SLC39A9

General Information

Gene Name       : SLC39A9
Gene ID             : ENSG00000029364.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC39A9)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC39A9ENSG00000029364.1136.8334.1435.48ENCSR000AEF
HepG2SLC39A9ENSG00000029364.1123.2425.7024.47ENCSR985KAT
K562SLC39A9ENSG00000029364.1120.4421.8721.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC39A9 is not avaliable on ENCORE database.



Proteins bound to RNA

  • SLC39A9 RNA is bound by 18 proteins.  







eCLIP assay for SLC39A9 is not avaliable on ENCORE database.





18 proteins are bound to SLC39A9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr146992541069925459+3'-UTR,intron-Distal,intron-Proximal3.850183.15232HepG2LIN28B
chr146992845069928508+3'-UTR4.080056.53861K562FAM120A
chr146992864569928712+3'-UTR3.998053.08128K562IGF2BP1
chr146992824969928335+3'-UTR,intron-Distal,intron-Proximal5.107138.73842K562LIN28B
chr146992761269927692+3'-UTR,intron-Distal3.065683.23853K562IGF2BP2
chr146992752269927585+3'-UTR,intron-Distal4.269317.31669K562FAM120A
chr146992840169928447+3'-UTR,CDS,intron-Proximal4.978296.31097K562FAM120A
chr146992828269928344+3'-UTR,intron-Distal,intron-Proximal5.265658.16295HepG2LIN28B
chr146992805669928155+3'-UTR,intron-Distal4.328133.97692K562IGF2BP1
chr146992686269926921+3'-UTR,intron-Distal4.034893.77503K562TIA1
chr146992753069927632+3'-UTR,intron-Distal3.9762113.03891K562UPF1
chr146992629969926367+3'-UTR,intron-Distal3.885116.33374K562TIA1
chr146992644269926527+3'-UTR,intron-Distal3.6561410.45010HepG2PTBP1
chr146992873669928791+3'-UTR5.6284210.81337K562UPF1
chr146992820669928264+3'-UTR,intron-Distal3.247505.15194K562UPF1
chr146992685569926916+3'-UTR,intron-Distal3.305386.00918K562FAM120A
chr146992644469926518+3'-UTR,intron-Distal3.123787.36443K562PTBP1
chr146992827969928310+3'-UTR,intron-Distal3.462073.80864K562FAM120A
chr146992745669927510+3'-UTR,intron-Distal4.055973.50232K562IGF2BP1
chr146986590069865979+5'-UTR,intron-Distal4.214888.89502K562LIN28B
chr146986550669865552+5'-UTR,intron-Distal4.412623.99162HepG2DDX3X
chr146986556169865646+5'-UTR,intron-Distal7.0666837.18560HepG2DDX3X
chr146986590669865989+5'-UTR,intron-Distal4.303629.74425HepG2LIN28B
chr146986564669865693+5'-UTR,intron-Distal7.7960433.95368HepG2DDX3X
chr146992151169921579+CDS,intron-Proximal3.709314.36528HepG2U2AF2
chr146989087969890966+CDS,intron-Proximal5.232679.06713HepG2PRPF8
chr146991998169920026+CDS,intron-Distal4.189723.83751K562SND1
chr146990889369908984+CDS,intron-Distal,intron-Proximal3.894985.58116K562SND1
chr146992153069921581+CDS4.039943.24875K562SND1
chr146989080569890921+CDS,intron-Proximal3.234813.80299HepG2GRWD1
chr146992251469922584+CDS,intron-Proximal4.440974.89631K562SND1
chr146990895869909027+CDS,intron-Distal,intron-Proximal4.825177.79098HepG2PRPF8
chr146991999669920056+CDS,intron-Distal,intron-Proximal4.891226.01989HepG2PRPF8
chr146987399969874105+intron-Distal4.5326115.64482HepG2PTBP1
chr146990046569900551+intron-Distal3.915523.27829HepG2MATR3
chr146987403769874095+intron-Distal4.644334.40618K562PTBP1
chr146989876469898819+intron-Distal4.208507.31419K562EXOSC5
chr146990657369906629+intron-Distal3.780603.31709K562ILF3
chr146990033569900379+intron-Distal4.428794.80399K562EXOSC5
chr146989874569898821+intron-Distal3.998923.34098HepG2HNRNPM
chr146990769269907778+intron-Distal3.969763.37208HepG2ILF3
chr146989925869899287+intron-Distal4.338503.89080K562EXOSC5
chr146989902569899083+intron-Distal4.040306.71225K562EXOSC5
chr146990156969901661+intron-Distal5.022876.73640K562EXOSC5
chr146989979269899813+intron-Distal4.433243.30696K562EXOSC5
chr146989987269899954+intron-Distal5.261807.38693K562EXOSC5
chr146991242269912478+intron-Distal3.525414.24143HepG2RBFOX2
chr146990170669901765+intron-Distal4.894496.41216K562EXOSC5
chr146989944169899489+intron-Distal3.988766.71225K562EXOSC5
chr146989870169898860+intron-Distal4.707257.09509HepG2SUGP2
chr146989988869899970+intron-Distal3.923933.78162K562HNRNPM
chr146989901969899084+intron-Distal4.426893.07980HepG2HNRNPM
chr146990007769900139+intron-Distal4.403798.51196K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC39A9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC39A9 is not available on ENCORE database.

