SLC46A1

General Information

Gene Name       : SLC46A1
Gene ID             : ENSG00000076351.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC46A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC46A1ENSG00000076351.124.502.763.63ENCSR000AEF
HepG2SLC46A1ENSG00000076351.1214.8111.3813.10ENCSR985KAT
K562SLC46A1ENSG00000076351.122.853.012.93ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC46A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC46A1 RNA is bound by 7 proteins.  







eCLIP assay for SLC46A1 is not avaliable on ENCORE database.





7 proteins are bound to SLC46A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172672650526726551-3'-UTR,intron-Distal3.568174.17280HepG2AKAP1
chr172672597626726059-3'-UTR,intron-Distal5.0653515.57311HepG2AKAP1
chr172672583326725896-3'-UTR,intron-Distal5.2798510.29040HepG2AKAP1
chr172672607026726177-3'-UTR,intron-Distal5.5472321.71525HepG2AKAP1
chr172672569726725751-3'-UTR,intron-Distal3.506897.08232HepG2UPF1
chr172672520826725253-3'-UTR,intron-Distal4.610066.11802HepG2AKAP1
chr172672658126726635-3'-UTR,CDS,intron-Distal4.357464.38106HepG2PPIG
chr172672627726726414-3'-UTR,intron-Distal,intron-Proximal5.8229330.39305HepG2AKAP1
chr172672588526725982-3'-UTR,intron-Distal5.0667126.22024HepG2UPF1
chr172672522026725260-3'-UTR,intron-Distal4.141693.54010K562UPF1
chr172672644026726471-3'-UTR,intron-Distal4.197074.13758HepG2AKAP1
chr172672336926723479-3'-UTR,intron-Distal3.136643.11118HepG2PRPF4
chr172672283626722873-3'-UTR,intron-Distal4.199834.44583HepG2UPF1
chr172672506726725149-3'-UTR,intron-Distal4.2574413.41308HepG2UPF1
chr172672569926725791-3'-UTR,intron-Distal4.7408011.88181HepG2AKAP1
chr172672559526725688-3'-UTR,intron-Distal5.3876822.75019HepG2UPF1
chr172672657726726623-3'-UTR,CDS,intron-Distal3.915145.40760HepG2UPF1
chr172672589626725976-3'-UTR,intron-Distal4.2212513.53642HepG2AKAP1
chr172672628026726429-3'-UTR,intron-Distal,intron-Proximal5.6719653.42825HepG2UPF1
chr172672608226726222-3'-UTR,intron-Distal6.5828123.54094HepG2UPF1
chr172672651226726536-3'-UTR,intron-Distal4.894025.17229HepG2UPF1
chr172672507326725160-3'-UTR,intron-Distal3.722846.45914HepG2AKAP1
chr172673299626733030-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.216463.99162HepG2DDX3X
chr172672313926723193-3'-UTR,intron-Distal5.025337.69585HepG2LIN28B
chr172672560426725690-3'-UTR,intron-Distal5.0073715.50467HepG2AKAP1
chr172672598226726047-3'-UTR,intron-Distal6.2864420.82923HepG2UPF1
chr172673156426731654-CDS,intron-Distal,intron-Proximal3.820228.47339HepG2PRPF8
chr172673303026733114-CDS,intron-Distal,intron-Proximal4.5606313.85526HepG2DDX3X
chr172673272726732865-intron-Distal,intron-Proximal4.214703.26022HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC46A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC46A1 is not available on ENCORE database.

  • 124 RBPs can affect the levels of SLC46A1.  








The Knockdown/knockout RNA-Seq assay for SLC46A1 is not available on ENCORE database.





