CP

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CP	ENSG00000047457.13	0.00	0.00	0.00	ENCSR000AEF
HepG2	CP	ENSG00000047457.13	143.47	197.49	170.48	ENCSR985KAT
K562	CP	ENSG00000047457.13	0.00	0.01	0.01	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CP is not avaliable on ENCORE database.

Proteins bound to RNA

CP RNA is bound by 26 proteins.

eCLIP assay for CP is not avaliable on ENCORE database.

26 proteins are bound to CP RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	148891380	148891403	-	3'-UTR,intron-Distal	3.44882	18.24545	HepG2	BCLAF1
chr3	148891209	148891271	-	3'-UTR,intron-Distal,intron-Proximal	3.00813	8.68042	HepG2	UPF1
chr3	148890349	148890385	-	3'-UTR,intron-Distal	3.19045	5.06049	HepG2	ZC3H11A
chr3	148890820	148890866	-	3'-UTR,intron-Distal	3.52142	8.73423	HepG2	UPF1
chr3	148891311	148891337	-	3'-UTR,intron-Distal	3.19573	15.53994	HepG2	BCLAF1
chr3	148939743	148939794	-	5'-UTR,intron-Distal	3.13510	5.04173	HepG2	NCBP2
chr3	148939584	148939647	-	5'-UTR,intron-Distal,intron-Proximal	3.60527	5.84843	HepG2	DDX3X
chr3	148939578	148939605	-	5'-UTR,CDS,intron-Distal	3.20120	18.36276	HepG2	BCLAF1
chr3	148917595	148917633	-	CDS,intron-Distal,intron-Proximal	3.12231	45.89541	HepG2	BCLAF1
chr3	148930237	148930241	-	CDS,intron-Distal,intron-Proximal	3.05972	21.52584	HepG2	BCLAF1
chr3	148895706	148895745	-	CDS,intron-Distal,intron-Proximal	3.43170	4.76040	HepG2	SND1
chr3	148904467	148904488	-	CDS,intron-Distal	3.15344	24.76417	HepG2	BCLAF1
chr3	148925339	148925394	-	CDS,intron-Distal	3.86616	6.65960	HepG2	RPS3
chr3	148927020	148927045	-	CDS,intron-Distal	3.65578	40.78619	HepG2	BCLAF1
chr3	148894064	148894109	-	CDS,intron-Distal,intron-Proximal	4.52103	9.57990	HepG2	RPS3
chr3	148897353	148897373	-	CDS,intron-Distal	3.85746	3.59112	HepG2	PPIG
chr3	148926998	148927020	-	CDS,intron-Distal	3.13554	23.91482	HepG2	BCLAF1
chr3	148925237	148925302	-	CDS,intron-Distal	3.40828	8.11639	HepG2	ZNF800
chr3	148925346	148925387	-	CDS,intron-Distal	3.05365	6.43042	HepG2	SND1
chr3	148905911	148905954	-	CDS,intron-Distal,intron-Proximal	3.87362	34.18892	HepG2	BCLAF1
chr3	148925249	148925308	-	CDS,intron-Distal	3.44495	6.37043	HepG2	SND1
chr3	148917533	148917590	-	CDS,intron-Distal	3.81868	49.56152	HepG2	BCLAF1
chr3	148923986	148924022	-	CDS,intron-Distal	3.07497	22.15527	HepG2	BCLAF1
chr3	148923953	148923981	-	CDS,intron-Distal,intron-Proximal	3.02191	4.59907	HepG2	PPIG
chr3	148927100	148927138	-	CDS,intron-Distal,intron-Proximal	3.24322	41.28462	HepG2	BCLAF1
chr3	148895677	148895732	-	CDS,intron-Distal,intron-Proximal	3.65045	43.15627	HepG2	BCLAF1
chr3	148919931	148919968	-	CDS,intron-Distal	3.41022	36.29586	HepG2	BCLAF1
chr3	148916159	148916182	-	CDS,intron-Distal	5.67572	32.89775	HepG2	BCLAF1
chr3	148917591	148917651	-	CDS,intron-Distal,intron-Proximal	3.03248	8.83639	HepG2	ZNF800
chr3	148925355	148925456	-	CDS,intron-Distal,intron-Proximal	3.40851	16.50230	HepG2	SF3A3
chr3	148917645	148917651	-	CDS,intron-Distal,intron-Proximal	4.34979	14.07125	HepG2	SND1
chr3	148928026	148928069	-	CDS,intron-Distal,intron-Proximal	3.37283	7.41718	HepG2	SND1
chr3	148904406	148904450	-	CDS,intron-Distal	3.22124	6.92216	HepG2	SND1
chr3	148925150	148925158	-	CDS,intron-Distal	3.00755	16.11799	HepG2	BCLAF1
chr3	148927046	148927071	-	CDS,intron-Distal	3.71393	55.04008	HepG2	BCLAF1
chr3	148904511	148904519	-	CDS,intron-Distal	3.47624	7.76028	HepG2	ZNF800
chr3	148904360	148904407	-	CDS,intron-Distal	3.45851	36.40445	HepG2	BCLAF1
chr3	148925167	148925232	-	CDS,intron-Distal	4.65401	15.34471	HepG2	RPS3
chr3	148924070	148924127	-	CDS,intron-Distal,intron-Proximal	3.32873	9.44988	HepG2	PPIG
chr3	148919998	148920013	-	CDS,intron-Distal	3.20734	32.52333	HepG2	BCLAF1
chr3	148905838	148905854	-	CDS,intron-Distal,intron-Proximal	3.60776	7.76028	HepG2	ZNF800