  • 73 RBPs can affect the levels of SLC39A9.  








The Knockdown/knockout RNA-Seq assay for SLC39A9 is not available on ENCORE database.





73 RBPs can affect the gene expression of SLC39A9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC39A9ENSG00000029364.7804.678901084.48280-0.430503.704302.47210HepG2AATF
SLC39A9ENSG00000029364.71188.780601402.81640-0.238802.585701.99480HepG2ACO1
SLC39A9ENSG00000029364.71252.636802367.29450-0.9183011.7769010.75260HepG2AKAP1
SLC39A9ENSG00000029364.71625.716601110.309900.550004.565503.43640HepG2BCLAF1
SLC39A9ENSG00000029364.72138.346301159.070200.8834015.8698014.60500HepG2BOP1
SLC39A9ENSG00000029364.71984.721501430.416700.472406.244205.14670HepG2CALR
SLC39A9ENSG00000029364.71317.036501782.87130-0.436902.782001.80410HepG2CCAR1
SLC39A9ENSG00000029364.72398.654001860.934400.366102.978902.17630HepG2CIRBP
SLC39A9ENSG00000029364.7784.669001110.24910-0.500703.130701.65570HepG2CSTF2T
SLC39A9ENSG00000029364.71294.347301598.60340-0.304603.445802.74600HepG2CELF1
SLC39A9ENSG00000029364.7810.953801297.40240-0.6779015.8879014.26110HepG2DDX19B
SLC39A9ENSG00000029364.72761.363402267.685500.284101.881701.35550HepG2DDX3X
SLC39A9ENSG00000029364.7738.877101947.99730-1.3986024.5229022.95320HepG2DDX6
SLC39A9ENSG00000029364.7789.222601272.63150-0.6893012.2471010.85380HepG2DNAJC21
SLC39A9ENSG00000029364.71068.953802069.49270-0.9531012.6458011.30780HepG2EIF4A3
SLC39A9ENSG00000029364.72019.385801624.470000.313802.391001.63170HepG2EIF4G2
SLC39A9ENSG00000029364.71545.289902088.04380-0.434303.768802.97120HepG2FXR1
SLC39A9ENSG00000029364.71526.629601206.252300.339702.153901.58550HepG2GPKOW
SLC39A9ENSG00000029364.71540.566301961.36300-0.348402.835602.12730HepG2HNRNPK
SLC39A9ENSG00000029364.71132.437101565.82320-0.467509.281908.11560HepG2HNRNPL
SLC39A9ENSG00000029364.71593.545101151.147300.469104.175203.41730HepG2HNRNPLL
SLC39A9ENSG00000029364.7899.761301419.66530-0.6579013.9625012.69060HepG2HNRNPU
SLC39A9ENSG00000029364.71446.809901968.87550-0.444503.753002.97660HepG2IGF2BP2
SLC39A9ENSG00000029364.71098.459101450.14380-0.400707.461306.32020HepG2ILF2
SLC39A9ENSG00000029364.71566.534602100.46140-0.423103.129102.46180HepG2MATR3
SLC39A9ENSG00000029364.71672.381901309.388100.352903.011602.16790HepG2MSI2
SLC39A9ENSG00000029364.71425.275401704.48360-0.258102.394601.68680HepG2NOL12
SLC39A9ENSG00000029364.71075.606801405.24520-0.385705.178904.06740HepG2PARN
SLC39A9ENSG00000029364.71074.844201266.23080-0.236401.998201.36350HepG2PPIL4
SLC39A9ENSG00000029364.7689.97650969.06220-0.490003.829802.89910HepG2PRPF8
SLC39A9ENSG00000029364.71426.663401725.93880-0.274702.501101.86300HepG2PUM2
SLC39A9ENSG00000029364.72056.100201428.858900.5249012.0860010.95510HepG2PUS1
SLC39A9ENSG00000029364.71382.727801650.65610-0.255502.259301.47470HepG2RBM15
SLC39A9ENSG00000029364.71807.635402142.27280-0.245002.785502.24310HepG2NELFE
SLC39A9ENSG00000029364.71575.672101995.31370-0.340604.846204.06010HepG2RECQL
SLC39A9ENSG00000029364.7858.013501382.79630-0.688505.550304.41140HepG2RPS3A
SLC39A9ENSG00000029364.72360.303501779.052700.407802.455501.82090HepG2SF3A3
SLC39A9ENSG00000029364.71676.107901139.418100.556706.285305.25800HepG2SF3B1
SLC39A9ENSG00000029364.71039.621501474.38420-0.5041010.658309.52820HepG2SMN1
SLC39A9ENSG00000029364.71699.898801267.799000.423002.164301.47680HepG2SNRNP70
SLC39A9ENSG00000029364.72522.480302193.412400.201602.618702.12580HepG2SRFBP1
SLC39A9ENSG00000029364.72860.763902091.840500.4515010.049809.27350HepG2SRSF1
