CENPN

General Information

Gene Name       : CENPN
Gene ID             : ENSG00000166451.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CENPN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CENPNENSG00000166451.1348.2246.9247.57ENCSR000AEF
HepG2CENPNENSG00000166451.1339.1279.8159.47ENCSR985KAT
K562CENPNENSG00000166451.13114.4293.98104.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CENPN is not avaliable on ENCORE database.



Proteins bound to RNA
  • CENPN RNA is bound by 10 proteins.  







eCLIP assay for CENPN is not avaliable on ENCORE database.





10 proteins are bound to CENPN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr168105096781050983+3'-UTR,CDS,intron-Distal4.252727.86788K562YBX3
chr168106280681062893+3'-UTR,intron-Distal5.505579.86388K562PUM2
chr168105095281050967+3'-UTR,CDS,intron-Distal5.7703516.21960K562YBX3
chr168105093581050952+3'-UTR,CDS,intron-Distal5.7452616.21960K562YBX3
chr168104080881040883+5'-UTR,intron-Proximal4.208158.45138K562DDX3X
chr168104553181045610+5'-UTR,CDS,intron-Proximal3.235134.59873K562UCHL5
chr168104553481045558+5'-UTR,CDS,intron-Proximal3.339675.82148K562DDX3X
chr168104087781040956+5'-UTR,intron-Proximal4.710818.69247K562AQR
chr168104774381047783+CDS4.9615318.02530K562YBX3
chr168104569681045715+CDS4.3198416.53321K562YBX3
chr168104774081047743+CDS,intron-Proximal4.6108313.37425K562YBX3
chr168104556981045644+CDS3.814884.79276K562ZNF622
chr168104568181045696+CDS4.4757112.61927K562YBX3
chr168105385581053881+CDS3.406257.42315K562YBX3
chr168105376481053855+CDS4.3790421.98784K562YBX3
chr168105393181054012+intron-Distal,intron-Proximal4.223463.02181K562PRPF8
chr168106301681063072+intron-Distal3.884057.60286K562UPF1
chr168106336481063437+intron-Distal4.268383.18753K562AKAP1
chr168106343981063486+intron-Distal4.584374.85237K562UPF1
chr168106389081063989+intron-Distal5.6662115.50506K562LIN28B
chr168106319681063236+intron-Distal3.337433.85107K562UPF1
chr168106490281064945+intron-Distal4.252893.54010K562UPF1
chr168106391481064031+intron-Distal4.447363.43975HepG2LIN28B
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CENPN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CENPN is not available on ENCORE database.

  • 117 RBPs can affect the levels of CENPN.  








The Knockdown/knockout RNA-Seq assay for CENPN is not available on ENCORE database.