124 RBPs can affect the gene expression of SLC46A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC46A1ENSG00000076351.8533.99800900.04790-0.753208.777406.99450HepG2AATF
SLC46A1ENSG00000076351.82183.041801089.507201.0026015.3599013.45660HepG2ABCF1
SLC46A1ENSG00000076351.8371.667901038.11940-1.4819048.4970046.72880HepG2ACO1
SLC46A1ENSG00000076351.81220.81090738.395000.725308.568206.93410HepG2ADAR
SLC46A1ENSG00000076351.8709.989402208.63640-1.6373032.7578031.18890HepG2AKAP1
SLC46A1ENSG00000076351.81142.47150783.449300.544102.846201.93450HepG2BCLAF1
SLC46A1ENSG00000076351.81271.55300656.368600.9539015.0245013.78540HepG2BOP1
SLC46A1ENSG00000076351.81264.518501736.18340-0.457304.064803.13750HepG2CIRBP
SLC46A1ENSG00000076351.81507.219401037.863600.5382011.4724010.30620HepG2CKAP4
SLC46A1ENSG00000076351.8348.19600817.17720-1.2307010.923809.43940HepG2CNOT7
SLC46A1ENSG00000076351.81210.92160602.570801.0068015.0253013.58100HepG2CPSF6
SLC46A1ENSG00000076351.8669.31160921.49210-0.461302.612701.31260HepG2CSTF2T
SLC46A1ENSG00000076351.81735.334501246.060100.4777010.293809.00420HepG2DAZAP1
SLC46A1ENSG00000076351.81550.85370960.097800.6917018.2535016.54860HepG2DDX19B
SLC46A1ENSG00000076351.81829.18210993.148600.8810015.3403013.89370HepG2DDX21
SLC46A1ENSG00000076351.81627.50230971.770500.7439012.3684010.49880HepG2DDX24
SLC46A1ENSG00000076351.81269.08470829.490400.613403.760202.29010HepG2DDX27
SLC46A1ENSG00000076351.8486.53000886.70620-0.865906.828105.67780HepG2DDX55
SLC46A1ENSG00000076351.81747.45560916.184300.9314015.1925013.08830HepG2DDX5
SLC46A1ENSG00000076351.8588.780701817.59240-1.6262031.1146029.37650HepG2DDX6
SLC46A1ENSG00000076351.81036.45820717.131000.531305.296103.96880HepG2DHX30
SLC46A1ENSG00000076351.82137.18300993.191101.1055017.9534016.56830HepG2DKC1
SLC46A1ENSG00000076351.81253.81930841.290800.575605.453904.19740HepG2EEF2
SLC46A1ENSG00000076351.82454.575001747.050900.490504.651203.89370HepG2EIF2S1
SLC46A1ENSG00000076351.8612.57350826.36260-0.431903.857402.47980HepG2EIF2S2
SLC46A1ENSG00000076351.8461.44770682.97020-0.565703.716502.67760HepG2EIF3D
SLC46A1ENSG00000076351.81341.04830937.800600.515906.127904.61370HepG2EIF3G
SLC46A1ENSG00000076351.84025.367101930.578201.0600017.0277015.45070HepG2EIF4A3
SLC46A1ENSG00000076351.8812.500901879.91480-1.2102015.2040013.67040HepG2EIF4B
SLC46A1ENSG00000076351.81318.17000943.685100.482104.167502.84980HepG2ESF1
SLC46A1ENSG00000076351.82221.048001766.888500.329904.609503.86910HepG2ETF1
SLC46A1ENSG00000076351.81247.311301014.401300.298102.265701.51020HepG2EWSR1
SLC46A1ENSG00000076351.8601.605601100.10680-0.870808.981107.69520HepG2FIP1L1
SLC46A1ENSG00000076351.8738.944301173.05610-0.666708.517107.17740HepG2FUBP3
SLC46A1ENSG00000076351.8636.879201100.23880-0.788706.312604.67520HepG2FUS
SLC46A1ENSG00000076351.81063.162601948.23080-0.8738012.6044011.23390HepG2FXR1