SLC39A9ENSG00000029364.71810.526401483.600600.287202.529201.86140HepG2SRSF7
SLC39A9ENSG00000029364.7689.396601202.83330-0.803007.522605.64300HepG2STIP1
SLC39A9ENSG00000029364.71594.116001827.02120-0.196702.266901.69370HepG2SUCLG1
SLC39A9ENSG00000029364.71638.258601092.449000.584507.721506.20550HepG2SUPT6H
SLC39A9ENSG00000029364.71649.238301250.731100.398902.470601.82690HepG2SUPV3L1
SLC39A9ENSG00000029364.7908.695801880.33250-1.0491030.2555028.66590HepG2TAF15
SLC39A9ENSG00000029364.72185.006101384.097300.658607.859506.80510HepG2U2AF1
SLC39A9ENSG00000029364.71055.164001523.25450-0.529709.425908.42760HepG2UTP3
SLC39A9ENSG00000029364.71790.545101382.912300.372606.463105.50670HepG2ZC3H8
SLC39A9ENSG00000029364.72361.510701735.221100.4445011.1802010.26270HepG2ZNF622
SLC39A9ENSG00000029364.72260.318201992.862700.181601.998001.50060K562AGGF1
SLC39A9ENSG00000029364.73715.035002003.336600.8909017.5605016.24690K562AQR
SLC39A9ENSG00000029364.72537.896103001.44530-0.242002.302301.41360K562CELF1
SLC39A9ENSG00000029364.71655.617902338.17480-0.498005.316803.24000K562DDX19B
SLC39A9ENSG00000029364.71030.037801244.04960-0.272302.473701.33130K562DDX21
SLC39A9ENSG00000029364.71397.398701874.35310-0.423606.858305.89690K562DDX47
SLC39A9ENSG00000029364.72569.789702231.324000.203702.219801.44630K562DKC1
SLC39A9ENSG00000029364.71480.636401081.195800.453503.342402.19760K562EIF3D
SLC39A9ENSG00000029364.7874.600301061.75120-0.279702.546901.78290K562EIF3G
SLC39A9ENSG00000029364.71926.389402441.01500-0.341604.574003.37800K562EIF4G2
SLC39A9ENSG00000029364.7740.28250983.89210-0.410402.737201.61850K562FKBP4
SLC39A9ENSG00000029364.71210.06750938.626200.366403.134801.69770K562FUS
SLC39A9ENSG00000029364.71825.857201402.692600.380302.233101.60760K562G3BP2
SLC39A9ENSG00000029364.71188.813901485.32160-0.321302.858801.76760K562HNRNPA1
SLC39A9ENSG00000029364.7854.941401133.59240-0.407003.543302.87820K562HNRNPC
SLC39A9ENSG00000029364.71174.433901693.90290-0.528406.670004.95840K562HNRNPL
SLC39A9ENSG00000029364.7999.237601644.83620-0.7190014.3360012.37100K562HNRNPU
SLC39A9ENSG00000029364.71309.561601777.90360-0.441105.073703.77810K562MATR3
SLC39A9ENSG00000029364.71238.622401537.75980-0.312104.730903.78980K562NSUN2
SLC39A9ENSG00000029364.71391.603001730.80280-0.314702.949302.26630K562PTBP1
SLC39A9ENSG00000029364.72262.202802775.64650-0.295103.727302.61080K562PUM2
SLC39A9ENSG00000029364.72614.341202056.402800.346203.297602.71270K562PUS1
SLC39A9ENSG00000029364.72427.136602003.753700.276503.205502.57450K562RBM15
SLC39A9ENSG00000029364.71287.828201659.76400-0.366003.166202.26110K562RBM22
SLC39A9ENSG00000029364.71404.054101746.60550-0.315002.298401.32330K562NELFE
SLC39A9ENSG00000029364.7765.625401000.92270-0.386602.130501.41820K562RPS19
SLC39A9ENSG00000029364.72109.069101197.117800.816903.179501.86440K562SF1
SLC39A9ENSG00000029364.7549.85710732.72000-0.414202.949701.64240K562SLBP
SLC39A9ENSG00000029364.7766.727501375.66030-0.843304.391702.32790K562STIP1
SLC39A9ENSG00000029364.71227.217601717.26630-0.484704.737103.80360K562TARDBP
SLC39A9ENSG00000029364.71853.099201359.900500.446303.485202.22700K562U2AF1
SLC39A9ENSG00000029364.71690.708201404.404200.267602.374301.63030K562U2AF2
SLC39A9ENSG00000029364.71168.357701450.86330-0.312404.134803.11490K562WDR43
SLC39A9ENSG00000029364.71870.342002256.73730-0.270902.134001.38660K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC39A9 is not available on ENCORE database.