chr3	148894059	148894109	-	CDS,intron-Distal,intron-Proximal	3.43396	7.87413	HepG2	SND1
chr3	148916324	148916367	-	CDS,intron-Distal,intron-Proximal	3.64120	13.22783	HepG2	RPS3
chr3	148927966	148928028	-	CDS,intron-Distal	3.50681	9.05790	HepG2	RPS3
chr3	148917606	148917642	-	CDS,intron-Distal,intron-Proximal	3.48715	8.57574	HepG2	PPIG
chr3	148925340	148925404	-	CDS,intron-Distal	3.43334	48.79675	HepG2	BCLAF1
chr3	148904341	148904391	-	CDS,intron-Distal	3.41560	3.13437	HepG2	IGF2BP1
chr3	148897355	148897367	-	CDS,intron-Distal	4.02093	4.37103	HepG2	SND1
chr3	148917604	148917652	-	CDS,intron-Distal,intron-Proximal	3.82609	13.24794	HepG2	RPS3
chr3	148927072	148927100	-	CDS,intron-Distal	3.85571	59.04257	HepG2	BCLAF1
chr3	148905862	148905898	-	CDS,intron-Distal,intron-Proximal	3.18632	3.87859	HepG2	AGGF1
chr3	148904465	148904511	-	CDS,intron-Distal	3.54292	12.42774	HepG2	ZNF800
chr3	148919901	148919937	-	CDS,intron-Distal	3.59818	12.03491	HepG2	SND1
chr3	148925379	148925434	-	CDS,intron-Distal,intron-Proximal	4.23089	19.18384	HepG2	AQR
chr3	148919978	148919998	-	CDS,intron-Distal	3.46401	34.92220	HepG2	BCLAF1
chr3	148925168	148925237	-	CDS,intron-Distal	4.58224	16.71019	HepG2	ZNF800
chr3	148919891	148919901	-	CDS,intron-Distal	4.23041	18.45267	HepG2	SND1
chr3	148925159	148925236	-	CDS,intron-Distal	3.14757	76.33276	HepG2	BCLAF1
chr3	148924075	148924126	-	CDS,intron-Distal	5.25009	8.26344	HepG2	RPS3
chr3	148904427	148904460	-	CDS,intron-Distal	4.53403	5.51254	HepG2	RPS3
chr3	148926971	148927037	-	CDS,intron-Distal,intron-Proximal	3.13783	5.89918	HepG2	PRPF8
chr3	148927970	148928016	-	CDS,intron-Distal	4.05422	3.70369	HepG2	LIN28B
chr3	148897344	148897385	-	CDS,intron-Distal	5.12280	7.15341	HepG2	RPS3
chr3	148917642	148917652	-	CDS,intron-Distal,intron-Proximal	4.49869	9.88154	HepG2	PPIG
chr3	148928039	148928104	-	CDS,intron-Distal,intron-Proximal	3.13998	14.67592	HepG2	PPIG
chr3	148916316	148916365	-	CDS,intron-Distal,intron-Proximal	3.34716	11.97852	HepG2	ZNF800
chr3	148925340	148925379	-	CDS,intron-Distal	3.79451	8.91632	HepG2	AQR
chr3	148917497	148917525	-	CDS,intron-Distal,intron-Proximal	3.40358	10.52927	HepG2	ZNF800
chr3	148899891	148899920	-	CDS,intron-Distal	3.15266	20.15781	HepG2	BCLAF1
chr3	148904407	148904450	-	CDS,intron-Distal	3.07522	28.75666	HepG2	BCLAF1
chr3	148925160	148925224	-	CDS,intron-Distal	3.22445	13.95711	HepG2	PPIG
chr3	148917597	148917645	-	CDS,intron-Distal,intron-Proximal	3.93276	24.53334	HepG2	SND1
chr3	148927009	148927018	-	CDS,intron-Distal	3.06199	9.95640	HepG2	AQR
chr3	148899805	148899872	-	CDS,intron-Distal	3.17516	3.46494	HepG2	IGF2BP1
chr3	148919888	148919891	-	CDS,intron-Distal,intron-Proximal	4.09740	14.04650	HepG2	SND1
chr3	148903062	148903119	-	CDS,intron-Distal	5.98645	12.46358	HepG2	LIN28B
chr3	148896241	148896268	-	CDS,intron-Distal	3.28605	15.43016	HepG2	BCLAF1
chr3	148899804	148899850	-	CDS,intron-Distal	3.71134	9.17063	HepG2	SND1
chr3	148925147	148925160	-	CDS,intron-Distal,intron-Proximal	3.18796	5.77687	HepG2	PPIG
chr3	148925260	148925300	-	CDS,intron-Distal	3.42679	28.65740	HepG2	BCLAF1
chr3	148904467	148904512	-	CDS,intron-Distal	4.42293	5.89969	HepG2	SDAD1
chr3	148926978	148927009	-	CDS,intron-Distal,intron-Proximal	3.50279	10.98906	HepG2	AQR
chr3	148905838	148905852	-	CDS,intron-Distal,intron-Proximal	4.45619	45.35967	HepG2	BCLAF1
chr3	148925149	148925155	-	CDS,intron-Distal,intron-Proximal	4.25432	3.91339	HepG2	RPS3
chr3	148896358	148896417	-	CDS,intron-Distal	3.72345	5.86107	HepG2	PPIG
chr3	148928028	148928092	-	CDS,intron-Distal,intron-Proximal	3.43712	10.30206	HepG2	RPS3
chr3	148925362	148925402	-	CDS,intron-Distal	3.02601	9.23186	HepG2	ZNF800
chr3	148927966	148928006	-	CDS,intron-Distal	3.23341	19.19076	HepG2	BCLAF1