SLC46A1ENSG00000076351.8842.56060608.105500.470403.462502.44710HepG2GEMIN5
SLC46A1ENSG00000076351.82880.53370683.029702.0762058.0886055.61170HepG2GPKOW
SLC46A1ENSG00000076351.82391.10750750.648301.6714053.3879051.31490HepG2HNRNPA1
SLC46A1ENSG00000076351.8784.389701145.19760-0.546008.039606.59580HepG2HNRNPA2B1
SLC46A1ENSG00000076351.81509.54760932.484300.694907.128606.04760HepG2HNRNPF
SLC46A1ENSG00000076351.8969.884401830.27350-0.9162014.9733013.47720HepG2HNRNPK
SLC46A1ENSG00000076351.8959.516901135.04480-0.242402.375201.74480HepG2HNRNPL
SLC46A1ENSG00000076351.81711.74460651.830601.3928028.7886027.11210HepG2HNRNPLL
SLC46A1ENSG00000076351.81861.03730918.230401.0191024.1860022.29620HepG2IGF2BP1
SLC46A1ENSG00000076351.81025.81550847.244400.275802.996202.23620HepG2ILF2
SLC46A1ENSG00000076351.81110.34570948.952500.226502.266001.34150HepG2KIF1C
SLC46A1ENSG00000076351.81923.610001080.293200.832308.808307.32150HepG2LARP4
SLC46A1ENSG00000076351.8614.00930844.29400-0.459503.765602.44170HepG2LARP7
SLC46A1ENSG00000076351.82464.729801948.912600.338702.493801.87030HepG2MAGOH
SLC46A1ENSG00000076351.81124.07940890.205200.336402.439101.67740HepG2MSI2
SLC46A1ENSG00000076351.81011.98650664.850800.606003.630802.50950HepG2MTPAP
SLC46A1ENSG00000076351.82383.713801786.147600.416303.410402.61390HepG2PABPC4
SLC46A1ENSG00000076351.8643.35050821.00000-0.351803.305802.38760HepG2PARN
SLC46A1ENSG00000076351.81239.064101966.94380-0.6667016.7461015.45820HepG2PCBP1
SLC46A1ENSG00000076351.81197.90150928.520300.367404.565603.59770HepG2PRPF4
SLC46A1ENSG00000076351.81109.94560683.662000.699006.074904.92920HepG2PRPF8
SLC46A1ENSG00000076351.81199.414002001.38190-0.7387018.8713017.68420HepG2PTBP1
SLC46A1ENSG00000076351.82993.566401179.501601.3436040.8274038.87050HepG2PUF60
SLC46A1ENSG00000076351.8986.737001252.11500-0.343604.708803.97780HepG2PUM1
SLC46A1ENSG00000076351.81546.445001251.186700.305602.936202.24520HepG2PUM2
SLC46A1ENSG00000076351.81422.320001057.387500.427606.926706.02850HepG2PUS1
SLC46A1ENSG00000076351.81188.950702167.66740-0.8665021.3322019.83490HepG2QKI
SLC46A1ENSG00000076351.8436.609801004.90510-1.202609.711408.44450HepG2RAVER1
SLC46A1ENSG00000076351.8659.798001112.59520-0.7538011.392109.83320HepG2RBM15
SLC46A1ENSG00000076351.81024.818801476.77240-0.527107.816407.04820HepG2RBM22
SLC46A1ENSG00000076351.81419.786201967.25160-0.470505.897604.94590HepG2RBM25
SLC46A1ENSG00000076351.81468.435802074.42820-0.4984010.025208.96540HepG2RECQL
SLC46A1ENSG00000076351.81624.885201004.520900.693709.294208.16120HepG2RPLP0
SLC46A1ENSG00000076351.81590.02660987.402000.687204.935003.69150HepG2RPS10
SLC46A1ENSG00000076351.81207.56610938.936300.362902.508801.74480HepG2RPS2
SLC46A1ENSG00000076351.81587.11660820.566900.9516010.012308.53290HepG2RPS3A
SLC46A1ENSG00000076351.8383.35320676.24790-0.818905.931204.82540HepG2RRP9
SLC46A1ENSG00000076351.8941.23240667.004800.496803.948902.82650HepG2SERBP1
