GPC1

General Information

Gene Name       : GPC1
Gene ID             : ENSG00000063660.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GPC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GPC1ENSG00000063660.80.000.060.03ENCSR000AEF
HepG2GPC1ENSG00000063660.820.442.3011.37ENCSR985KAT
K562GPC1ENSG00000063660.80.270.100.18ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GPC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GPC1 RNA is bound by 5 proteins.  







eCLIP assay for GPC1 is not avaliable on ENCORE database.





5 proteins are bound to GPC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2241406863241406924+3'-UTR4.267534.68979HepG2UPF1
chr2241406820241406902+3'-UTR4.534065.71320HepG2AKAP1
chr2241406083241406163+3'-UTR4.585605.71320HepG2AKAP1
chr2241405780241405838+3'-UTR,intron-Proximal4.095203.19668HepG2UPF1
chr2241406076241406151+3'-UTR5.2641410.50616HepG2UPF1
chr2241375297241375416+5'-UTR,CDS4.2012811.21395HepG2DDX3X
chr2241375185241375270+5'-UTR3.533348.31119HepG2DDX3X
chr2241402806241402865+CDS4.283663.77218HepG2SND1
chr2241393981241394042+intron-Distal3.125273.27222HepG2CSTF2T
chr2241393732241393780+intron-Distal3.760603.19526HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GPC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GPC1 is not available on ENCORE database.

  • 96 RBPs can affect the levels of GPC1.  








The Knockdown/knockout RNA-Seq assay for GPC1 is not available on ENCORE database.





