ENCORE eCLIP:275

CSTF2T eCLIP in K562

Experiment Information (Status: Released)

	275	275-control
Exp_UID	275	275
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR840DRD	ENCSR722LZB
ENCODE_alias	gene-yeo:275	gene-yeo:275-control
RBP	CSTF2T	CSTF2T
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB005DBK	ENCAB005DBK
Antibody	A301-487A	A301-487A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	91	115

Replicate Information


Rep_UID	275_01	275_02	275_INPUT
Exp UID	275	275	275
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB675HEB	ENCLB570DQA	ENCLB513ZXE
ENCODE_alias	gene-yeo:275_01	gene-yeo:275_02	gene-yeo:275_INPUT
Biosample Name	K562_110314A	K562_022315B	K562_110314A
Biosample_ENCODE_Accession	ENCBS126AJR	ENCBS549CIX	ENCBS126AJR
Biosample_ENCODE_Alias	gene-yeo:K562_110314A	gene-yeo:K562_022315B	gene-yeo:K562_110314A
Cell_Line	K562	K562	K562
Culture_Start_Date	2014-10-03	2015-02-23	2014-10-03
Culture_End_Date	2014-11-03	2015-03-20	2014-11-03
Passage	6	6	6

QC Stats

Experiment QC

	275	275-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	275_01	275_02	275_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	275_01	275_02	275_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	C01	none
inline_barcode_2	B06	D08fixed	none
i5_barcode	502	502	506
i7_barcode	704	704	701

Sequencing Information


Rep_UID	275_01	275_02	275_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/275.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	275	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
275.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	275	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=275)