'-UTR3.844196.55257K562UPF1
chr7151075432151075488+3'-UTR4.491918.66095K562UPF1
chr7151074540151074585+3'-UTR3.003114.74027K562YBX3
chr7151074677151074735+3'-UTR4.012073.43253K562YBX3
chr7151057228151057320+3'-UTR,CDS4.064618.48086K562UCHL5
chr7151075374151075389+3'-UTR4.510183.54010K562UPF1
chr7151057324151057334+3'-UTR,CDS,intron-Proximal4.186953.06853K562LIN28B
chr7151042433151042464+5'-UTR,CDS,intron-Proximal3.165473.38111K562DDX3X
chr7151038899151038935+5'-UTR,CDS,intron-Proximal5.352675.39850K562DDX3X
chr7151042434151042458+5'-UTR,CDS4.755566.29310K562ZNF622
chr7151048567151048578+CDS,intron-Proximal3.533644.88100K562AQR
chr7151064192151064210+CDS3.613885.03335K562UCHL5
chr7151042527151042552+CDS3.103355.71803K562UCHL5
chr7151046267151046323+CDS3.644656.39464HepG2BCLAF1
chr7151042470151042527+CDS3.381557.50303K562UCHL5
chr7151042468151042536+CDS3.761624.46864HepG2BCLAF1
chr7151073833151073898+CDS,intron-Proximal3.193853.54074K562RBM15
chr7151071257151071288+CDS,intron-Distal,intron-Proximal3.086453.13705K562BUD13
chr7151064172151064214+CDS,intron-Proximal3.530343.68471HepG2BCLAF1
chr7151065874151065919+CDS3.272905.23038K562ZNF622
chr7151064998151065032+CDS3.267143.17151K562UCHL5
chr7151073023151073129+CDS,intron-Proximal4.366173.31283K562PRPF8
chr7151064970151065031+CDS3.498593.27569HepG2BCLAF1
chr7151064022151064087+CDS,intron-Proximal4.844117.09479K562LIN28B
chr7151048508151048567+CDS,intron-Proximal3.609794.74886HepG2BCLAF1
chr7151042475151042550+CDS3.8127714.75114K562ZNF622
chr7151073863151073898+CDS,intron-Proximal3.324664.74755K562ZNF622
chr7151069701151069863+intron-Distal3.183713.35563K562FUS
chr7151039071151039193+intron-Distal,intron-Proximal5.343296.63358K562EFTUD2
chr7151048578151048611+intron-Proximal3.746186.32052K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NUB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NUB1 is not available on ENCORE database.

  • 50 RBPs can affect the levels of NUB1.  








The Knockdown/knockout RNA-Seq assay for NUB1 is not available on ENCORE database.