SLC46A1ENSG00000076351.81232.889602083.79900-0.7572020.9261019.55010HepG2SF3B4
SLC46A1ENSG00000076351.81469.297101131.003200.377406.208305.22360HepG2SLBP
SLC46A1ENSG00000076351.8711.22410861.38970-0.276402.641102.00930HepG2SMN1
SLC46A1ENSG00000076351.8892.727701667.92570-0.9018027.1728026.02290HepG2SRFBP1
SLC46A1ENSG00000076351.81782.936702174.99330-0.286804.116503.56780HepG2SRSF1
SLC46A1ENSG00000076351.8314.15190694.25160-1.144007.463005.75540HepG2SRSF3
SLC46A1ENSG00000076351.8970.775201164.61230-0.262602.308901.73080HepG2SRSF5
SLC46A1ENSG00000076351.81416.90470916.136600.6290012.2225010.93830HepG2SRSF7
SLC46A1ENSG00000076351.81040.197701769.43700-0.7664021.4671020.19290HepG2SRSF9
SLC46A1ENSG00000076351.84297.608001448.094401.56930112.51620110.52800HepG2SSB
SLC46A1ENSG00000076351.81031.862301324.46250-0.360204.923304.13460HepG2SUCLG1
SLC46A1ENSG00000076351.81118.16950742.716800.590206.634005.21940HepG2SUPT6H
SLC46A1ENSG00000076351.81931.21160882.597901.1296015.5284014.15720HepG2SUPV3L1
SLC46A1ENSG00000076351.8899.746001954.85310-1.1195035.2195033.50590HepG2TAF15
SLC46A1ENSG00000076351.81216.59000635.415800.9370013.8358012.41610HepG2TARDBP
SLC46A1ENSG00000076351.82554.914001245.892301.036006.490404.93320HepG2TBRG4
SLC46A1ENSG00000076351.81340.683101796.36640-0.422104.999103.88470HepG2TIA1
SLC46A1ENSG00000076351.81530.32950805.946700.9250019.8712018.75510HepG2TIAL1
SLC46A1ENSG00000076351.81776.888101152.359000.624709.464107.66040HepG2TUFM
SLC46A1ENSG00000076351.8735.01440940.98480-0.356402.433801.84120HepG2U2AF1
SLC46A1ENSG00000076351.8297.21610521.30640-0.810606.614905.42830HepG2UCHL5
SLC46A1ENSG00000076351.81676.367201371.215400.289803.779602.98330HepG2UPF1
SLC46A1ENSG00000076351.81074.630401323.86100-0.300903.369702.72090HepG2UTP3
SLC46A1ENSG00000076351.8659.27320988.44020-0.584303.512402.06730HepG2XRCC5
SLC46A1ENSG00000076351.81433.43540868.824000.722206.838805.71340HepG2XRN2
SLC46A1ENSG00000076351.81408.46780916.301200.620108.996607.90340HepG2ZC3H8
SLC46A1ENSG00000076351.81747.258301508.080400.212302.651202.11300HepG2ZNF622
SLC46A1ENSG00000076351.8144.03100262.75600-0.867306.000405.21560K562AGGF1
SLC46A1ENSG00000076351.8197.30510288.69550-0.549103.044501.99980K562AKAP8
SLC46A1ENSG00000076351.8148.23230273.40120-0.883205.881004.90570K562AKAP8L
SLC46A1ENSG00000076351.8435.50800268.516500.697604.309803.60810K562AQR
SLC46A1ENSG00000076351.8212.06860286.84810-0.435802.366001.52720K562ATP5C1
SLC46A1ENSG00000076351.8192.00760314.03470-0.709804.870903.26590K562CCDC124
SLC46A1ENSG00000076351.8233.55380162.461100.523602.281901.56270K562CPSF6
SLC46A1ENSG00000076351.8197.83420308.28400-0.640003.964702.19510K562DDX19B
SLC46A1ENSG00000076351.8433.18480298.306800.538104.306203.51870K562DDX47
SLC46A1ENSG00000076351.8178.13040294.25110-0.724104.498403.34360K562DKC1
SLC46A1ENSG00000076351.8251.04930144.365200.798105.246903.55410K562EIF2S1