96 RBPs can affect the gene expression of GPC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GPC1ENSG00000063660.4403.06360112.091501.8462016.2136015.03540HepG2AKAP1
GPC1ENSG00000063660.4167.6030098.605800.765202.924901.85900HepG2AKAP8
GPC1ENSG00000063660.4572.69830238.457201.2639022.0445020.18590HepG2AKAP8L
GPC1ENSG00000063660.4141.10560285.23160-1.015407.105404.98150HepG2ATP5C1
GPC1ENSG00000063660.4230.74180346.24420-0.585504.303203.48140HepG2AUH
GPC1ENSG00000063660.4604.42780190.284601.667305.692004.32870HepG2BCCIP
GPC1ENSG00000063660.4738.36900344.345701.1004014.9457013.70950HepG2BOP1
GPC1ENSG00000063660.4186.9192088.112901.084905.387804.32800HepG2CIRBP
GPC1ENSG00000063660.4391.96870237.286100.724005.565704.68250HepG2CKAP4
GPC1ENSG00000063660.418.0950060.54420-1.742402.068501.41200HepG2CNOT7
GPC1ENSG00000063660.4219.49210117.446800.902103.731502.50070HepG2CSTF2
GPC1ENSG00000063660.442.42530123.66200-1.543403.944802.21680HepG2CSTF2T
GPC1ENSG00000063660.4304.25170132.841801.195509.948308.74850HepG2DDX21
GPC1ENSG00000063660.4862.81720107.366703.0064052.6381050.24050HepG2DDX3X
GPC1ENSG00000063660.4261.79050139.187400.911305.861603.97370HepG2DDX52
GPC1ENSG00000063660.4914.8795092.250203.309907.720506.73650HepG2DDX6
GPC1ENSG00000063660.4221.15620111.047900.993804.292203.43310HepG2DNAJC21
GPC1ENSG00000063660.4225.81350110.079101.036508.355407.29880HepG2DNAJC2
GPC1ENSG00000063660.4409.62640166.029601.3028011.268609.57760HepG2EEF2
GPC1ENSG00000063660.4196.3354088.662501.146806.008505.15260HepG2EIF2S1
GPC1ENSG00000063660.4373.92290239.782100.640904.318202.86700HepG2EIF2S2
GPC1ENSG00000063660.4304.8764095.408701.675903.404702.64450HepG2EIF4B
GPC1ENSG00000063660.480.49410189.25330-1.233407.975706.69300HepG2EIF4G1
GPC1ENSG00000063660.4158.54710273.81910-0.788304.593303.22180HepG2ESF1
GPC1ENSG00000063660.4629.90010397.550700.663907.169406.27730HepG2ETF1
GPC1ENSG00000063660.436.43500126.71650-1.798205.298803.79230HepG2FASTKD2
GPC1ENSG00000063660.4626.77920319.191300.973408.317207.06380HepG2FIP1L1
GPC1ENSG00000063660.453.93140155.71120-1.529702.594701.36170HepG2FKBP4
GPC1ENSG00000063660.4528.6595098.879602.4185037.5450035.37350HepG2FXR1
GPC1ENSG00000063660.4329.7066091.710101.8459018.6675017.01450HepG2G3BP1
GPC1ENSG00000063660.4173.9983097.382000.837203.433702.43470HepG2G3BP2
GPC1ENSG00000063660.4373.72650119.977301.639103.873302.79910HepG2GEMIN5
GPC1ENSG00000063660.4277.75360100.372601.4683010.497708.48230HepG2GNB2L1
GPC1ENSG00000063660.4139.4238056.070101.314105.046803.53810HepG2GRSF1
GPC1ENSG00000063660.4268.38160112.111901.259202.917902.25540HepG2HNRNPA1
GPC1ENSG00000063660.4120.17490176.30550-0.552902.369001.49580HepG2HNRNPA2B1
GPC1ENSG00000063660.4215.21440358.00170-0.734206.223705.20610HepG2HNRNPF
GPC1ENSG00000063660.4332.1040092.900401.8378018.3906016.74040HepG2HNRNPK
GPC1ENSG00000063660.4247.29040123.882900.997103.967403.25240HepG2HNRNPU
GPC1ENSG00000063660.4374.46030107.316201.8028010.150707.89780HepG2HSPD1
GPC1ENSG00000063660.4253.53760352.53070-0.475502.604701.90240HepG2IGF2BP1
GPC1ENSG00000063660.4657.8573093.215802.8190054.4639051.95610HepG2IGF2BP2
GPC1ENSG00000063660.4226.6512087.501001.373003.137402.08700HepG2IGF2BP3
GPC1ENSG00000063660.4194.9564057.817501.7535011.774909.19200HepG2KHDRBS1
GPC1ENSG00000063660.4286.0490098.389801.5396012.7949010.50160HepG2LARP7
GPC1ENSG00000063660.4264.34040103.232001.356408.782606.72500HepG2LIN28B
GPC1ENSG00000063660.4355.8628098.914301.8470019.1300017.48940HepG2MAGOH
GPC1ENSG00000063660.4781.8248099.463202.974505.972205.07100HepG2MATR3
GPC1ENSG00000063660.4533.61080101.802202.3899035.5428033.47540HepG2NCBP2
