IFRD1

General Information

Gene Name       : IFRD1
Gene ID             : ENSG00000006652.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: IFRD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878IFRD1ENSG00000006652.1311.0211.4511.23ENCSR000AEF
HepG2IFRD1ENSG00000006652.1319.9830.4925.23ENCSR985KAT
K562IFRD1ENSG00000006652.1352.9444.9648.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for IFRD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • IFRD1 RNA is bound by 22 proteins.  







eCLIP assay for IFRD1 is not avaliable on ENCORE database.





22 proteins are bound to IFRD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7112115794112115903+3'-UTR,intron-Distal4.489835.80843K562CSTF2T
chr7112096104112096142+3'-UTR,CDS,intron-Proximal3.742725.74131HepG2PPIG
chr7112115638112115726+3'-UTR,intron-Distal3.454784.02462K562TIA1
chr7112090716112090799+3'-UTR,5'-UTR,CDS,intron-Distal4.315864.04622HepG2GRWD1
chr7112096101112096142+3'-UTR,CDS,intron-Proximal4.494495.82083HepG2GRWD1
chr7112096109112096142+3'-UTR,CDS,intron-Proximal3.3849711.44572K562ZNF622
chr7112095805112095867+3'-UTR,5'-UTR,CDS,intron-Proximal3.740344.79983HepG2U2AF2
chr7112096112112096194+3'-UTR,CDS,intron-Proximal3.837775.05356HepG2PRPF8
chr7112095804112095861+3'-UTR,5'-UTR,CDS,intron-Proximal4.372227.95735K562U2AF2
chr7112101946112101970+5'-UTR,CDS4.094593.53690K562ZNF622
chr7112102157112102209+5'-UTR,CDS4.296434.69071HepG2GRWD1
chr7112101746112101858+5'-UTR,intron-Distal,intron-Proximal3.270737.68025K562KHSRP
chr7112102053112102157+5'-UTR,CDS,intron-Proximal3.427896.65904HepG2GRWD1
chr7112101917112101995+5'-UTR,CDS,intron-Proximal3.761545.81784K562EFTUD2
chr7112091061112091119+5'-UTR,intron-Distal3.445203.09172K562XRCC6
chr7112098956112099013+CDS3.959638.54758K562ZNF622
chr7112112836112112895+CDS3.495384.34695HepG2BCLAF1
chr7112112292112112375+CDS3.461074.54968K562PUM2
chr7112096966112097017+CDS,intron-Proximal3.284484.23869K562GRWD1
chr7112096052112096109+CDS,intron-Proximal3.7486511.99289K562ZNF622
chr7112096967112097017+CDS,intron-Proximal4.0763011.64153HepG2BCLAF1
chr7112112401112112474+CDS,intron-Proximal4.566318.52787K562AQR
chr7112099015112099084+CDS,intron-Proximal3.050724.07440K562PRPF8
chr7112096128112096179+CDS,intron-Proximal3.334454.57435K562SF3B4
chr7112096968112097007+CDS,intron-Proximal3.048214.91034K562YBX3
chr7112099020112099104+CDS,intron-Proximal4.247314.48994K562RBM15
chr7112112394112112465+CDS,intron-Proximal4.324934.22101K562PRPF8
chr7112099017112099102+CDS,intron-Proximal3.3914210.17627K562EFTUD2
chr7112096968112097000+CDS,intron-Proximal3.334645.47500HepG2PPIG
chr7112108134112108206+CDS,intron-Proximal3.9857413.03969HepG2PRPF8
chr7112097043112097098+CDS,intron-Proximal3.658839.08790HepG2BCLAF1
chr7112112837112112898+CDS3.760343.38114HepG2GRWD1
chr7112096129112096199+CDS,intron-Proximal3.577076.69182K562AQR
chr7112102412112102517+CDS,intron-Distal,intron-Proximal4.495628.91093K562PRPF8
