SLC38A9

General Information

Gene Name       : SLC38A9
Gene ID             : ENSG00000177058.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC38A9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC38A9ENSG00000177058.1127.8718.2223.05ENCSR000AEF
HepG2SLC38A9ENSG00000177058.1114.5219.1316.82ENCSR985KAT
K562SLC38A9ENSG00000177058.1115.7113.9214.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC38A9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC38A9 RNA is bound by 6 proteins.  







eCLIP assay for SLC38A9 is not avaliable on ENCORE database.





6 proteins are bound to SLC38A9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr55494849354948562-3'-UTR,CDS,intron-Distal,intron-Proximal3.783823.68471HepG2BCLAF1
chr55495254254952595-3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site4.300623.02457HepG2BCLAF1
chr55499370754993813-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.113903.55800HepG2BCLAF1
chr55496504254965150-5'-UTR,CDS,intron-Distal,intron-Proximal3.930564.51739HepG2BCLAF1
chr55497870354978829-intron-Distal3.976605.36899HepG2PTBP1
chr55499560954995752-intron-Distal4.898605.07733HepG2PTBP1
chr55497872454978827-intron-Distal4.865514.90095K562PTBP1
chr55498098554981051-intron-Distal3.605533.01412K562SAFB2
chr55497376854973845-intron-Distal3.774003.27714HepG2HNRNPL
chr55499098754991095-intron-Distal3.791283.88068HepG2CSTF2
chr55499562954995693-intron-Distal4.648563.91475K562PTBP1
chr55497365654973881-intron-Distal4.163873.80954K562HNRNPL
chr55497876254978870-intron-Distal4.721425.77028HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC38A9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC38A9 is not available on ENCORE database.

  • 50 RBPs can affect the levels of SLC38A9.  








The Knockdown/knockout RNA-Seq assay for SLC38A9 is not available on ENCORE database.





50 RBPs can affect the gene expression of SLC38A9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC38A9ENSG00000177058.7534.79620397.078200.429502.317501.45210HepG2ABCF1
SLC38A9ENSG00000177058.7484.70090360.677100.426302.454201.88700HepG2BOP1
SLC38A9ENSG00000177058.7565.09740387.476000.544302.887902.09780HepG2CIRBP
SLC38A9ENSG00000177058.7219.65320327.06300-0.574303.078801.91320HepG2CPSF7
SLC38A9ENSG00000177058.7360.88510468.06470-0.375202.161601.58230HepG2CELF1
SLC38A9ENSG00000177058.7565.96760322.443400.811607.717106.64160HepG2DDX21
SLC38A9ENSG00000177058.7470.80340315.392200.577904.112302.98840HepG2DDX24
SLC38A9ENSG00000177058.7866.22780472.211700.875205.847404.97010HepG2DDX3X
SLC38A9ENSG00000177058.7476.21100359.361900.406102.856002.16830HepG2DKC1
SLC38A9ENSG00000177058.7277.34860355.13910-0.356702.249701.64900HepG2DNAJC2
SLC38A9ENSG00000177058.7410.02910277.276700.564303.028302.06480HepG2EEF2
SLC38A9ENSG00000177058.7321.56860225.091500.514502.253701.42990HepG2EIF3D
SLC38A9ENSG00000177058.7659.52590431.023300.613604.300803.50770HepG2EIF4A3
SLC38A9ENSG00000177058.7338.32430475.63640-0.491503.011802.16330HepG2EIF4G2
SLC38A9ENSG00000177058.7733.95480599.759300.291202.501601.92580HepG2ETF1
SLC38A9ENSG00000177058.7381.03150475.48210-0.319502.029801.40870HepG2HNRNPF
SLC38A9ENSG00000177058.7324.99010458.45830-0.496404.259003.43570HepG2HNRNPL
SLC38A9ENSG00000177058.7276.04650399.73450-0.534104.166103.43460HepG2HNRNPU
SLC38A9ENSG00000177058.7635.49070384.609100.724402.225601.35180HepG2IGF2BP3
SLC38A9ENSG00000177058.7608.60980434.805400.485002.692502.04510HepG2MAGOH
SLC38A9ENSG00000177058.7595.14670447.607000.410902.041901.49360HepG2NCBP2
SLC38A9ENSG00000177058.7268.70560356.53340-0.408002.401601.71080HepG2PPIL4
SLC38A9ENSG00000177058.7297.59660476.39480-0.678805.420904.62180HepG2PUF60
SLC38A9ENSG00000177058.7973.42410501.295200.9573018.1061017.01390HepG2RBM22
SLC38A9ENSG00000177058.7337.47400444.76240-0.398302.250901.63750HepG2RBM25
SLC38A9ENSG00000177058.7331.75210219.020300.598903.579902.88990HepG2RPS19
SLC38A9ENSG00000177058.7784.54560566.207500.470405.600704.95720HepG2SRFBP1
SLC38A9ENSG00000177058.7316.80900467.14690-0.560304.864903.98250HepG2SRSF7
SLC38A9ENSG00000177058.7569.73270349.133400.706405.981904.97260HepG2TARDBP
SLC38A9ENSG00000177058.7302.89910388.46380-0.358901.956001.52030HepG2TIAL1
SLC38A9ENSG00000177058.7207.34480391.88590-0.9184010.351109.36490HepG2TRIM56
SLC38A9ENSG00000177058.7497.69240315.053800.659607.165906.16720HepG2ZC3H8
SLC38A9ENSG00000177058.7254.08610385.78040-0.602504.564403.86750K562AGGF1
SLC38A9ENSG00000177058.7275.39700401.41450-0.543603.427502.69900K562AKAP8L
SLC38A9ENSG00000177058.7211.08990287.31580-0.444802.355901.47230K562BCLAF1
SLC38A9ENSG00000177058.7685.89980398.411300.7836011.2376010.02110K562DDX47
SLC38A9ENSG00000177058.7125.10630251.14340-1.005404.911203.67950K562EFTUD2
SLC38A9ENSG00000177058.7144.81400268.97980-0.893303.703302.48960K562EIF3D
SLC38A9ENSG00000177058.7361.41750219.788700.717405.626104.80640K562FXR1
SLC38A9ENSG00000177058.7354.89010229.491700.628803.150302.38740K562G3BP2
SLC38A9ENSG00000177058.7365.85340476.33270-0.380701.991101.34420K562GRSF1
SLC38A9ENSG00000177058.7213.52940311.23840-0.543603.346902.36630K562HNRNPU
SLC38A9ENSG00000177058.7217.11110320.53420-0.562002.608501.62210K562IGF2BP2
SLC38A9ENSG00000177058.7328.56010426.02750-0.374802.284001.54310K562KIF1C
SLC38A9ENSG00000177058.7151.27580277.50550-0.875303.097802.03710K562PABPN1
SLC38A9ENSG00000177058.7234.13720398.14690-0.765905.740704.99300K562PUS1
SLC38A9ENSG00000177058.7228.81930387.88950-0.761406.341905.47020K562RBM15
SLC38A9ENSG00000177058.7369.97390248.997100.571203.036602.18020K562RPS19
SLC38A9ENSG00000177058.7311.69710198.404900.651603.805702.52720K562SAFB
SLC38A9ENSG00000177058.7184.41120294.00090-0.672904.585803.05970K562SRSF7
SLC38A9ENSG00000177058.7145.55540236.72720-0.701702.610301.62490K562SUPV3L1
SLC38A9ENSG00000177058.7351.20700223.340800.653004.600003.53490K562SYNCRIP
SLC38A9ENSG00000177058.7217.93150307.43050-0.496402.422401.41440K562TRA2A
SLC38A9ENSG00000177058.7160.82240229.69210-0.514202.416501.66540K562U2AF2
SLC38A9ENSG00000177058.7385.94060504.30850-0.385902.359001.57180K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC38A9 is not available on ENCORE database.