117 RBPs can affect the gene expression of CENPN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CENPNENSG00000166451.9374.69650503.71770-0.426902.528401.79140HepG2AKAP8L
CENPNENSG00000166451.9134.10180386.06010-1.5255015.3758013.68260HepG2ASCC1
CENPNENSG00000166451.9457.62530847.33320-0.8888015.5827014.18640HepG2AUH
CENPNENSG00000166451.9460.02720635.15280-0.465402.245901.40590HepG2BCCIP
CENPNENSG00000166451.9200.11350551.93090-1.4637016.3068014.42620HepG2BCLAF1
CENPNENSG00000166451.9134.88930524.41670-1.9589030.1639028.55200HepG2BOP1
CENPNENSG00000166451.9235.06450520.50640-1.1469010.279508.93440HepG2CALR
CENPNENSG00000166451.9245.72670366.78180-0.577903.091302.27550HepG2CIRBP
CENPNENSG00000166451.9178.69300501.23230-1.4880017.0108015.66490HepG2CKAP4
CENPNENSG00000166451.9185.08540481.44160-1.3792015.4757014.00900HepG2CPSF6
CENPNENSG00000166451.9346.03470468.88740-0.438302.436601.40330HepG2CPSF7
CENPNENSG00000166451.9466.31780782.51440-0.7468010.612309.51290HepG2CELF1
CENPNENSG00000166451.9567.42890841.34890-0.568308.548307.35510HepG2DAZAP1
CENPNENSG00000166451.9240.53980463.72520-0.947008.952807.60900HepG2DDX19B
CENPNENSG00000166451.9223.22700374.61640-0.746903.956503.15820HepG2DDX21
CENPNENSG00000166451.9177.37350446.95900-1.3334013.3217012.04670HepG2DDX3X
CENPNENSG00000166451.9263.79720624.47010-1.2432012.4529010.96060HepG2DDX55
CENPNENSG00000166451.9229.50110546.71280-1.252308.652306.98150HepG2DDX59
CENPNENSG00000166451.9354.25280531.12110-0.584303.553102.41350HepG2DDX5
CENPNENSG00000166451.9124.68080383.91810-1.6226015.2487013.95890HepG2DDX6
CENPNENSG00000166451.9352.24200479.73230-0.445702.927002.23140HepG2DKC1
CENPNENSG00000166451.9287.19680460.49440-0.681102.007301.39830HepG2DNAJC21
CENPNENSG00000166451.9252.88190456.27840-0.851502.799002.14380HepG2DNAJC2
CENPNENSG00000166451.9190.69780344.69280-0.854005.081903.57750HepG2AGO1
CENPNENSG00000166451.961.42490369.09850-2.5871031.2903029.44430HepG2EIF2S1
CENPNENSG00000166451.9204.91990407.91120-0.993207.502606.45010HepG2EIF4A3
CENPNENSG00000166451.9237.75390397.13220-0.740203.763802.96750HepG2EIF4B
CENPNENSG00000166451.9432.25010830.08210-0.9414017.0526015.34570HepG2EIF4G1
CENPNENSG00000166451.9333.54840795.15840-1.2533018.6830016.70570HepG2EIF4G2
CENPNENSG00000166451.9497.69360972.79680-0.9669019.3025017.95310HepG2ETF1
CENPNENSG00000166451.9338.72270489.91080-0.532402.691601.86740HepG2EWSR1
CENPNENSG00000166451.9242.58500356.82560-0.556702.927401.75490HepG2FASTKD2
CENPNENSG00000166451.9361.03780519.79900-0.525803.056701.72530HepG2FKBP4
CENPNENSG00000166451.9218.26660482.26990-1.143705.035703.67220HepG2FTO
CENPNENSG00000166451.9652.48470411.523200.664905.158904.23460HepG2FXR1
CENPNENSG00000166451.9253.44780381.77020-0.591003.218002.50350HepG2G3BP1
CENPNENSG00000166451.9219.70510545.74760-1.3127013.8410012.51530HepG2GPKOW
CENPNENSG00000166451.9291.63140464.90440-0.672802.090701.52000HepG2HNRNPA1
CENPNENSG00000166451.9465.61790773.24600-0.7318010.362308.76750HepG2HNRNPA2B1
CENPNENSG00000166451.9333.17650584.69830-0.8114010.620509.33370HepG2HNRNPF
CENPNENSG00000166451.9477.16480766.39050-0.6836010.659609.41580HepG2HNRNPL
CENPNENSG00000166451.9242.72950520.81730-1.1014010.930409.78130HepG2HNRNPLL
CENPNENSG00000166451.9346.67760575.76240-0.731907.483806.34800HepG2IGF2BP1
CENPNENSG00000166451.9139.54060388.06900-1.4756014.6295013.21500HepG2IGF2BP2
CENPNENSG00000166451.9220.70840364.15430-0.722402.241701.36500HepG2IGF2BP3
CENPNENSG00000166451.9249.34670390.31640-0.646503.137402.06110HepG2KHSRP
CENPNENSG00000166451.9473.44280641.74980-0.438802.217701.48140HepG2LARP4
CENPNENSG00000166451.9305.93090531.17470-0.796004.636003.36220HepG2MTPAP
CENPNENSG00000166451.9284.13870390.70840-0.459502.488501.33750HepG2NAA15
CENPNENSG00000166451.9669.61640834.28240-0.317202.380201.67390HepG2NOL12
CENPNENSG00000166451.9366.87990573.33990-0.644102.693401.61490HepG2NONO
CENPNENSG00000166451.9263.61130461.80710-0.808906.215005.12130HepG2NSUN2
CENPNENSG00000166451.9179.26600377.38890-1.074008.756607.48970HepG2PABPC4
CENPNENSG00000166451.9173.26370483.87410-1.4817013.9513011.89400HepG2PCBP2
CENPNENSG00000166451.9317.37810422.55720-0.412902.685701.92160HepG2PRPF4
CENPNENSG00000166451.9129.17440481.82150-1.8992023.9263021.93210HepG2PRPF8
CENPNENSG00000166451.9339.11010796.40830-1.2318019.7550018.35580HepG2PUF60
CENPNENSG00000166451.9588.31370845.43750-0.523107.454006.57820HepG2PUM1
CENPNENSG00000166451.9549.60070844.81070-0.620206.947205.90180HepG2PUM2
CENPNENSG00000166451.9354.88780510.75430-0.525303.827603.12640HepG2PUS1
CENPNENSG00000166451.9274.10170378.22460-0.464502.789402.16230HepG2QKI
CENPNENSG00000166451.9316.98380537.88670-0.762908.336606.95420HepG2RBM15
CENPNENSG00000166451.9426.94770813.08960-0.9294014.8352013.82930HepG2RBM22
CENPNENSG00000166451.9236.14020343.25000-0.539603.194102.47440HepG2RBM25