chr3	148925162	148925216	-	CDS,intron-Distal	3.40161	15.17030	HepG2	SND1
chr3	148928066	148928129	-	CDS,intron-Distal,intron-Proximal	3.94198	400.00000	HepG2	BCLAF1
chr3	148904513	148904519	-	CDS,intron-Distal	4.16889	33.18560	HepG2	BCLAF1
chr3	148925300	148925321	-	CDS,intron-Distal	3.88751	18.34855	HepG2	BCLAF1
chr3	148928036	148928066	-	CDS,intron-Distal,intron-Proximal	4.37808	71.60658	HepG2	BCLAF1
chr3	148895732	148895758	-	CDS,intron-Distal,intron-Proximal	3.96511	33.34423	HepG2	BCLAF1
chr3	148928044	148928120	-	CDS,intron-Distal,intron-Proximal	3.14524	9.44385	HepG2	SDAD1
chr3	148917498	148917539	-	CDS,intron-Distal,intron-Proximal	3.37326	8.67038	HepG2	RPS3
chr3	148919968	148919978	-	CDS,intron-Distal	3.93914	25.55103	HepG2	BCLAF1
chr3	148925392	148925449	-	CDS,intron-Distal,intron-Proximal	3.07533	8.59856	HepG2	BUD13
chr3	148894054	148894108	-	CDS,intron-Distal,intron-Proximal	4.25591	3.74540	HepG2	IGF2BP1
chr3	148903070	148903111	-	CDS,intron-Distal	3.15556	8.16505	HepG2	SND1
chr3	148901252	148901279	-	CDS,intron-Distal,intron-Proximal	3.07585	18.68905	HepG2	BCLAF1
chr3	148905914	148905945	-	CDS,intron-Distal,intron-Proximal	4.19611	3.23259	HepG2	LIN28B
chr3	148917578	148917651	-	CDS,intron-Distal,intron-Proximal	4.32292	7.13764	HepG2	SDAD1
chr3	148899850	148899874	-	CDS,intron-Distal	3.45396	4.57820	HepG2	SND1
chr3	148904488	148904513	-	CDS,intron-Distal	3.83033	40.74266	HepG2	BCLAF1
chr3	148895702	148895749	-	CDS,intron-Distal,intron-Proximal	3.74896	10.98847	HepG2	ZNF800
chr3	148930335	148930387	-	CDS,intron-Distal	3.50624	7.35214	HepG2	ZNF800
chr3	148905852	148905911	-	CDS,intron-Distal,intron-Proximal	4.92259	74.98615	HepG2	BCLAF1
chr3	148905840	148905913	-	CDS,intron-Distal,intron-Proximal	3.76608	7.07289	HepG2	LIN28B
chr3	148902822	148902927	-	intron-Distal,intron-Proximal	3.53926	12.12671	HepG2	HNRNPL
chr3	148926022	148926065	-	intron-Distal	5.01350	12.70600	HepG2	QKI
chr3	148925434	148925473	-	intron-Distal,intron-Proximal	4.82624	4.28193	HepG2	AQR
chr3	148917471	148917496	-	intron-Distal,intron-Proximal	4.22905	3.93614	HepG2	AQR
chr3	148913920	148914021	-	intron-Distal	3.15300	14.21784	HepG2	HNRNPL
chr3	148931354	148931401	-	intron-Distal	3.15677	4.71462	HepG2	HNRNPL
chr3	148923493	148923549	-	intron-Distal	4.99560	4.12401	HepG2	U2AF2
chr3	148925639	148925717	-	intron-Distal	3.93090	6.96969	HepG2	HNRNPL
chr3	148902695	148902787	-	intron-Distal	3.79947	12.13893	HepG2	HNRNPL
chr3	148924207	148924270	-	intron-Distal,intron-Proximal	3.15849	3.53952	HepG2	KHSRP
chr3	148926861	148926968	-	intron-Distal,intron-Proximal	3.90306	7.61543	HepG2	U2AF2
chr3	148909978	148910093	-	intron-Distal	4.21657	3.80778	HepG2	QKI
chr3	148926929	148926959	-	intron-Distal,intron-Proximal	4.35301	3.93614	HepG2	AQR
chr3	148922003	148922057	-	intron-Distal	4.03578	3.27714	HepG2	HNRNPL
chr3	148905564	148905705	-	intron-Distal,intron-Proximal	4.59941	8.82120	HepG2	CSTF2
chr3	148926273	148926338	-	intron-Distal	3.89562	12.44453	HepG2	QKI
chr3	148926065	148926152	-	intron-Distal	5.25442	38.21478	HepG2	QKI
chr3	148921778	148921852	-	intron-Distal	3.92234	3.89405	HepG2	PTBP1
chr3	148906459	148906530	-	intron-Distal	3.32064	5.59320	HepG2	SUGP2
chr3	148915879	148915954	-	intron-Distal	4.15736	10.24078	HepG2	HNRNPL
chr3	148898928	148898987	-	intron-Distal	4.79044	4.36190	HepG2	TAF15
chr3	148926187	148926236	-	intron-Distal	5.33528	40.14928	HepG2	QKI
chr3	148922101	148922176	-	intron-Distal	3.60362	6.71645	HepG2	PTBP1
chr3	148899625	148899678	-	intron-Distal	4.76821	4.81029	HepG2	TAF15
chr3	148925982	148926021	-	intron-Distal	4.77035	9.85601	HepG2	QKI
chr3	148898044	148898101	-	intron-Distal	3.15959	3.52283	HepG2	SAFB
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CP is not available on ENCORE database.
143 RBPs can affect the levels of CP.

