VMP1

General Information

Gene Name : VMP1
Gene ID : ENSG00000062716.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VMP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VMP1	ENSG00000062716.12	96.43	82.43	89.43	ENCSR000AEF
HepG2	VMP1	ENSG00000062716.12	64.66	123.09	93.88	ENCSR985KAT
K562	VMP1	ENSG00000062716.12	89.54	98.50	94.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VMP1 is not avaliable on ENCORE database.

Proteins bound to RNA

VMP1 RNA is bound by 35 proteins.

CanvasJS.com

eCLIP assay for VMP1 is not avaliable on ENCORE database.

35 proteins are bound to VMP1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	57915655	57915668	+	3'-UTR,CDS,intron-Proximal	4.59507	400.00000	HepG2	U2AF2
chr17	57917126	57917184	+	3'-UTR,CDS,intron-Proximal	4.55648	400.00000	HepG2	U2AF2
chr17	57915620	57915642	+	intron-Proximal	4.61774	400.00000	HepG2	U2AF2
chr17	57915668	57915690	+	3'-UTR,CDS,intron-Proximal	4.22642	85.55238	HepG2	U2AF2
chr17	57918383	57918425	+	3'-UTR	5.19363	78.56767	HepG2	DGCR8
chr17	57917100	57917126	+	intron-Proximal	4.76371	73.56141	HepG2	U2AF2
chr17	57918367	57918430	+	3'-UTR	4.01464	63.68715	K562	DROSHA
chr17	57915589	57915620	+	intron-Proximal	4.23658	57.66613	HepG2	U2AF2
chr17	57915297	57915325	+	intron-Distal	4.47537	52.94173	HepG2	HNRNPC
chr17	57918332	57918435	+	3'-UTR	3.91265	51.05626	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 147 entries

eCLIP assay for VMP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VMP1 is not available on ENCORE database.
136 RBPs can affect the levels of VMP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VMP1 is not available on ENCORE database.

136 RBPs can affect the gene expression of VMP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VMP1	ENSG00000062716.6	7415.28790	3680.27660	1.01060	82.59500	80.70350	HepG2	ZNF622
VMP1	ENSG00000062716.6	6487.57600	3230.71100	1.00570	58.98610	56.78210	HepG2	UTP3
VMP1	ENSG00000062716.6	7079.16050	3777.55480	0.90600	50.55700	48.77840	HepG2	SRSF9
VMP1	ENSG00000062716.6	9343.15580	5213.24860	0.84160	35.42030	33.65150	HepG2	CELF1
VMP1	ENSG00000062716.6	7388.96350	3645.17770	1.01930	30.75770	28.56480	HepG2	MSI2
VMP1	ENSG00000062716.6	4491.72120	1920.62590	1.22560	28.43800	26.14370	HepG2	UCHL5
VMP1	ENSG00000062716.6	8836.20830	4895.05150	0.85200	26.91850	24.72050	HepG2	RBM15
VMP1	ENSG00000062716.6	6075.50920	3912.87880	0.63470	23.30490	21.93060	HepG2	ACO1
VMP1	ENSG00000062716.6	5558.68760	2567.47000	1.11430	24.41630	21.04380	K562	HNRNPK
VMP1	ENSG00000062716.6	5088.60200	3346.28320	0.60460	21.97890	20.38030	HepG2	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 161 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VMP1 is not available on ENCORE database.

27 RBPs can affect the splicing of VMP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	VMP1	ENSG00000062716.6	chr17	+	57889030	57889147	57895072	57895134	57886156	57886237	57915655	57915758	-0.17500	0.00000	0.00000	2included	HepG2	FTO
SE	VMP1	ENSG00000062716.6	chr17	+	57814813	57814904			57812698	57812834	57842331	57842499	-0.32000	0.00001	0.00017	excluded	HepG2	U2AF2
MXE	VMP1	ENSG00000062716.6	chr17	+	57889009	57889147	57895072	57895134	57886156	57886237	57915655	57915758	0.08600	0.00001	0.00014	1included	K562	AQR
MXE	VMP1	ENSG00000062716.6	chr17	+	57814813	57814904	57816197	57816308	57812698	57812834	57842331	57842499	-0.08900	0.00001	0.00010	2included	HepG2	U2AF2
MXE	VMP1	ENSG00000062716.6	chr17	+	57808781	57808883	57812698	57812834	57784825	57785109	57814813	57814904	0.15800	0.00001	0.00205	1included	K562	NCBP2
MXE	VMP1	ENSG00000062716.6	chr17	+	57808781	57808883	57812698	57812834	57784825	57785109	57814813	57814904	0.14100	0.00002	0.00148	1included	K562	XRN2
MXE	VMP1	ENSG00000062716.6	chr17	+	57889030	57889147	57895072	57895134	57886156	57886237	57915655	57915758	-0.16300	0.00002	0.00151	2included	HepG2	PCBP1
MXE	VMP1	ENSG00000062716.6	chr17	+	57808781	57808883	57812698	57812834	57784825	57785109	57814813	57814904	0.14300	0.00002	0.00119	1included	K562	SUPV3L1
SE	VMP1	ENSG00000062716.6	chr17	+	57895072	57895134			57889030	57889147	57915655	57915758	-0.07300	0.00003	0.00063	excluded	K562	AQR
MXE	VMP1	ENSG00000062716.6	chr17	+	57808781	57808883	57812698	57812834	57784825	57785109	57814813	57814904	0.10900	0.00003	0.00155	1included	HepG2	DDX55

Showing 1 to 10 of 49 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VMP1

General Information

Functions

Localization

Domains (AlphaFold: VMP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VMP1 is not avaliable on ENCORE database.

35 proteins are bound to VMP1 RNA:

eCLIP assay for VMP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VMP1 is not available on ENCORE database.

136 RBPs can affect the gene expression of VMP1 :

The Knockdown/knockout RNA-Seq assay for VMP1 is not available on ENCORE database.

27 RBPs can affect the splicing of VMP1 :

The Knockdown/knockout RNA-Seq assay for VMP1 is not avaliable on ENCORE database.