chr7112099013112099085+CDS,intron-Proximal3.724868.82426K562ZNF622
chr7112108122112108175+CDS,intron-Proximal3.337624.61799HepG2BCLAF1
chr7112096052112096104+CDS,intron-Proximal4.073675.86107HepG2PPIG
chr7112115487112115537+CDS,intron-Distal3.078763.67697K562YBX3
chr7112098915112098947+CDS,intron-Proximal3.531783.93645HepG2PPIG
chr7112107974112108056+CDS,intron-Proximal4.8003713.13232K562SF3B4
chr7112112230112112301+CDS,intron-Proximal3.859424.39974K562GPKOW
chr7112097014112097094+CDS,intron-Proximal3.903437.71102K562ZNF622
chr7112096967112097022+CDS,intron-Proximal4.480306.01390HepG2GRWD1
chr7112099048112099140+CDS,intron-Proximal5.022747.36776HepG2PRPF8
chr7112096046112096101+CDS,intron-Proximal4.395423.93061K562U2AF2
chr7112098961112099013+CDS3.680176.60490HepG2BCLAF1
chr7112112379112112440+CDS,intron-Proximal4.440995.05356HepG2PRPF8
chr7112112224112112311+CDS,intron-Proximal3.388778.58414K562SF3B4
chr7112099016112099097+CDS,intron-Proximal3.151905.31320K562GPKOW
chr7112112312112112352+CDS3.593114.09885HepG2BCLAF1
chr7112107627112107908+intron-Distal4.0249410.36009HepG2KHSRP
chr7112103947112104029+intron-Distal5.1895916.88085K562HNRNPL
chr7112107760112107928+intron-Distal4.4770013.15655K562KHSRP
chr7112096175112096336+intron-Distal,intron-Proximal3.905957.77021K562KHSRP
chr7112099801112099829+intron-Distal5.106067.79026K562TIA1
chr7112099084112099180+intron-Distal,intron-Proximal3.6187412.48765K562PRPF8
chr7112099747112099770+intron-Distal3.621973.03253HepG2TIA1
chr7112099102112099219+intron-Distal,intron-Proximal3.024577.06642K562EFTUD2
chr7112113109112113193+intron-Distal4.021133.60944K562TARDBP
chr7112090857112090919+intron-Distal,intron-Proximal4.153705.05259HepG2RBM22
chr7112103955112104054+intron-Distal3.477008.15672HepG2HNRNPL
chr7112103945112104062+intron-Distal5.3011315.94588K562AGGF1
chr7112105575112105631+intron-Distal4.181159.52029K562KHSRP
chr7112103168112103243+intron-Distal3.805263.66668K562KHSRP
chr7112109080112109173+intron-Distal6.4484812.12797K562ZRANB2
chr7112090837112090913+intron-Distal,intron-Proximal3.565704.88100K562AQR
chr7112103859112103955+intron-Distal5.3817713.56318HepG2HNRNPL
chr7112099722112099748+intron-Distal3.958593.45860K562TIA1
chr7112099103112099194+intron-Distal,intron-Proximal3.5967210.03905K562TIA1
chr7112101014112101118+intron-Distal3.6909311.56901K562KHSRP
chr7112103900112103947+intron-Distal3.472205.57675K562HNRNPL
chr7112105513112105575+intron-Distal3.595057.42482K562KHSRP
chr7112112918112112963+intron-Proximal4.653074.65563K562AQR
chr7112108198112108259+intron-Proximal3.761874.23459K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for IFRD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for IFRD1 is not available on ENCORE database.

  • 118 RBPs can affect the levels of IFRD1.  








The Knockdown/knockout RNA-Seq assay for IFRD1 is not available on ENCORE database.