The Knockdown/knockout RNA-Seq assay for CP is not available on ENCORE database.

143 RBPs can affect the gene expression of CP :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CP	ENSG00000047457.9	17918.56920	29950.21710	-0.74110	16.56410	14.28530	HepG2	AATF
CP	ENSG00000047457.9	12095.81770	35578.40390	-1.55650	47.76840	45.04350	HepG2	ABCF1
CP	ENSG00000047457.9	12376.48620	32835.15410	-1.40760	155.48410	152.82220	HepG2	ACO1
CP	ENSG00000047457.9	10580.43240	23606.46860	-1.15780	30.27410	27.64820	HepG2	ADAR
CP	ENSG00000047457.9	27846.68200	45039.61040	-0.69370	8.80750	7.91920	HepG2	AKAP1
CP	ENSG00000047457.9	29544.87770	47503.98280	-0.68510	3.06980	1.97610	HepG2	AKAP8
CP	ENSG00000047457.9	6748.30350	17803.09580	-1.39950	16.65480	14.18840	HepG2	BCCIP
CP	ENSG00000047457.9	40116.50830	15471.25520	1.37450	33.81050	31.26090	HepG2	BCLAF1
CP	ENSG00000047457.9	58824.38490	37263.52550	0.65860	13.37410	11.89800	HepG2	CALR
CP	ENSG00000047457.9	12368.77800	44105.09850	-1.83420	26.65040	23.88840	HepG2	CCAR1
CP	ENSG00000047457.9	17367.85750	32826.83300	-0.91850	83.23930	80.85750	HepG2	CKAP4
CP	ENSG00000047457.9	8672.65170	32631.33330	-1.91170	16.41260	14.61170	HepG2	CNOT7
CP	ENSG00000047457.9	49488.63970	11735.73390	2.07610	42.31260	40.07620	HepG2	CPSF6
CP	ENSG00000047457.9	49290.14940	29293.86380	0.75060	18.40680	15.86610	HepG2	CPSF7
CP	ENSG00000047457.9	28733.59960	24208.51980	0.24710	3.72360	2.54030	HepG2	YBX3
CP	ENSG00000047457.9	3766.27350	10999.36240	-1.54620	19.84600	17.47050	HepG2	CSTF2
CP	ENSG00000047457.9	22826.47000	30665.53680	-0.42590	3.03370	1.59060	HepG2	CSTF2T
CP	ENSG00000047457.9	31426.21460	35570.96800	-0.17870	2.32720	1.72910	HepG2	CELF1
CP	ENSG00000047457.9	33295.52050	38250.50330	-0.20020	5.09770	4.13660	HepG2	DAZAP1
CP	ENSG00000047457.9	14801.45540	30367.26860	-1.03680	86.81010	83.95900	HepG2	DDX19B
CP	ENSG00000047457.9	15416.26810	24241.55670	-0.65300	22.36550	19.71760	HepG2	DDX1
CP	ENSG00000047457.9	7196.51030	33044.17310	-2.19900	126.20760	123.06920	HepG2	DDX21
CP	ENSG00000047457.9	19103.83670	32336.26510	-0.75930	21.23700	18.97910	HepG2	DDX24
CP	ENSG00000047457.9	23787.01090	16379.54850	0.53820	3.53530	2.09990	HepG2	DDX27
CP	ENSG00000047457.9	14069.93310	43143.89170	-1.61650	50.34940	48.00340	HepG2	DDX3X
CP	ENSG00000047457.9	16928.94740	27980.83270	-0.72490	9.70950	7.47850	HepG2	DDX52
CP	ENSG00000047457.9	72130.35940	37063.02080	0.96050	16.17190	14.84110	HepG2	DDX6
CP	ENSG00000047457.9	29636.31750	22926.41190	0.37030	4.56690	3.32020	HepG2	DHX30
CP	ENSG00000047457.9	16236.65440	31414.03820	-0.95220	61.34360	59.27360	HepG2	DKC1
CP	ENSG00000047457.9	14457.14780	23769.90450	-0.71740	27.03150	25.08700	HepG2	DNAJC21
CP	ENSG00000047457.9	13486.86480	33387.52380	-1.30780	18.88510	16.81450	HepG2	EEF2
CP	ENSG00000047457.9	78576.09860	35628.06730	1.14100	26.93080	25.21390	HepG2	EIF2S1
CP	ENSG00000047457.9	18848.75230	27104.91930	-0.52410	4.33000	3.21840	HepG2	EIF3D
CP	ENSG00000047457.9	23773.66020	31204.88520	-0.39240	6.25200	4.72470	HepG2	EIF3G
CP	ENSG00000047457.9	19131.71640	39372.46980	-1.04120	18.41270	16.77680	HepG2	EIF4A3
CP	ENSG00000047457.9	27151.68350	37733.90240	-0.47480	16.55450	14.86560	HepG2	EIF4G1