CENPNENSG00000166451.9343.57570222.560700.626302.949201.35350HepG2RBM47
CENPNENSG00000166451.9643.19200388.637100.726708.362007.51360HepG2NELFE
CENPNENSG00000166451.9514.73770361.938000.508004.075803.34580HepG2RECQL
CENPNENSG00000166451.9150.75550629.84100-2.0628037.5701035.72720HepG2RPLP0
CENPNENSG00000166451.9191.64540458.71940-1.259209.961008.28640HepG2RPS10
CENPNENSG00000166451.9113.74260290.79640-1.3542012.2026011.02310HepG2RPS19
CENPNENSG00000166451.9311.10740511.71550-0.717905.262604.17930HepG2RPS2
CENPNENSG00000166451.991.10430231.48220-1.345308.400607.03120HepG2RPS3A
CENPNENSG00000166451.9145.65620476.63030-1.7103018.7620017.05480HepG2RRP9
CENPNENSG00000166451.9195.59070291.86020-0.577402.737301.80430HepG2SERBP1
CENPNENSG00000166451.9316.43890474.69380-0.585103.130802.41380HepG2SF3A3
CENPNENSG00000166451.9177.76090515.50400-1.5360020.0579018.34860HepG2SF3B1
CENPNENSG00000166451.9439.20340763.66200-0.7980013.3289011.98710HepG2SLBP
CENPNENSG00000166451.9193.43080573.58940-1.5682014.3582012.59270HepG2SNRNP70
CENPNENSG00000166451.9208.14470918.37510-2.1415056.8889055.37550HepG2SRFBP1
CENPNENSG00000166451.9758.70560379.496400.9994016.8016015.84490HepG2SRSF1
CENPNENSG00000166451.9480.51800786.35510-0.7106010.234609.13290HepG2SRSF5
CENPNENSG00000166451.9216.60820574.44160-1.4071025.7070024.00380HepG2SRSF7
CENPNENSG00000166451.9148.50420308.73030-1.0558010.491709.53810HepG2SRSF9
CENPNENSG00000166451.9598.93700797.40240-0.412903.974403.38390HepG2SSB
CENPNENSG00000166451.9220.64360384.02240-0.799505.015703.40290HepG2STAU1
CENPNENSG00000166451.9282.36580436.35030-0.627902.669101.49010HepG2SUB1
CENPNENSG00000166451.9747.18940894.28700-0.259302.163601.60110HepG2SUCLG1
CENPNENSG00000166451.9116.64020195.80260-0.747302.923501.55760HepG2SUGP2
CENPNENSG00000166451.9264.31840388.22310-0.554603.453802.41270HepG2SUPT6H
CENPNENSG00000166451.9157.78800621.67740-1.9782027.6820025.94860HepG2SUPV3L1
CENPNENSG00000166451.9157.99340507.64630-1.6840022.6314020.93810HepG2TARDBP
CENPNENSG00000166451.9156.87140416.70500-1.4094013.1604011.31690HepG2TFIP11
CENPNENSG00000166451.9103.65180499.29890-2.268209.343508.52010HepG2TIAL1
CENPNENSG00000166451.9238.27450503.56210-1.079503.851003.20810HepG2TRIM56
CENPNENSG00000166451.9616.16440778.08150-0.336602.206101.43180HepG2TUFM
CENPNENSG00000166451.9169.86430477.62100-1.491505.219403.83150HepG2U2AF2
CENPNENSG00000166451.9471.15720823.60310-0.805706.832705.48760HepG2UBE2L3
CENPNENSG00000166451.9204.42580367.26240-0.845205.946204.82290HepG2UCHL5
CENPNENSG00000166451.9141.86200420.97970-1.5693024.2595022.60240HepG2UPF1
CENPNENSG00000166451.9256.29120432.71640-0.755607.401305.78010HepG2UTP18
CENPNENSG00000166451.9121.21110462.99860-1.9335039.4181037.97640HepG2ZNF622
CENPNENSG00000166451.91218.00310908.656000.422603.335702.72370K562AGGF1
CENPNENSG00000166451.91258.43630998.439500.333802.544801.60940K562AKAP8
CENPNENSG00000166451.91271.15680945.488800.426903.793503.02630K562AKAP8L
CENPNENSG00000166451.92263.846101596.466500.503804.870004.13090K562AQR
CENPNENSG00000166451.92675.308502275.754700.233302.165601.30440K562CELF1
CENPNENSG00000166451.9602.08850806.16120-0.421102.778801.86400K562EFTUD2
CENPNENSG00000166451.9646.33290863.82390-0.418502.705601.45610K562EXOSC5
CENPNENSG00000166451.91345.65890994.209200.436603.976402.94870K562FIP1L1
CENPNENSG00000166451.91030.30170779.406200.402504.426403.68550K562FXR1
CENPNENSG00000166451.91164.58560891.385000.385602.070201.47090K562G3BP2
CENPNENSG00000166451.91000.23720791.639000.337303.059401.85820K562GLRX3
CENPNENSG00000166451.9602.28960766.65050-0.348102.289501.56690K562GPKOW
CENPNENSG00000166451.9786.864401076.78280-0.452504.345302.98800K562HNRNPL
CENPNENSG00000166451.91021.088301230.88420-0.269602.307701.49030K562HNRNPU
CENPNENSG00000166451.91672.455701347.877800.311202.313901.58200K562HSPD1
CENPNENSG00000166451.91286.291201003.431100.358202.570801.77840K562KIF1C
CENPNENSG00000166451.9453.22550654.60200-0.530402.983002.00920K562KRR1
CENPNENSG00000166451.91090.67770787.904300.469002.774901.89010K562NAA15
CENPNENSG00000166451.92522.041902024.538100.316902.806501.30860K562NOL12
CENPNENSG00000166451.9655.24750842.85820-0.363202.089601.39360K562POLR2G
CENPNENSG00000166451.9509.21210678.49020-0.414102.610801.73860K562PSIP1
CENPNENSG00000166451.91574.80110937.729100.747809.594508.63230K562PUS1
CENPNENSG00000166451.91305.45160913.623000.514806.802605.89930K562RBM15
CENPNENSG00000166451.91205.48900802.216800.587504.285102.62650K562RRP9
CENPNENSG00000166451.9650.54570912.49290-0.488205.659204.52300K562SF3A3
CENPNENSG00000166451.91112.99970934.865700.251502.480701.58910K562SRPK2
CENPNENSG00000166451.92380.819801891.106900.332103.087401.71720K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CENPN is not available on ENCORE database.