118 RBPs can affect the gene expression of IFRD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
IFRD1ENSG00000006652.9651.06630423.674900.619705.154103.73050HepG2AATF
IFRD1ENSG00000006652.91100.51040695.714400.6615012.7099011.60780HepG2ACO1
IFRD1ENSG00000006652.9832.701601106.25340-0.409801.956201.50000HepG2AKAP1
IFRD1ENSG00000006652.92158.26070708.273101.6074046.2327044.35870HepG2BOP1
IFRD1ENSG00000006652.9492.01550650.24460-0.402302.351001.71030HepG2CPSF6
IFRD1ENSG00000006652.91028.42690686.413600.583204.570603.17550HepG2CPSF7
IFRD1ENSG00000006652.91307.29690645.483801.0180024.2137021.58670HepG2YBX3
IFRD1ENSG00000006652.9603.05790409.360400.558804.262002.95740HepG2CSTF2
IFRD1ENSG00000006652.91256.96130814.752000.6254010.730609.62650HepG2CELF1
IFRD1ENSG00000006652.9723.29920457.494700.660706.684805.27050HepG2DDX24
IFRD1ENSG00000006652.9855.58880609.672400.488802.997001.65770HepG2DDX27
IFRD1ENSG00000006652.91391.070901059.809400.392302.796602.16770HepG2DDX3X
IFRD1ENSG00000006652.91065.50930738.396800.529002.516001.58470HepG2DDX59
IFRD1ENSG00000006652.92916.51890910.157401.6800037.3446035.46090HepG2DDX6
IFRD1ENSG00000006652.9826.07860633.825200.382103.548602.75880HepG2DNAJC21
IFRD1ENSG00000006652.9719.33720430.544300.740405.494003.94000HepG2AGO1
IFRD1ENSG00000006652.91179.69340632.200400.8999010.849808.74580HepG2EIF2S2
IFRD1ENSG00000006652.9889.47310441.598101.0101016.0503013.90140HepG2EIF3G
IFRD1ENSG00000006652.9956.42450663.964400.526404.399202.12510HepG2EIF3H
IFRD1ENSG00000006652.92026.78680941.590701.1059013.2294011.79140HepG2EIF4B
IFRD1ENSG00000006652.91634.78360864.285800.9194025.1961023.22160HepG2EIF4G1
IFRD1ENSG00000006652.93596.577901297.133301.4712085.3200082.89180HepG2ETF1
IFRD1ENSG00000006652.91026.95070679.813700.595105.148104.01240HepG2EWSR1
IFRD1ENSG00000006652.9781.50160538.257900.537903.035301.86510HepG2FUS
IFRD1ENSG00000006652.9721.03160960.76560-0.414102.190901.40340HepG2G3BP2
IFRD1ENSG00000006652.9751.67620507.283500.567203.061201.39920HepG2GTF2F1
IFRD1ENSG00000006652.91041.13880664.192000.6484011.487009.69660HepG2HDGF
IFRD1ENSG00000006652.9799.65720515.983600.632003.262001.74490HepG2HLTF
IFRD1ENSG00000006652.91903.377001347.430900.498303.228501.75190HepG2HNRNPA0
IFRD1ENSG00000006652.9511.55890639.89730-0.322901.914401.36560HepG2HNRNPA1
IFRD1ENSG00000006652.91269.40860916.186600.470303.469202.69160HepG2HNRNPK
IFRD1ENSG00000006652.9972.32710798.026100.284902.929502.23770HepG2HNRNPL
IFRD1ENSG00000006652.9516.84350703.45760-0.444702.774002.14360HepG2HNRNPLL
IFRD1ENSG00000006652.9586.89980707.05790-0.268702.003801.47770HepG2HNRNPU
IFRD1ENSG00000006652.91569.30930920.200900.770005.573904.64720HepG2IGF2BP2
IFRD1ENSG00000006652.91432.267701006.468000.508903.564802.62150HepG2LARP4
IFRD1ENSG00000006652.92558.306901456.508900.812605.851704.52820HepG2PABPC1
IFRD1ENSG00000006652.9846.69690509.532400.732605.036103.66880HepG2PCBP2
IFRD1ENSG00000006652.91108.53200535.638001.049209.594407.47550HepG2PRPF6
IFRD1ENSG00000006652.9690.58990855.89290-0.309602.739802.19440HepG2PTBP1
IFRD1ENSG00000006652.91043.38630829.250000.331302.446901.88140HepG2PUF60
IFRD1ENSG00000006652.91365.96180880.284300.6338014.9839013.83080HepG2PUM1
IFRD1ENSG00000006652.91804.37020879.642001.0364025.2890023.38650HepG2PUM2
IFRD1ENSG00000006652.91140.04160927.026800.298302.366001.78050HepG2QKI
IFRD1ENSG00000006652.93459.03950491.688302.8145053.3481050.75240HepG2RAVER1