CP	ENSG00000047457.9	70062.69970	36147.12440	0.95470	22.65730	20.54230	HepG2	EIF4G2
CP	ENSG00000047457.9	24595.71710	30816.23060	-0.32530	3.58510	2.34850	HepG2	ESF1
CP	ENSG00000047457.9	17631.75250	29573.85130	-0.74610	5.70240	4.89150	HepG2	ETF1
CP	ENSG00000047457.9	13247.25210	32084.76030	-1.27620	51.20540	48.22790	HepG2	EWSR1
CP	ENSG00000047457.9	10686.66460	35924.45060	-1.74920	54.60140	52.05960	HepG2	FIP1L1
CP	ENSG00000047457.9	25260.81540	14569.93760	0.79380	13.87430	11.46420	HepG2	FKBP4
CP	ENSG00000047457.9	19546.62560	25213.26890	-0.36730	5.03160	3.98410	HepG2	FUBP3
CP	ENSG00000047457.9	18431.39450	41788.28650	-1.18090	5.02420	3.54600	HepG2	FUS
CP	ENSG00000047457.9	17105.45810	39727.38830	-1.21570	30.77670	28.78130	HepG2	FXR1
CP	ENSG00000047457.9	24074.72070	36851.81200	-0.61420	7.62050	6.54250	HepG2	G3BP1
CP	ENSG00000047457.9	26493.37990	39124.44620	-0.56240	7.68830	6.19030	HepG2	G3BP2
CP	ENSG00000047457.9	6622.92860	24133.93140	-1.86550	28.55000	26.11700	HepG2	GEMIN5
CP	ENSG00000047457.9	19048.20150	31347.45360	-0.71870	33.53450	30.83410	HepG2	HDGF
CP	ENSG00000047457.9	18125.65710	27570.58450	-0.60510	4.12270	2.42910	HepG2	HNRNPA0
CP	ENSG00000047457.9	3890.28170	23997.64340	-2.62490	180.62110	177.42970	HepG2	HNRNPA1
CP	ENSG00000047457.9	54311.37290	35151.87080	0.62760	25.96870	23.70850	HepG2	HNRNPA2B1
CP	ENSG00000047457.9	23818.44760	11497.89310	1.05060	16.31750	14.76890	HepG2	HNRNPF
CP	ENSG00000047457.9	58141.56890	34844.18480	0.73860	46.80050	44.45160	HepG2	HNRNPL
CP	ENSG00000047457.9	11450.02970	24783.00630	-1.11400	41.64830	38.90300	HepG2	HNRNPM
CP	ENSG00000047457.9	10971.06010	26516.92890	-1.27320	90.35200	87.54050	HepG2	HNRNPU
CP	ENSG00000047457.9	16851.64210	11322.02920	0.57370	4.45540	3.55530	HepG2	IGF2BP1
CP	ENSG00000047457.9	22334.91670	37458.64690	-0.74600	12.58060	11.26070	HepG2	IGF2BP2
CP	ENSG00000047457.9	39958.50540	27086.07860	0.56090	36.00820	33.78070	HepG2	ILF2
CP	ENSG00000047457.9	23302.95320	51696.92080	-1.14960	5.91670	4.07840	HepG2	KRR1
CP	ENSG00000047457.9	24001.71650	46551.82810	-0.95570	8.73060	7.24860	HepG2	LARP4
CP	ENSG00000047457.9	17431.04780	29667.29570	-0.76720	5.69530	4.08370	HepG2	LARP7
CP	ENSG00000047457.9	13892.49980	31161.65070	-1.16550	10.12690	7.93720	HepG2	LIN28B
CP	ENSG00000047457.9	10005.27980	39741.26770	-1.98990	73.25490	70.17740	HepG2	MAGOH
CP	ENSG00000047457.9	16020.85170	39963.33430	-1.31870	30.41610	28.50380	HepG2	MATR3
CP	ENSG00000047457.9	19238.82110	28368.94040	-0.56030	2.82410	1.76010	HepG2	METAP2
CP	ENSG00000047457.9	16908.06410	29069.62450	-0.78180	21.70050	19.73150	HepG2	MSI2
CP	ENSG00000047457.9	49841.33100	12952.35800	1.94400	5.92500	4.48140	HepG2	MTPAP
CP	ENSG00000047457.9	42833.21790	24411.13350	0.81110	16.30090	13.44560	HepG2	NAA15
CP	ENSG00000047457.9	27070.14230	40904.40160	-0.59560	7.51510	6.49560	HepG2	NCBP2
CP	ENSG00000047457.9	28059.78910	49030.60740	-0.80520	3.68010	2.03480	HepG2	NKRF
CP	ENSG00000047457.9	22273.19570	37928.96090	-0.76800	11.26720	9.76880	HepG2	NOL12
CP	ENSG00000047457.9	7318.75180	16067.90490	-1.13450	9.65140	7.57770	HepG2	NONO