11 RBPs can affect the splicing of CENPN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECENPNENSG00000166451.9chr16+810563598105649281053704810538818105831981058383-0.330000.000000.00000excludedK562SRSF1
SECENPNENSG00000166451.9chr16+810562018105630381053704810538818105831981058383-0.263000.005860.08369excludedK562SF3B4
SECENPNENSG00000166451.9chr16+810562018105630381053704810538818105831981058383-0.254000.002070.05495excludedK562AKAP8L
SECENPNENSG00000166451.9chr16+810562018105630381053704810538818105831981058383-0.188000.000270.00395excludedK562AQR
SECENPNENSG00000166451.9chr16+8105620181056303810537048105388181058319810583830.227000.000400.01903includedK562FXR1
SECENPNENSG00000166451.9chr16+810562018105630381053704810538818105831981058383-0.416000.000000.00000excludedK562PUS1
SECENPNENSG00000166451.9chr16+810562018105630381053704810538818105831981058383-0.378000.000030.00121excludedK562U2AF1
SECENPNENSG00000166451.9chr16+810562018105630381053704810538818105831981058383-0.374000.000130.00355excludedK562U2AF2
SECENPNENSG00000166451.9chr16+810562018105630381053704810538818105831981058383-0.326000.000000.00005excludedK562RBM15
SECENPNENSG00000166451.9chr16+810562018105630381053704810538818105831981058383-0.343000.000000.00003excludedK562AGGF1
A3SSCENPNENSG00000166451.9chr16+8106175181061902810617758106190281060130810602430.056000.000710.00511longerK562AQR
MXECENPNENSG00000166451.9chr16+8105620181056303810583198105838381053704810538818106013081060243-0.317000.000140.054972includedHepG2CSTF2T
MXECENPNENSG00000166451.9chr16+81056201810563038105635981056492810537048105388181058319810583830.390000.000000.000001includedK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CENPN is not avaliable on ENCORE database.