50 RBPs can affect the gene expression of NUB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NUB1ENSG00000013374.111053.55430854.538400.301903.237202.58730HepG2ACO1
NUB1ENSG00000013374.11858.298501319.54300-0.620507.103806.19700HepG2BOP1
NUB1ENSG00000013374.111010.34710854.470900.241602.307001.69080HepG2CKAP4
NUB1ENSG00000013374.11949.984001170.27570-0.300903.579302.75570HepG2DAZAP1
NUB1ENSG00000013374.11567.63580790.37990-0.477606.324905.14250HepG2DDX19B
NUB1ENSG00000013374.111085.573401355.20220-0.320101.979401.44140HepG2DDX3X
NUB1ENSG00000013374.11972.67350817.592300.250502.052201.45530HepG2DKC1
NUB1ENSG00000013374.11564.45370741.37580-0.393303.539302.75060HepG2DNAJC21
NUB1ENSG00000013374.11718.628601119.11880-0.639005.961705.10780HepG2EIF2S1
NUB1ENSG00000013374.11925.351601236.70040-0.418402.616001.99340HepG2EIF4A3
NUB1ENSG00000013374.111632.665601361.305400.262102.782202.17970HepG2ETF1
NUB1ENSG00000013374.11967.85700748.478100.370702.599001.97050HepG2HNRNPA1
NUB1ENSG00000013374.11912.444801066.03160-0.224402.092001.49510HepG2HNRNPL
NUB1ENSG00000013374.111033.290001310.56580-0.342902.275701.69900HepG2HNRNPLL
NUB1ENSG00000013374.11823.097501176.60970-0.515504.303703.47810HepG2IGF2BP2
NUB1ENSG00000013374.11912.965101248.38910-0.451403.432702.70160HepG2MAGOH
NUB1ENSG00000013374.11689.692501284.89540-0.8976010.817209.60640HepG2NCBP2
NUB1ENSG00000013374.111521.288601162.028700.388503.290702.47530HepG2NSUN2
NUB1ENSG00000013374.11916.060901169.23140-0.352004.001703.29960HepG2PCBP1
NUB1ENSG00000013374.11801.48610585.139700.453803.468702.57450HepG2PRPF8
NUB1ENSG00000013374.11882.583501189.78250-0.430905.518704.80120HepG2PTBP1
NUB1ENSG00000013374.111737.891801398.964500.312903.064402.16610HepG2RBM15
NUB1ENSG00000013374.111098.633901324.07560-0.269302.501901.98310HepG2NELFE
NUB1ENSG00000013374.11982.55290759.002100.372303.000002.36380HepG2RPS19
NUB1ENSG00000013374.111057.269401238.63500-0.228401.884501.38060HepG2SF3B4
NUB1ENSG00000013374.112677.268101443.386900.891208.165606.82320HepG2SNRNP70
NUB1ENSG00000013374.111734.894501285.088600.432907.293406.58610HepG2SRFBP1
NUB1ENSG00000013374.111113.28750754.854400.560504.865204.00740HepG2SUPV3L1
NUB1ENSG00000013374.11888.663201277.25520-0.523305.064904.12710HepG2TARDBP
NUB1ENSG00000013374.111663.636301103.235300.592506.502905.55660HepG2U2AF1
NUB1ENSG00000013374.11841.208901147.56660-0.448006.549705.54970HepG2UPF1
NUB1ENSG00000013374.11775.921501001.75380-0.368504.457003.63640HepG2ZC3H8
NUB1ENSG00000013374.11942.830201262.10390-0.420806.986506.22100HepG2ZNF622
NUB1ENSG00000013374.115663.141504318.101100.391109.792708.80770K562AGGF1
NUB1ENSG00000013374.115325.350204493.229800.245002.221501.63400K562AKAP8L
NUB1ENSG00000013374.112335.967503223.56220-0.464605.602504.81830K562AQR
NUB1ENSG00000013374.115933.837104714.573800.331705.531204.18710K562ATP5C1
NUB1ENSG00000013374.114568.492004028.094500.181502.221501.62750K562DDX47
NUB1ENSG00000013374.115927.464004834.724500.293904.878103.66290K562DKC1
NUB1ENSG00000013374.113782.752604374.83590-0.209802.900501.94040K562EIF4G2
NUB1ENSG00000013374.111989.164902499.31710-0.329402.273301.71600K562FXR1
NUB1ENSG00000013374.113355.057602515.535400.415402.748202.04400K562G3BP2
NUB1ENSG00000013374.112936.231503640.38820-0.310103.165902.02870K562HNRNPL
NUB1ENSG00000013374.114934.262003463.257300.510606.556505.34620K562HSPD1
NUB1ENSG00000013374.115688.414804768.265100.254502.643201.83870K562KIF1C
NUB1ENSG00000013374.112002.503402574.32090-0.362403.973102.85210K562MATR3
NUB1ENSG00000013374.111790.452602295.17260-0.358303.456402.36420K562PCBP2
NUB1ENSG00000013374.111995.647202506.15880-0.328603.471402.73860K562PTBP1
NUB1ENSG00000013374.116714.955104455.694900.591609.201308.25990K562PUS1
NUB1ENSG00000013374.115639.651604341.698500.377206.702805.80620K562RBM15
NUB1ENSG00000013374.112599.678803314.26540-0.350407.856606.37200K562SRPK2
NUB1ENSG00000013374.113334.337902456.851300.440506.057805.02000K562SRSF1
NUB1ENSG00000013374.112748.835203394.39720-0.304303.134501.99810K562SRSF4
NUB1ENSG00000013374.112025.178802486.53660-0.296102.222001.58420K562TARDBP
NUB1ENSG00000013374.113574.567902438.558900.551605.514503.86390K562U2AF1
NUB1ENSG00000013374.113196.804102518.439200.344004.280803.28540K562U2AF2
NUB1ENSG00000013374.114413.777503476.255500.344407.286206.18620K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NUB1 is not available on ENCORE database.





14 RBPs can affect the splicing of NUB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENUB1ENSG00000013374.11chr7+151065820151065973151064946151065054151071182151071329-0.063000.001080.02235excludedK562SRSF1
SENUB1ENSG00000013374.11chr7+151046158151046326151042433151042552151048509151048568-0.077000.000050.00319excludedK562PRPF8
SENUB1ENSG00000013374.11chr7+151046158151046326151042430151042552151048509151048568-0.091000.001950.03572excludedHepG2U2AF1
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.115000.000540.06172excludedK562FMR1
SENUB1ENSG00000013374.11chr7+1510491781510492791510485091510485681510498971510499680.140000.000000.00000includedK562AQR
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.096000.012560.09722excludedK562AQR
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.125000.000030.03464excludedK562EXOSC5
SENUB1ENSG00000013374.11chr7+151071182151071329151065820151065973151072933151073029-0.153000.002810.05230excludedK562U2AF1
SENUB1ENSG00000013374.11chr7+151065820151065973151064946151065054151071182151071329-0.131000.000330.01023excludedHepG2SRSF1
SENUB1ENSG00000013374.11chr7+151046158151046326151042430151042552151048509151048568-0.071000.002690.06569excludedHepG2SF3A3
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.206000.000010.00027excludedK562U2AF2
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.102000.000360.01693excludedK562TARDBP
SENUB1ENSG00000013374.11chr7+151046158151046326151042430151042552151048509151048568-0.106000.000000.00000excludedK562HNRNPU
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.105000.000120.00718excludedK562HNRNPU
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.082000.000010.00068excludedK562AGGF1
SENUB1ENSG00000013374.11chr7+151046158151046215151042433151042552151048509151048568-0.114000.000440.02158excludedK562SF3B1
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.128000.000010.00101excludedK562HNRNPK
SENUB1ENSG00000013374.11chr7+151046158151046326151042430151042552151048509151048568-0.148000.000060.00491excludedHepG2HNRNPU
SENUB1ENSG00000013374.11chr7+1510491781510492791510485091510485681510498971510499680.055000.000060.00162includedK562HNRNPC
SENUB1ENSG00000013374.11chr7+151071182151071287151065820151065973151072933151073029-0.139000.000470.01016excludedK562HNRNPC
MXENUB1ENSG00000013374.11chr7+1510461261510462151510485091510485681510424331510425521510498971510499680.059000.000000.000031includedK562AQR
MXENUB1ENSG00000013374.11chr7+1510649461510650541510658201510659731510640241510642111510711821510712870.170000.000010.000211includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NUB1 is not avaliable on ENCORE database.