SLC46A1ENSG00000076351.8194.78360287.37230-0.561003.321002.54500K562EIF2S2
SLC46A1ENSG00000076351.8198.66810119.724100.730502.290601.38450K562EIF3A
SLC46A1ENSG00000076351.8197.88410128.538100.622403.109402.26780K562EIF3G
SLC46A1ENSG00000076351.8210.58090137.340000.616502.672401.86570K562EIF4A3
SLC46A1ENSG00000076351.8480.43090383.158500.326302.303101.44120K562EIF4G2
SLC46A1ENSG00000076351.8304.96030155.103500.975306.956205.69470K562GPKOW
SLC46A1ENSG00000076351.8678.03880382.963900.824108.633407.27930K562GRSF1
SLC46A1ENSG00000076351.885.43980170.82910-0.999603.071501.76720K562HNRNPA2B1
SLC46A1ENSG00000076351.8176.08140290.17600-0.720704.126403.09160K562KIF1C
SLC46A1ENSG00000076351.8189.12220277.74630-0.554402.448801.45820K562MAK16
SLC46A1ENSG00000076351.8259.07230149.396400.794105.268503.94050K562MATR3
SLC46A1ENSG00000076351.8188.60720325.06640-0.785305.518804.14360K562MBNL1
SLC46A1ENSG00000076351.8276.47900151.401200.868705.478404.22020K562METAP2
SLC46A1ENSG00000076351.8420.84710219.548600.9387010.393808.93280K562MTPAP
SLC46A1ENSG00000076351.8243.36220137.166500.827104.762503.14500K562NCBP2
SLC46A1ENSG00000076351.8334.91740205.839500.702203.051401.74780K562PABPC1
SLC46A1ENSG00000076351.8376.41120236.754700.668803.864202.88150K562PCBP3
SLC46A1ENSG00000076351.8272.52120181.610600.585403.143502.28630K562POLR2G
SLC46A1ENSG00000076351.8575.88890444.580800.373202.937401.83560K562PUM1
SLC46A1ENSG00000076351.8662.81780435.704600.605206.762905.24360K562PUM2
SLC46A1ENSG00000076351.879.55480271.19810-1.7693014.4532013.25120K562PUS1
SLC46A1ENSG00000076351.8132.84270264.19270-0.991907.277706.34670K562RBM15
SLC46A1ENSG00000076351.8241.73950146.747800.720003.884602.56310K562NELFE
SLC46A1ENSG00000076351.8321.37310195.180700.719303.107301.48420K562SBDS
SLC46A1ENSG00000076351.8489.28230364.776700.423603.137101.53800K562SUCLG1
SLC46A1ENSG00000076351.8249.01580182.144100.451102.058801.34920K562SYNCRIP
SLC46A1ENSG00000076351.8216.91150127.031800.771803.635502.55860K562TIAL1
SLC46A1ENSG00000076351.8312.66060207.436200.591802.751201.73560K562UCHL5
SLC46A1ENSG00000076351.8341.66580258.677600.401302.009101.39040K562UPF1
SLC46A1ENSG00000076351.8333.99300230.151300.537102.428301.63200K562WDR43
SLC46A1ENSG00000076351.8485.12700318.152500.608504.822103.11280K562WRN
SLC46A1ENSG00000076351.8492.49530302.487800.703106.040504.68430K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC46A1 is not available on ENCORE database.





2 RBPs can affect the splicing of SLC46A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC46A1ENSG00000076351.8chr17-2672762526727783267226942672672926731633267324860.302000.000170.03351includedHepG2HNRNPA1
SESLC46A1ENSG00000076351.8chr17-2672925526729339267277212672778326731633267324860.103000.004830.08622includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC46A1 is not avaliable on ENCORE database.