UBXN2A

General Information

Gene Name       : UBXN2A
Gene ID             : ENSG00000173960.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBXN2A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBXN2AENSG00000173960.1312.0011.9511.97ENCSR000AEF
HepG2UBXN2AENSG00000173960.137.3216.3611.84ENCSR985KAT
K562UBXN2AENSG00000173960.1313.1813.5813.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBXN2A is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBXN2A RNA is bound by 12 proteins.  







eCLIP assay for UBXN2A is not avaliable on ENCORE database.





12 proteins are bound to UBXN2A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr22422343524223477+3'-UTR6.404857.49093K562PABPC4
chr22416334124163507+5'-UTR,intron-Distal4.599685.46067K562SRSF1
chr22416331024163458+5'-UTR,intron-Distal3.411215.75815K562DDX3X
chr22416332624163521+5'-UTR,intron-Distal,intron-Proximal3.772365.55137HepG2SRSF1
chr22416345824163518+5'-UTR,intron-Distal4.133618.04211K562DDX3X
chr22420753424207589+CDS,intron-Distal,intron-Proximal3.241303.27569HepG2BCLAF1
chr22419414424194192+CDS,intron-Proximal3.484023.28366HepG2BCLAF1
chr22420579724205914+CDS,intron-Proximal3.504245.53307K562ZNF622
chr22419984924199960+CDS,intron-Proximal4.422594.37348HepG2BCLAF1
chr22420758924207707+CDS,intron-Distal,intron-Proximal4.105655.79432HepG2BCLAF1
chr22420583824205909+CDS,intron-Proximal3.211867.13168HepG2BCLAF1
chr22419418324194285+CDS,intron-Proximal4.6220316.45754K562PUM2
chr22419414424194193+CDS,intron-Proximal3.352103.17151K562UCHL5
chr22416361324163730+intron-Distal,intron-Proximal4.767565.98353HepG2EFTUD2
chr22420979024209912+intron-Distal4.144449.44202HepG2ILF3
chr22418995324190094+intron-Distal4.191584.50052K562HNRNPL
chr22421282524212869+intron-Distal4.587285.58765HepG2QKI
chr22419030624190359+intron-Distal4.182273.16986HepG2QKI
chr22421300824213094+intron-Distal3.809203.45317HepG2HNRNPL
chr22416354024163613+intron-Distal,intron-Proximal5.707418.93136HepG2EFTUD2
chr22416363924163720+intron-Distal3.647455.00225K562GEMIN5
chr22416356924163605+intron-Distal,intron-Proximal4.384423.81202K562GEMIN5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBXN2A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBXN2A is not available on ENCORE database.

  • 63 RBPs can affect the levels of UBXN2A.  








The Knockdown/knockout RNA-Seq assay for UBXN2A is not available on ENCORE database.