IFRD1ENSG00000006652.91228.51390803.986800.611608.499807.10540HepG2RBM15
IFRD1ENSG00000006652.91468.189101084.161700.437405.718905.04200HepG2RBM22
IFRD1ENSG00000006652.91907.57620964.298700.9841019.1186017.64590HepG2RPLP0
IFRD1ENSG00000006652.9776.66730483.028500.685104.286803.11660HepG2RPS10
IFRD1ENSG00000006652.9728.35240449.907600.694907.197106.26010HepG2RPS19
IFRD1ENSG00000006652.91210.043501600.09950-0.403102.309201.57630HepG2RPS3A
IFRD1ENSG00000006652.9881.57810497.233300.826107.751106.51850HepG2RRP9
IFRD1ENSG00000006652.9504.57790629.66880-0.319502.577301.95150HepG2SAFB2
IFRD1ENSG00000006652.91054.144601520.09520-0.528102.949501.34210HepG2SBDS
IFRD1ENSG00000006652.9299.64580451.48700-0.591403.911902.79480HepG2SERBP1
IFRD1ENSG00000006652.91258.74730686.662600.874206.874205.77810HepG2SF3A3
IFRD1ENSG00000006652.9917.10460696.301900.397302.908502.18460HepG2SF3B1
IFRD1ENSG00000006652.9773.78840501.455400.625704.133102.94500HepG2SMNDC1
IFRD1ENSG00000006652.91367.56460774.751600.819706.422005.22110HepG2SNRNP70
IFRD1ENSG00000006652.93393.516701224.517801.4705094.0517092.19020HepG2SRFBP1
IFRD1ENSG00000006652.91614.79130749.172501.107904.740303.39700HepG2SRSF3
IFRD1ENSG00000006652.91212.41960818.762200.566309.298108.24150HepG2SRSF5
IFRD1ENSG00000006652.91787.85340756.704501.2403015.4352014.31970HepG2SRSF9
IFRD1ENSG00000006652.9893.41500459.500600.959207.609605.68040HepG2SUB1
IFRD1ENSG00000006652.91134.41640931.159400.284803.079502.43010HepG2SUCLG1
IFRD1ENSG00000006652.91243.48820648.646500.9388010.689609.50340HepG2SUPV3L1
IFRD1ENSG00000006652.91599.34280835.984600.9358022.6206021.23680HepG2TAF15
IFRD1ENSG00000006652.9738.975001245.80360-0.753503.462802.27400HepG2TBRG4
IFRD1ENSG00000006652.9970.00830768.230400.336402.550501.74540HepG2TIA1
IFRD1ENSG00000006652.9838.21170687.054200.286802.057801.61340HepG2TIAL1
IFRD1ENSG00000006652.91209.44900810.140300.578006.979905.48740HepG2TUFM
IFRD1ENSG00000006652.9923.41760719.793200.359301.893601.36300HepG2U2AF1
IFRD1ENSG00000006652.91129.85900857.519500.397802.319201.55800HepG2UBE2L3
IFRD1ENSG00000006652.9604.70760383.177800.658105.328504.26970HepG2UCHL5
IFRD1ENSG00000006652.9877.09870608.966400.526307.362706.31490HepG2UPF1
IFRD1ENSG00000006652.9467.50370625.92040-0.421003.581802.40670HepG2UTP18
IFRD1ENSG00000006652.91424.74190587.930701.2769043.4661041.50180HepG2UTP3
IFRD1ENSG00000006652.9828.21050483.541100.776305.371203.60290HepG2XRCC5
IFRD1ENSG00000006652.91100.19010540.748901.024609.994908.11780HepG2XRCC6
IFRD1ENSG00000006652.9476.56700638.52120-0.422102.304601.63730HepG2XRN2
IFRD1ENSG00000006652.91122.37440669.744200.7448017.3719016.29480HepG2ZNF622
IFRD1ENSG00000006652.9762.84110491.278200.634704.258802.62310HepG2ZRANB2
IFRD1ENSG00000006652.91946.145301149.465000.7596012.313609.88990K562AARS
IFRD1ENSG00000006652.91803.898202545.86950-0.497005.517103.78110K562ABCF1
IFRD1ENSG00000006652.92382.934402861.65190-0.264103.501402.87570K562AGGF1
IFRD1ENSG00000006652.92422.309702977.69780-0.297802.501501.88000K562AKAP8L
IFRD1ENSG00000006652.91364.097801586.72650-0.218102.210001.34980K562BCLAF1
IFRD1ENSG00000006652.91748.436002271.02640-0.377305.547003.93470K562CPEB4
IFRD1ENSG00000006652.91049.473401379.16990-0.394103.928302.99450K562CPSF6
IFRD1ENSG00000006652.91746.513901391.264600.328004.253702.59470K562DDX27
IFRD1ENSG00000006652.9942.968801441.03380-0.611808.360106.46830K562DDX3X
IFRD1ENSG00000006652.93761.127802349.975800.6784021.4733019.82190K562DDX47