11 RBPs can affect the splicing of SLC38A9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC38A9ENSG00000177058.7chr5-549237185492380854921685549224875492958154929730-0.457000.000060.00201excludedK562SRSF1
SESLC38A9ENSG00000177058.7chr5-550072795500732754993673549938205500804455008161-0.333000.000000.00000excludedK562AQR
SESLC38A9ENSG00000177058.7chr5-550072795500732754993673549938205500804455008130-0.184000.004160.05411excludedK562PUS1
SESLC38A9ENSG00000177058.7chr5-5500014955000262549936735499382055007279550073270.222000.002130.04157includedK562U2AF1
SESLC38A9ENSG00000177058.7chr5-549237185492380854921685549224875492958154929730-0.398000.000000.00001excludedHepG2SRSF1
SESLC38A9ENSG00000177058.7chr5-550001495500026254993673549938205500804455008130-0.558000.001530.08663excludedK562HNRNPUL1
SESLC38A9ENSG00000177058.7chr5-550072795500732754993673549938205500804455008130-0.229000.000490.01588excludedK562AGGF1
SESLC38A9ENSG00000177058.7chr5-549237185492380854921685549224875492958154929730-0.417000.000620.02766excludedK562SF3B1
RISLC38A9ENSG00000177058.7chr5-549295225493148554929522549296805493137154931485-0.276000.005610.09508excludedHepG2SRSF1
MXESLC38A9ENSG00000177058.7chr5-54968390549685235499367354993820549655855496570755007279550073270.360000.000480.097961includedHepG2CSTF2T
MXESLC38A9ENSG00000177058.7chr5-54968390549685235499367354993820549655855496570755007279550073270.211000.003950.029481includedK562AQR
MXESLC38A9ENSG00000177058.7chr5-54945034549451425494835654948551549416165494172354952542549526020.381000.001390.051801includedK562HNRNPU
MXESLC38A9ENSG00000177058.7chr5-54945034549451425494835654948551549416165494172354952542549526020.237000.000780.067691includedHepG2SSB
MXESLC38A9ENSG00000177058.7chr5-5496839054968523549936735499382054965585549657075500727955007327-0.263000.000780.030862includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC38A9 is not avaliable on ENCORE database.