9 RBPs can affect the splicing of SLC39A9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC39A9ENSG00000029364.7chr14+6992055969920750699198946992002669921528699216140.092000.005310.04884includedK562AQR
SESLC39A9ENSG00000029364.7chr14+6990854869908689698907796989091969908785699089830.323000.000000.00000includedK562AQR
SESLC39A9ENSG00000029364.7chr14+699087856990898369890810698909196991995769920017-0.226000.000000.00010excludedK562AQR
SESLC39A9ENSG00000029364.7chr14+6990854869908689698908106989091969908785699089830.178000.000000.00000includedK562HNRNPC
A3SSSLC39A9ENSG00000029364.7chr14+6992149869921614699215286992161469919894699200260.409000.000000.00000longerK562AQR
A5SSSLC39A9ENSG00000029364.7chr14+6989077969890988698907796989091969908548699086890.367000.004610.06776longerK562AQR
RISLC39A9ENSG00000029364.7chr14+699250796992909869925079699254466992841369929098-0.149000.000390.02241excludedHepG2AKAP1
RISLC39A9ENSG00000029364.7chr14+699250796992909869925079699254466992841369929098-0.102000.002670.04803excludedHepG2PCBP2
RISLC39A9ENSG00000029364.7chr14+699250796992909869925079699254466992841369929098-0.079000.005310.05249excludedHepG2SF3A3
RISLC39A9ENSG00000029364.7chr14+699250796992909869925079699254466992841369929098-0.246000.000000.00001excludedK562HNRNPC
RISLC39A9ENSG00000029364.7chr14+699250796992909869925079699254466992841369929098-0.135000.003580.09116excludedK562SF3B1
RISLC39A9ENSG00000029364.7chr14+699250796992909869925079699254466992841369929098-0.262000.000000.00000excludedK562HNRNPL
RISLC39A9ENSG00000029364.7chr14+699250796992909869925079699254466992841369929098-0.159000.000130.00105excludedK562AQR
MXESLC39A9ENSG00000029364.7chr14+69890779698909196990874469908983698654066986618269919957699200260.172000.004400.032261includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+69890779698909196990878569908983698654066986618269919957699200260.168000.004460.032581includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+69890779698909886990878569908983698647316986516769919957699200170.113000.012170.074171includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+69919957699200266992149869921614698907796989091969922448699225830.172000.001250.011111includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+69919957699200266992152869921614698908106989091969922448699225830.181000.000460.004641includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+69890743698909196990874469908983698654066986618269919957699200260.165000.005250.037461includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+69890743698909196990878569908983698654066986618269919957699200260.162000.005640.039841includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+6990878569908983699199576992002669890810698909196992152869921614-0.260000.000010.000222includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+6990878569908983699199266992002669890779698909196992152869921614-0.184000.002350.019072includedK562AQR
MXESLC39A9ENSG00000029364.7chr14+69908785699089836991995769920026698908106989091969921528699216140.217000.001220.050551includedHepG2BCCIP
MXESLC39A9ENSG00000029364.7chr14+69908785699089836991995769920026698908106989091969921528699216140.197000.000500.021531includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC39A9 is not avaliable on ENCORE database.