CP	ENSG00000047457.9	29271.11470	11256.98570	1.37860	11.24690	9.83210	HepG2	NSUN2
CP	ENSG00000047457.9	39699.88260	49903.07410	-0.33000	3.56510	1.73850	HepG2	NUP35
CP	ENSG00000047457.9	15991.69290	26246.58680	-0.71480	10.50710	9.03480	HepG2	PARN
CP	ENSG00000047457.9	27751.88740	36040.55990	-0.37700	7.71130	6.77870	HepG2	PCBP1
CP	ENSG00000047457.9	31133.34170	23650.89350	0.39650	8.60270	7.35090	HepG2	PPIL4
CP	ENSG00000047457.9	19402.29750	41593.42060	-1.10010	4.14580	2.66730	HepG2	PRPF6
CP	ENSG00000047457.9	3966.60540	13507.29100	-1.76780	17.66620	15.88230	HepG2	PRPF8
CP	ENSG00000047457.9	26137.10340	36674.50250	-0.48870	6.09720	5.34770	HepG2	PTBP1
CP	ENSG00000047457.9	8833.99590	36205.68500	-2.03510	122.11150	118.94100	HepG2	PUF60
CP	ENSG00000047457.9	26104.33830	38432.96340	-0.55810	36.89670	35.23470	HepG2	PUM1
CP	ENSG00000047457.9	18064.84980	38405.49300	-1.08810	20.30930	18.59210	HepG2	PUM2
CP	ENSG00000047457.9	18586.97140	33444.56090	-0.84750	59.24880	57.17020	HepG2	PUS1
CP	ENSG00000047457.9	15766.10480	39715.37400	-1.33290	61.17650	58.98480	HepG2	QKI
CP	ENSG00000047457.9	23505.49360	17788.30250	0.40200	3.51330	1.55280	HepG2	RBM14
CP	ENSG00000047457.9	3802.71670	24718.80610	-2.70050	33.69840	32.28190	HepG2	RBM22
CP	ENSG00000047457.9	54061.23310	36045.77270	0.58470	12.63170	11.25510	HepG2	RBM25
CP	ENSG00000047457.9	17983.57550	31508.98880	-0.80910	5.28180	3.20380	HepG2	RBM47
CP	ENSG00000047457.9	9408.49050	29048.74970	-1.62640	15.93560	13.50700	HepG2	RCC2
CP	ENSG00000047457.9	18117.76040	40813.63370	-1.17160	45.02400	43.44050	HepG2	NELFE
CP	ENSG00000047457.9	4118.11350	26372.73390	-2.67900	55.95000	53.85650	HepG2	RPS19
CP	ENSG00000047457.9	11375.89610	32994.21780	-1.53620	12.18920	10.60490	HepG2	RPS2
CP	ENSG00000047457.9	20950.18760	33677.29400	-0.68480	4.80400	3.37550	HepG2	RPS5
CP	ENSG00000047457.9	8547.55880	13361.99440	-0.64460	3.14370	2.31360	HepG2	RRP9
CP	ENSG00000047457.9	28942.47620	23614.19970	0.29340	8.61320	7.56980	HepG2	SAFB2
CP	ENSG00000047457.9	12332.78320	30998.25710	-1.32970	3.82960	2.17980	HepG2	SF1
CP	ENSG00000047457.9	7738.78420	33855.78260	-2.12920	53.03220	50.13520	HepG2	SF3A3
CP	ENSG00000047457.9	24802.24160	12561.30610	0.98140	4.62100	3.72720	HepG2	SF3B1
CP	ENSG00000047457.9	48714.88120	38179.51030	0.35150	10.43880	9.40270	HepG2	SF3B4
CP	ENSG00000047457.9	44526.68880	34713.61650	0.35910	14.00680	12.64010	HepG2	SLBP
CP	ENSG00000047457.9	17651.87990	27537.64470	-0.64160	35.83860	33.97580	HepG2	SMN1
CP	ENSG00000047457.9	26555.16620	16672.60750	0.67140	10.63270	7.87130	HepG2	SRP68
CP	ENSG00000047457.9	2428.54280	39852.52280	-4.03650	243.52130	241.01550	HepG2	SRSF1
CP	ENSG00000047457.9	19933.58920	11296.69110	0.81920	18.62280	17.10750	HepG2	SRSF7
CP	ENSG00000047457.9	46425.41650	32423.33840	0.51780	16.79970	15.64570	HepG2	SRSF9
CP	ENSG00000047457.9	4073.77250	24242.77660	-2.57310	37.23930	35.85950	HepG2	SSB
CP	ENSG00000047457.9	17369.73890	23990.31650	-0.46590	3.69160	2.28340	HepG2	STAU1
CP	ENSG00000047457.9	66385.78150	35686.16740	0.89540	9.93420	7.75260	HepG2	SUB1
CP	ENSG00000047457.9	11224.69200	40654.81570	-1.85680	123.55690	120.69550	HepG2	SUCLG1
CP	ENSG00000047457.9	26843.95630	52194.88870	-0.95930	4.41160	2.72160	HepG2	SUGP2