GPC1ENSG00000063660.4416.15730190.237501.1292012.9776011.38250HepG2NOL12
GPC1ENSG00000063660.4581.48950171.993101.757308.104206.19920HepG2NONO
GPC1ENSG00000063660.4160.62920303.23880-0.916705.651004.60190HepG2NSUN2
GPC1ENSG00000063660.4128.7683055.377301.217302.984402.06140HepG2PABPC1
GPC1ENSG00000063660.4191.88260126.154700.604902.867602.25320HepG2PCBP1
GPC1ENSG00000063660.4286.4843089.064101.685409.330207.55570HepG2PCBP2
GPC1ENSG00000063660.4236.72800110.493001.099208.672207.41560HepG2PPIL4
GPC1ENSG00000063660.426.34540197.28350-2.9046028.9679026.98790HepG2PRPF4
GPC1ENSG00000063660.4363.02760144.172101.332203.659002.74510HepG2PRPF8
GPC1ENSG00000063660.4486.99840128.374801.9235035.4538033.93970HepG2PTBP1
GPC1ENSG00000063660.4770.19030181.592202.0844045.7793043.74760HepG2PUF60
GPC1ENSG00000063660.4670.57500192.624601.799504.348203.51720HepG2PUM2
GPC1ENSG00000063660.4393.35360241.766500.702103.918203.21000HepG2PUS1
GPC1ENSG00000063660.430.67330139.01660-2.1802012.8406011.63770HepG2QKI
GPC1ENSG00000063660.4636.58460332.275500.937905.930505.24340HepG2RBM22
GPC1ENSG00000063660.4321.54960118.651601.4382010.846408.86020HepG2RBM27
GPC1ENSG00000063660.4171.6256058.516701.552208.126905.56050HepG2RBM47
GPC1ENSG00000063660.4263.5679096.351301.451703.770502.53080HepG2RCC2
GPC1ENSG00000063660.4400.83660142.862401.4883018.7672017.60180HepG2NELFE
GPC1ENSG00000063660.4312.53220133.068501.2317011.5613010.43200HepG2RECQL
GPC1ENSG00000063660.4871.30510131.146502.7319041.4295039.56250HepG2RPS19
GPC1ENSG00000063660.4361.23250109.411601.723104.619503.60050HepG2RPS2
GPC1ENSG00000063660.4170.3294060.917901.483307.778806.45690HepG2RPS3A
GPC1ENSG00000063660.4271.06270111.703401.278908.246906.39480HepG2RPS5
GPC1ENSG00000063660.452.76960110.32090-1.063904.251403.48270HepG2SAFB2
GPC1ENSG00000063660.4604.53080199.774001.597307.226406.10080HepG2SF3A3
GPC1ENSG00000063660.4564.38170133.640902.0782021.0849019.70510HepG2SF3B4
GPC1ENSG00000063660.4333.65650174.103800.938309.008507.85590HepG2SLBP
GPC1ENSG00000063660.4566.88220128.649002.1395051.8350049.72230HepG2SMN1
GPC1ENSG00000063660.480.13830376.65360-2.2327020.6734018.60680HepG2SNRNP70
GPC1ENSG00000063660.4374.86220139.497801.4260016.9119015.95280HepG2SRSF1
GPC1ENSG00000063660.4214.29750364.22780-0.765204.168302.91460HepG2SRSF3
GPC1ENSG00000063660.4669.09330179.287201.8998046.9079044.78930HepG2SRSF5
GPC1ENSG00000063660.4200.76760351.72050-0.808906.957105.93400HepG2SRSF7
GPC1ENSG00000063660.4220.70580106.978701.044705.711503.95560HepG2SSRP1
GPC1ENSG00000063660.4555.42130203.906301.4456026.8957025.28310HepG2SUCLG1
GPC1ENSG00000063660.4136.37230215.51790-0.660303.500002.45170HepG2SUPT6H
GPC1ENSG00000063660.4603.27500186.225801.6957010.297709.12970HepG2SUPV3L1
GPC1ENSG00000063660.41039.13490120.360803.1098014.3621013.37970HepG2TIAL1
GPC1ENSG00000063660.4317.24220121.452401.3851016.5256015.30130HepG2TRIM56
GPC1ENSG00000063660.4304.90850177.396100.781304.987203.77860HepG2TUFM
GPC1ENSG00000063660.4100.99760273.03720-1.4348010.545709.30010HepG2U2AF1
GPC1ENSG00000063660.4356.90190187.763200.926502.073701.35470HepG2UBE2L3
GPC1ENSG00000063660.4397.77180177.168201.166704.011503.19420HepG2UPF1
GPC1ENSG00000063660.4327.2164094.508301.791606.486604.91180HepG2XRCC6
GPC1ENSG00000063660.4312.78680194.852200.682702.564202.03220HepG2ZNF622
GPC1ENSG00000063660.418.823701.942003.276903.565802.61790K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GPC1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of GPC1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for GPC1 is not avaliable on ENCORE database.