CCDC88C

General Information

Gene Name       : CCDC88C
Gene ID             : ENSG00000015133.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC88C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC88CENSG00000015133.1812.7221.3217.02ENCSR000AEF
HepG2CCDC88CENSG00000015133.187.884.486.18ENCSR985KAT
K562CCDC88CENSG00000015133.186.715.626.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC88C is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC88C RNA is bound by 9 proteins.  







eCLIP assay for CCDC88C is not avaliable on ENCORE database.





9 proteins are bound to CCDC88C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149188403291884111-5'-UTR,CDS,intron-Distal,intron-Proximal4.747975.35746HepG2DDX3X
chr149188411191884173-5'-UTR,intron-Distal,intron-Proximal4.058713.32488HepG2DDX3X
chr149179114791791249-CDS,intron-Distal3.790755.37538K562ZNF622
chr149180560491805623-CDS,intron-Distal,intron-Proximal4.577074.13847K562AQR
chr149177221691772267-CDS,intron-Distal3.857873.11168K562ZNF622
chr149176629891766405-CDS,intron-Distal4.934836.23323K562UCHL5
chr149180487691804927-CDS,intron-Distal,intron-Proximal4.047453.83824K562BUD13
chr149177961391779657-CDS,intron-Distal3.831783.01428K562UCHL5
chr149178023391780320-CDS,intron-Distal,intron-Proximal3.584683.86355HepG2PPIG
chr149178022391780304-CDS,intron-Distal,intron-Proximal4.152694.67436K562GRWD1
chr149177992891780047-CDS,intron-Distal3.790755.37538K562ZNF622
chr149180569291805807-CDS,intron-Distal,intron-Proximal3.842093.34184HepG2GRWD1
chr149178020091780304-CDS,intron-Distal,intron-Proximal4.159456.11943K562UCHL5
chr149186371991863847-intron-Distal5.484467.55693K562EIF4G2
chr149175935191759431-intron-Distal4.699875.44892HepG2FAM120A
chr149175979791759860-intron-Distal4.519927.13447HepG2FAM120A
chr149180618591806228-intron-Distal,intron-Proximal5.015763.62536K562AQR
chr149180555791805604-intron-Distal,intron-Proximal4.221836.48405K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC88C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC88C is not available on ENCORE database.

  • 76 RBPs can affect the levels of CCDC88C.  








The Knockdown/knockout RNA-Seq assay for CCDC88C is not available on ENCORE database.