CP	ENSG00000047457.9	30729.70380	24253.38470	0.34130	4.19780	3.05180	HepG2	SUPT6H
CP	ENSG00000047457.9	3858.99640	17425.63190	-2.17490	28.71500	26.95910	HepG2	SUPV3L1
CP	ENSG00000047457.9	27362.23670	35824.83030	-0.38880	5.24300	4.51230	HepG2	TAF15
CP	ENSG00000047457.9	28567.69100	12380.49230	1.20620	7.02840	5.94570	HepG2	TARDBP
CP	ENSG00000047457.9	18340.89350	50616.87010	-1.46460	7.65970	5.97920	HepG2	TBRG4
CP	ENSG00000047457.9	21298.43990	11680.66800	0.86650	9.59940	7.96500	HepG2	TFIP11
CP	ENSG00000047457.9	37868.07060	32914.07590	0.20220	2.14950	1.41080	HepG2	TIA1
CP	ENSG00000047457.9	3905.24990	25764.25330	-2.72190	247.88470	244.54830	HepG2	TIAL1
CP	ENSG00000047457.9	21753.78140	25996.60450	-0.25710	5.16450	4.44290	HepG2	TRIM56
CP	ENSG00000047457.9	11531.20830	30728.02730	-1.41400	48.27610	45.58330	HepG2	U2AF1
CP	ENSG00000047457.9	17492.07080	32233.31100	-0.88190	2.20890	1.33810	HepG2	U2AF2
CP	ENSG00000047457.9	29728.79970	37437.37390	-0.33260	2.99940	2.12890	HepG2	UBE2L3
CP	ENSG00000047457.9	6818.13160	10294.84120	-0.59450	4.53650	3.56210	HepG2	UCHL5
CP	ENSG00000047457.9	18475.81980	30024.94090	-0.70050	21.31950	19.74240	HepG2	UPF1
CP	ENSG00000047457.9	9860.22300	15960.33880	-0.69480	3.82660	2.63280	HepG2	UPF2
CP	ENSG00000047457.9	21715.29690	30861.15600	-0.50710	2.81920	1.76350	HepG2	UTP18
CP	ENSG00000047457.9	6636.78190	28987.84260	-2.12690	234.23710	230.45330	HepG2	UTP3
CP	ENSG00000047457.9	21351.00140	29328.63010	-0.45800	2.59660	1.54150	HepG2	XPO5
CP	ENSG00000047457.9	17736.70730	41987.84330	-1.24320	5.31020	3.86560	HepG2	XRCC6
CP	ENSG00000047457.9	7091.74730	17153.58020	-1.27430	14.51320	12.87710	HepG2	XRN2
CP	ENSG00000047457.9	13193.86310	19080.14950	-0.53220	4.69870	3.86190	HepG2	ZC3H8
CP	ENSG00000047457.9	49237.09650	33021.63390	0.57620	32.09130	30.75370	HepG2	ZNF622
CP	ENSG00000047457.9	0.53110	15.73200	-4.88860	3.91390	2.10720	K562	CEBPZ
CP	ENSG00000047457.9	0.39330	18.07700	-5.52230	4.61300	3.02610	K562	DDX21
CP	ENSG00000047457.9	24.97600	0.36100	6.11210	7.33970	4.42460	K562	EIF3H
CP	ENSG00000047457.9	0.43990	10.33480	-4.55420	2.12080	1.32540	K562	FTO
CP	ENSG00000047457.9	0.00000	11.42570	-99999.99999	2.88120	2.07060	K562	GPKOW
CP	ENSG00000047457.9	2.66790	90.85660	-5.08980	22.11600	20.14820	K562	MTPAP
CP	ENSG00000047457.9	9.45660	100.95560	-3.41630	17.73380	16.06700	K562	NSUN2
CP	ENSG00000047457.9	1.02230	93.12760	-6.50940	25.90200	22.87680	K562	NUFIP2
CP	ENSG00000047457.9	8.44450	0.00000	99999.99990	2.46250	1.94340	K562	PUS1
CP	ENSG00000047457.9	11.83960	0.00000	99999.99990	3.92350	3.23480	K562	RBM15
CP	ENSG00000047457.9	1.67660	99.60890	-5.89270	27.20140	24.94670	K562	SF3A3
CP	ENSG00000047457.9	0.93230	102.05070	-6.77430	29.84450	27.40200	K562	SRPK2
CP	ENSG00000047457.9	7.07740	107.04490	-3.91880	22.19560	20.40590	K562	UPF1
CP	ENSG00000047457.9	15.52940	0.00000	99999.99990	4.16920	2.47440	K562	UTP18
CP	ENSG00000047457.9	0.00000	91.59570	-99999.99999	28.57910	26.00170	K562	WDR3
CP	ENSG00000047457.9	0.00000	95.24380	-99999.99999	31.62880	29.32980	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CP is not available on ENCORE database.