63 RBPs can affect the gene expression of UBXN2A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBXN2AENSG00000173960.8690.11010526.392300.390603.813603.12090HepG2ACO1
UBXN2AENSG00000173960.8508.19870692.46850-0.446402.054901.37390HepG2ASCC1
UBXN2AENSG00000173960.8699.71570837.91800-0.260002.090001.47780HepG2AUH
UBXN2AENSG00000173960.8413.67150526.28110-0.347302.691802.03360HepG2CKAP4
UBXN2AENSG00000173960.8346.89830645.31860-0.895503.232102.40040HepG2CNOT7
UBXN2AENSG00000173960.8201.58640509.68700-1.3382015.3273013.86900HepG2CPSF6
UBXN2AENSG00000173960.8619.10090807.78370-0.383804.523203.61050HepG2DAZAP1
UBXN2AENSG00000173960.8371.20770518.31150-0.481603.282302.21920HepG2DHX30
UBXN2AENSG00000173960.8311.10840537.40630-0.788609.083807.86220HepG2DNAJC21
UBXN2AENSG00000173960.8323.63620532.59020-0.718705.678304.79190HepG2DNAJC2
UBXN2AENSG00000173960.8524.64950360.292000.542103.633902.60560HepG2EIF3D
UBXN2AENSG00000173960.8594.96940442.552300.426902.986001.86800HepG2EIF3G
UBXN2AENSG00000173960.8271.77850363.05970-0.417802.010801.33190HepG2FUBP3
UBXN2AENSG00000173960.8491.88180684.78260-0.477302.078701.49840HepG2G3BP1
UBXN2AENSG00000173960.8430.37790577.80100-0.425002.186201.61360HepG2GPKOW
UBXN2AENSG00000173960.8330.64990542.55410-0.714506.145105.23630HepG2HNRNPA1
UBXN2AENSG00000173960.8438.62110574.08870-0.388302.916002.18080HepG2HNRNPF
UBXN2AENSG00000173960.8506.50330693.07120-0.452402.549101.87790HepG2HNRNPK
UBXN2AENSG00000173960.8525.60400735.85350-0.485406.091005.12550HepG2HNRNPL
UBXN2AENSG00000173960.8344.76730551.40330-0.677504.925104.11000HepG2HNRNPLL
UBXN2AENSG00000173960.8432.93600599.47960-0.469604.593403.82900HepG2HNRNPU
UBXN2AENSG00000173960.8460.06770612.35260-0.412504.334103.43720HepG2ILF2
UBXN2AENSG00000173960.8215.15610562.29190-1.3859011.872009.84960HepG2MTPAP
UBXN2AENSG00000173960.8635.84350800.99230-0.333102.754601.99230HepG2NOL12
UBXN2AENSG00000173960.8494.27130676.99220-0.453801.984901.36510HepG2PABPC4
UBXN2AENSG00000173960.8412.11470534.69200-0.375702.261801.58870HepG2PPIL4
UBXN2AENSG00000173960.8426.88270603.07390-0.498503.496702.89720HepG2PTBP1
UBXN2AENSG00000173960.8607.48840764.59490-0.331802.275501.72700HepG2PUF60
UBXN2AENSG00000173960.8633.92230811.62510-0.356504.024203.33770HepG2PUM1
UBXN2AENSG00000173960.8607.78050811.04850-0.416203.698402.92850HepG2PUM2
UBXN2AENSG00000173960.8280.86390536.16510-0.9328013.6079012.41990HepG2PUS1
UBXN2AENSG00000173960.81022.58610804.076300.346703.185802.64000HepG2RBM22
UBXN2AENSG00000173960.8881.84770671.208600.393703.340102.75740HepG2NELFE
UBXN2AENSG00000173960.8310.32660533.87690-0.782707.275906.30190HepG2SAFB2
UBXN2AENSG00000173960.8865.50320559.285700.629904.365503.50850HepG2SF3A3
UBXN2AENSG00000173960.8596.47380733.07360-0.297502.688701.99490HepG2SLBP
UBXN2AENSG00000173960.81008.10240655.430500.621007.155806.47850HepG2SRSF1
UBXN2AENSG00000173960.8847.50220587.229900.529203.213302.12630HepG2SRSF3
UBXN2AENSG00000173960.8752.84940533.193300.497604.409703.74340HepG2SRSF9
UBXN2AENSG00000173960.81001.82940589.015900.766209.865308.91140HepG2TAF15
UBXN2AENSG00000173960.8705.93230541.342700.382902.701401.87460HepG2TIA1
UBXN2AENSG00000173960.8341.49390587.70790-0.7832010.824809.81850HepG2TRIM56
UBXN2AENSG00000173960.8179.87680319.87930-0.830502.731901.97620HepG2UCHL5
UBXN2AENSG00000173960.8585.30100478.869700.289401.979701.45550HepG2UTP3
UBXN2AENSG00000173960.8571.16230444.972900.360103.042102.34460HepG2ZC3H8
UBXN2AENSG00000173960.8708.77180545.506200.377603.911803.29200HepG2ZNF622
UBXN2AENSG00000173960.8578.45850752.06210-0.378602.622801.98590K562AKAP8L
UBXN2AENSG00000173960.8525.16330813.30320-0.631003.172502.02320K562CNOT7
UBXN2AENSG00000173960.8702.82360912.86390-0.377203.453702.21220K562CPEB4
UBXN2AENSG00000173960.8390.95990603.88760-0.627305.693904.57650K562CPSF6
UBXN2AENSG00000173960.81857.312101542.378500.268002.697901.73580K562CELF1
UBXN2AENSG00000173960.8428.92630550.50070-0.360002.250901.31810K562DDX3X
UBXN2AENSG00000173960.81304.89390944.629500.466006.890005.92620K562DDX47
UBXN2AENSG00000173960.8381.60940567.39650-0.572303.994602.88180K562EFTUD2
UBXN2AENSG00000173960.8687.23180834.28810-0.279702.121201.47730K562EIF2S2
UBXN2AENSG00000173960.8862.67130598.122200.528306.235505.38180K562FXR1
UBXN2AENSG00000173960.8867.54480600.199300.531403.378702.58310K562G3BP2
UBXN2AENSG00000173960.8384.73980562.79500-0.548704.248803.14800K562METAP2
UBXN2AENSG00000173960.8357.48340504.28800-0.496402.936501.45380K562NUSAP1
UBXN2AENSG00000173960.8361.67160561.25720-0.634002.399701.49120K562PABPN1
UBXN2AENSG00000173960.8628.94220808.33610-0.362002.414801.65120K562PPIG
UBXN2AENSG00000173960.8333.12410459.24510-0.463202.673701.78740K562PSIP1
UBXN2AENSG00000173960.8570.66790744.07420-0.382802.137001.54090K562PTBP1
UBXN2AENSG00000173960.81847.565301368.883800.432504.411603.38770K562PUF60
UBXN2AENSG00000173960.8407.11770745.89290-0.8735010.016909.03050K562PUS1
UBXN2AENSG00000173960.8299.46080418.97290-0.484503.025901.98620K562RCC2
UBXN2AENSG00000173960.8665.79470485.012700.457003.830602.86340K562SYNCRIP
UBXN2AENSG00000173960.8681.99450843.74930-0.307102.639901.40270K562TROVE2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBXN2A is not available on ENCORE database.





6 RBPs can affect the splicing of UBXN2A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBXN2AENSG00000173960.8chr2+241811702418122524163288241635182419414524194284-0.139000.006610.07681excludedK562PUS1
SEUBXN2AENSG00000173960.8chr2+2419178824191905241811702418122524194145241942840.383000.002930.04588includedK562HNRNPC
A3SSUBXN2AENSG00000173960.8chr2+2420570224205903242057652420590324199838241999450.059000.000030.00028longerK562AQR
MXEUBXN2AENSG00000173960.8chr2+2418117024181225241941452419428424163288241635182419983824199945-0.355000.000050.036042includedHepG2CSTF2T
MXEUBXN2AENSG00000173960.8chr2+24181170241812252419414524194284241632882416351824199838241999450.332000.000250.012581includedHepG2SF3B4
MXEUBXN2AENSG00000173960.8chr2+24181170241812252419414524194284241632882416351824199838241999450.232000.000270.017771includedK562IGF2BP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBXN2A is not avaliable on ENCORE database.