76 RBPs can affect the gene expression of CCDC88C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC88CENSG00000015133.14570.61100766.11990-0.425104.533403.69210HepG2AUH
CCDC88CENSG00000015133.14587.96450847.66450-0.527804.554003.80840HepG2BOP1
CCDC88CENSG00000015133.14310.22750214.045900.535301.968501.32870HepG2CNOT7
CCDC88CENSG00000015133.14447.71550612.98130-0.453303.128101.95300HepG2CPSF7
CCDC88CENSG00000015133.14532.68420363.135300.552703.340602.66150HepG2DDX3X
CCDC88CENSG00000015133.14364.98440508.33420-0.477903.859003.08450HepG2DKC1
CCDC88CENSG00000015133.14689.29420322.709501.094809.271308.05120HepG2EIF4B
CCDC88CENSG00000015133.14616.94680879.67000-0.511806.308905.46330HepG2ETF1
CCDC88CENSG00000015133.14182.49410293.53290-0.685703.423602.01690HepG2FKBP4
CCDC88CENSG00000015133.14524.16060334.471800.648004.382403.52600HepG2FXR1
CCDC88CENSG00000015133.14205.64540310.18600-0.593002.968802.28110HepG2G3BP1
CCDC88CENSG00000015133.14353.57180253.123500.482102.449401.61090HepG2GEMIN5
CCDC88CENSG00000015133.14317.88750198.148100.681803.161001.96550HepG2GRSF1
CCDC88CENSG00000015133.14352.84480507.24610-0.523705.089103.80480HepG2HDGF
CCDC88CENSG00000015133.14276.69740181.018200.612102.668101.32810HepG2HNRNPA0
CCDC88CENSG00000015133.14502.89820638.36610-0.344102.577401.88420HepG2HNRNPF
CCDC88CENSG00000015133.14523.06940841.82730-0.686506.344305.43580HepG2HNRNPLL
CCDC88CENSG00000015133.14461.34870628.61230-0.446303.229602.45180HepG2IGF2BP1
CCDC88CENSG00000015133.14397.45790314.290800.338602.147401.49280HepG2ILF2
CCDC88CENSG00000015133.14368.01700485.67920-0.400203.252002.14780HepG2KIF1C
CCDC88CENSG00000015133.14561.52690334.589300.746905.774504.83780HepG2MAGOH
CCDC88CENSG00000015133.14708.60630336.435501.0746010.767309.58150HepG2MATR3
CCDC88CENSG00000015133.14582.48270858.60190-0.559803.067302.04320HepG2MTPAP
CCDC88CENSG00000015133.14360.35730510.79130-0.503303.614802.22840HepG2NAA15
CCDC88CENSG00000015133.14683.67600344.338900.989409.863908.71100HepG2NCBP2
CCDC88CENSG00000015133.14535.76470334.251300.680607.271206.36300HepG2PCBP1
CCDC88CENSG00000015133.14360.42470274.431100.393202.285501.60860HepG2PPIL4
CCDC88CENSG00000015133.14576.44890340.095400.761208.667407.80890HepG2PTBP1
CCDC88CENSG00000015133.14717.68440377.016900.9286017.3511016.12930HepG2PUM1
CCDC88CENSG00000015133.141240.09290735.228400.7541013.3213012.35430HepG2RBM22
CCDC88CENSG00000015133.14544.12300378.508300.523504.222503.57960HepG2NELFE
CCDC88CENSG00000015133.14469.82720352.502200.414402.722602.11030HepG2RECQL
CCDC88CENSG00000015133.14412.46960687.61770-0.737306.956805.94670HepG2RPLP0
CCDC88CENSG00000015133.14511.31390276.677700.885908.704607.68700HepG2RPS19
CCDC88CENSG00000015133.14473.73920307.543300.623203.554602.64980HepG2RPS2
CCDC88CENSG00000015133.14535.57050313.969500.770405.489303.96190HepG2RPS5
CCDC88CENSG00000015133.14406.30720274.006700.568304.774703.96780HepG2SAFB2
CCDC88CENSG00000015133.14520.74130354.115200.556204.695503.95610HepG2SF3B4
CCDC88CENSG00000015133.14448.56100340.521500.397502.710802.01490HepG2SLBP
CCDC88CENSG00000015133.14504.27350319.535700.658107.377206.40500HepG2SMN1
CCDC88CENSG00000015133.14516.59850309.892800.737204.898003.58840HepG2SMNDC1
CCDC88CENSG00000015133.14375.26020927.11920-1.3049012.7352011.07500HepG2SNRNP70
CCDC88CENSG00000015133.14530.09900369.606500.520204.178303.62650HepG2SRSF1
CCDC88CENSG00000015133.141221.56400896.594200.446102.757101.75790HepG2SRSF3
CCDC88CENSG00000015133.14627.42710350.663000.8393011.4712010.31690HepG2SRSF5