20 RBPs can affect the splicing of CP :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.05900	0.00017	0.02202	excluded	HepG2	G3BP1
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.27000	0.00000	0.00000	excluded	HepG2	CSTF2
SE	CP	ENSG00000047457.9	chr3	-	148894024	148894199			148891278	148891517	148895626	148895766	-0.05700	0.00051	0.04929	excluded	HepG2	PRPF8
SE	CP	ENSG00000047457.9	chr3	-	148891444	148891517			148883732	148883837	148894036	148894501	-0.16600	0.00000	0.00000	excluded	HepG2	HNRNPM
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.08500	0.00000	0.00001	excluded	HepG2	HNRNPK
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148895626	148895766	-0.54600	0.00001	0.00115	excluded	HepG2	AKAP1
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.10500	0.00000	0.00000	excluded	HepG2	DDX3X
SE	CP	ENSG00000047457.9	chr3	-	148891444	148891517			148883732	148883837	148894036	148894501	-0.08500	0.00008	0.05578	excluded	HepG2	LIN28B
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894501	-0.05500	0.00034	0.02615	excluded	HepG2	NCBP2
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.14000	0.00000	0.00000	excluded	HepG2	MATR3
SE	CP	ENSG00000047457.9	chr3	-	148894036	148894138			148890285	148891517	148895626	148895766	-0.05500	0.00000	0.00001	excluded	HepG2	PCBP2
SE	CP	ENSG00000047457.9	chr3	-	148894024	148894194			148891253	148891517	148895626	148895766	0.45900	0.00000	0.00001	included	HepG2	HNRNPL
SE	CP	ENSG00000047457.9	chr3	-	148903025	148903233			148901252	148901392	148904306	148904519	-0.05200	0.00001	0.00032	excluded	HepG2	SRSF1
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.21900	0.00000	0.00000	excluded	HepG2	SUPV3L1
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.09700	0.00002	0.01272	excluded	HepG2	BCCIP
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.13900	0.00000	0.00000	excluded	HepG2	DDX55
SE	CP	ENSG00000047457.9	chr3	-	148891278	148891517			148883732	148883837	148894036	148894138	-0.18900	0.00000	0.00000	excluded	HepG2	XRN2
SE	CP	ENSG00000047457.9	chr3	-	148894024	148894199			148891253	148891517	148895626	148895766	-0.05700	0.00000	0.00004	excluded	HepG2	HNRNPU
SE	CP	ENSG00000047457.9	chr3	-	148894036	148894138			148890285	148891517	148895626	148895766	-0.05500	0.00000	0.00018	excluded	HepG2	XRCC6
MXE	CP	ENSG00000047457.9	chr3	-	148903025	148903233	148904306	148904519	148901252	148901392	148905838	148905989	0.10500	0.00028	0.00277	1included	HepG2	U2AF2
MXE	CP	ENSG00000047457.9	chr3	-	148926997	148927171	148927953	148928166	148925149	148925404	148930237	148930485	0.07400	0.00450	0.09656	1included	HepG2	HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CP

General Information

Functions

Localization

Domains (AlphaFold: CP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CP is not avaliable on ENCORE database.

26 proteins are bound to CP RNA:

eCLIP assay for CP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CP is not available on ENCORE database.

143 RBPs can affect the gene expression of CP :

The Knockdown/knockout RNA-Seq assay for CP is not available on ENCORE database.

20 RBPs can affect the splicing of CP :

The Knockdown/knockout RNA-Seq assay for CP is not avaliable on ENCORE database.