IFRD1ENSG00000006652.9865.356201376.63440-0.669805.412503.59000K562EEF2
IFRD1ENSG00000006652.9964.941701330.23240-0.463203.819602.73520K562EFTUD2
IFRD1ENSG00000006652.91153.52930810.350700.509302.441401.50140K562EIF3A
IFRD1ENSG00000006652.9895.758401424.50060-0.669305.926704.32870K562EIF3D
IFRD1ENSG00000006652.91996.704601289.922200.630208.252806.88330K562EIF3G
IFRD1ENSG00000006652.92774.379203287.14030-0.244702.260401.40750K562EIF4G2
IFRD1ENSG00000006652.91451.753101830.16630-0.334202.712101.87210K562FIP1L1
IFRD1ENSG00000006652.9929.353101189.40480-0.355902.337001.50190K562FTO
IFRD1ENSG00000006652.91870.818601565.733400.256702.742102.13890K562FXR1
IFRD1ENSG00000006652.92513.317401513.481300.731607.131005.88230K562G3BP2
IFRD1ENSG00000006652.9903.596001316.76630-0.543205.967204.80280K562GPKOW
IFRD1ENSG00000006652.91740.186701257.742900.468305.445704.63600K562HNRNPC
IFRD1ENSG00000006652.9874.841001123.16720-0.360502.899401.73000K562HNRNPF
IFRD1ENSG00000006652.92213.815501855.148800.254902.668501.79150K562HNRNPU
IFRD1ENSG00000006652.91782.142101217.965600.549006.598504.32510K562LARP7
IFRD1ENSG00000006652.92209.727801796.235300.298802.668501.84390K562MAGOH
IFRD1ENSG00000006652.91039.121201285.31150-0.306802.328401.52770K562METAP2
IFRD1ENSG00000006652.91464.870001763.75520-0.267904.143703.25010K562NSUN2
IFRD1ENSG00000006652.92207.124401755.590100.330103.448501.93500K562PCBP1
IFRD1ENSG00000006652.9911.080801116.47270-0.293302.047801.35910K562POLR2G
IFRD1ENSG00000006652.94609.317703814.273500.273002.915801.81750K562PUM1
IFRD1ENSG00000006652.93571.003402952.921200.274101.962401.49020K562PUS1
IFRD1ENSG00000006652.92269.692501444.226500.652104.338502.50000K562RAVER1
IFRD1ENSG00000006652.91756.047001318.719800.413103.230602.34760K562RPS19
IFRD1ENSG00000006652.91306.60960994.620600.393503.207802.04160K562SAFB
IFRD1ENSG00000006652.91324.863901028.404100.365302.878901.40220K562SDAD1
IFRD1ENSG00000006652.91343.464101740.28290-0.373404.860103.80480K562SF3A3
IFRD1ENSG00000006652.9970.537101252.29700-0.367702.266801.39670K562SF3B1
IFRD1ENSG00000006652.91605.302401184.485600.438504.475802.33500K562SND1
IFRD1ENSG00000006652.92234.461601710.745400.385204.419503.53020K562SRSF1
IFRD1ENSG00000006652.91031.731301319.90570-0.355402.448801.46750K562SRSF4
IFRD1ENSG00000006652.91786.742701330.562900.425203.382301.94670K562SSB
IFRD1ENSG00000006652.91525.121501119.770400.445605.383404.23110K562SYNCRIP
IFRD1ENSG00000006652.91239.002401731.50120-0.482804.728203.79590K562TARDBP
IFRD1ENSG00000006652.9912.800601152.30980-0.336202.522001.62530K562TRIM56
IFRD1ENSG00000006652.91147.182001870.14210-0.7051018.3711016.69660K562UPF1
IFRD1ENSG00000006652.92203.589101663.997400.405107.939606.57570K562WDR43
IFRD1ENSG00000006652.92794.670203406.10510-0.285402.115301.37060K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for IFRD1 is not available on ENCORE database.





2 RBPs can affect the splicing of IFRD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEIFRD1ENSG00000006652.9chr7+112102324112102433112102055112102234112108035112108170-0.055000.000000.00001excludedK562AQR
SEIFRD1ENSG00000006652.9chr7+112098882112099073112096858112097093112101920112101971-0.088000.000010.00025excludedK562AQR
SEIFRD1ENSG00000006652.9chr7+1121058061121058931121023241121024331121080351121081700.058000.002520.05258includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for IFRD1 is not avaliable on ENCORE database.