CCDC88CENSG00000015133.14449.43660627.16000-0.480704.562903.70230HepG2SRSF7
CCDC88CENSG00000015133.14227.52640300.68330-0.402202.242101.73430HepG2SRSF9
CCDC88CENSG00000015133.14436.97070720.93590-0.7223010.724009.84270HepG2SSB
CCDC88CENSG00000015133.14737.48260398.818700.8868014.8260013.57120HepG2SUCLG1
CCDC88CENSG00000015133.14178.38790351.05950-0.976705.434504.53670HepG2SUPV3L1
CCDC88CENSG00000015133.14258.91050332.18050-0.359501.815701.34300HepG2TAF15
CCDC88CENSG00000015133.14472.86810346.962500.446602.626801.77640HepG2TUFM
CCDC88CENSG00000015133.14555.02620677.59270-0.287902.201601.56720HepG2UPF1
CCDC88CENSG00000015133.14219.39530321.32610-0.550502.516401.56260HepG2UPF2
CCDC88CENSG00000015133.14790.34460654.188900.272702.160401.61750HepG2UTP3
CCDC88CENSG00000015133.14519.07670333.588200.637803.644702.42620HepG2XRCC6
CCDC88CENSG00000015133.14232.93320492.23760-1.0794015.9666014.57130HepG2ZC3H8
CCDC88CENSG00000015133.14520.72670745.22210-0.517106.884006.12210HepG2ZNF622
CCDC88CENSG00000015133.14587.34840740.03940-0.333401.892801.39010K562AQR
CCDC88CENSG00000015133.14372.85120528.48470-0.503303.111202.18430K562BOP1
CCDC88CENSG00000015133.14900.348401362.86340-0.598108.556706.88140K562CELF1
CCDC88CENSG00000015133.14800.70480476.733400.748009.113207.10040K562DDX3X
CCDC88CENSG00000015133.141634.903001019.294000.6815014.9916013.59070K562DDX47
CCDC88CENSG00000015133.14647.97780385.317700.749804.377303.08570K562EIF3A
CCDC88CENSG00000015133.14770.42860498.032600.629302.588201.79440K562EIF4A3
CCDC88CENSG00000015133.14674.86480519.403100.377602.713301.46170K562EXOSC5
CCDC88CENSG00000015133.14454.87220631.77680-0.474003.402302.45430K562FIP1L1
CCDC88CENSG00000015133.14232.77660349.79180-0.587602.743301.51470K562HNRNPK
CCDC88CENSG00000015133.14775.61560368.163701.0749015.1760013.09530K562MAGOH
CCDC88CENSG00000015133.14842.970101181.36150-0.486904.642603.17590K562MSI2
CCDC88CENSG00000015133.14498.09750717.19050-0.525904.183803.14680K562PPIG
CCDC88CENSG00000015133.141030.854701286.32150-0.319402.767101.69910K562PUM1
CCDC88CENSG00000015133.14545.41580366.664900.572803.298202.40420K562RPS19
CCDC88CENSG00000015133.14492.95460327.604200.589403.477002.34410K562RPS3
CCDC88CENSG00000015133.14623.75620451.515100.466103.408002.20300K562SAFB
CCDC88CENSG00000015133.14747.01590955.46960-0.355103.412102.51180K562SF3A3
CCDC88CENSG00000015133.14455.62530350.716300.377402.110401.48280K562SRSF1
CCDC88CENSG00000015133.14444.08590316.176100.490002.834701.76710K562SRSF4
CCDC88CENSG00000015133.14659.69610508.293400.376002.743001.92740K562SYNCRIP
CCDC88CENSG00000015133.14463.30160336.108100.462902.268801.30150K562TRA2A
CCDC88CENSG00000015133.14266.14860368.87010-0.470902.374001.43750K562UCHL5
CCDC88CENSG00000015133.141146.42210913.542700.327504.009103.00340K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC88C is not available on ENCORE database.





4 RBPs can affect the splicing of CCDC88C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC88CENSG00000015133.14chr14-9175173891752180917496729174986191755448917556750.292000.000010.00052includedHepG2U2AF1
SECCDC88CENSG00000015133.14chr14-917517389175218091749672917498619175544891755675-0.358000.003200.07531excludedK562AKAP8L
SECCDC88CENSG00000015133.14chr14-917517389175218091749672917498619175544891755675-0.321000.000180.05185excludedK562WDR43
SECCDC88CENSG00000015133.14chr14-9174750591747652917455819174565091747800917478690.211000.002860.04486includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC88C is not avaliable on ENCORE database.