HOMER3

General Information

Gene Name       : HOMER3
Gene ID             : ENSG00000051128.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOMER3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOMER3ENSG00000051128.180.240.160.20ENCSR000AEF
HepG2HOMER3ENSG00000051128.1835.0017.8926.45ENCSR985KAT
K562HOMER3ENSG00000051128.183.391.972.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOMER3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOMER3 RNA is bound by 8 proteins.  







eCLIP assay for HOMER3 is not avaliable on ENCORE database.





8 proteins are bound to HOMER3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191904005319040154-3'-UTR,intron-Distal,intron-Proximal3.593194.98444HepG2GRSF1
chr191905192819051998-5'-UTR,intron-Distal,intron-Proximal3.707545.08839HepG2CSTF2T
chr191905184719052013-5'-UTR,intron-Distal,intron-Proximal3.982714.38588HepG2DDX3X
chr191904511119045211-CDS,intron-Distal,intron-Proximal5.559668.25598HepG2PPIG
chr191904212219042218-5'-UTR,CDS,intron-Distal,intron-Proximal3.354965.86107HepG2PPIG
chr191904277919042846-CDS,intron-Distal,intron-Proximal3.223453.05161HepG2PPIG
chr191904926219049314-CDS,intron-Distal,intron-Proximal4.122365.99890HepG2U2AF2
chr191904918919049308-CDS,intron-Distal,intron-Proximal4.033764.28220HepG2GRWD1
chr191904381319043854-CDS,intron-Distal,intron-Proximal4.217414.16554HepG2PPIG
chr191904334519043524-intron-Distal4.333217.59655HepG2DDX59
chr191904314419043342-intron-Distal4.084507.56829HepG2HNRNPK
chr191904334219043431-intron-Distal3.956083.31570HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOMER3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOMER3 is not available on ENCORE database.

  • 79 RBPs can affect the levels of HOMER3.  








The Knockdown/knockout RNA-Seq assay for HOMER3 is not available on ENCORE database.





79 RBPs can affect the gene expression of HOMER3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOMER3ENSG00000051128.14411.88460300.447500.455003.401802.73900HepG2ACO1
HOMER3ENSG00000051128.14481.44110271.731100.825106.169904.64540HepG2AKAP8
HOMER3ENSG00000051128.14396.38400301.895200.392802.058801.38440HepG2AKAP8L
HOMER3ENSG00000051128.14327.89420208.556700.652703.530202.64460HepG2ASCC1
HOMER3ENSG00000051128.14515.92910374.203000.463302.549701.88630HepG2AUH
HOMER3ENSG00000051128.14236.46790140.158800.754502.816901.87060HepG2BCCIP
HOMER3ENSG00000051128.14312.17250216.143900.530302.705602.11300HepG2BOP1
HOMER3ENSG00000051128.14118.44030198.14530-0.742403.108002.29050HepG2CIRBP
HOMER3ENSG00000051128.1494.41400162.95910-0.787402.782701.42370HepG2CSTF2T
HOMER3ENSG00000051128.14412.63130238.785900.789008.178807.18430HepG2CELF1
HOMER3ENSG00000051128.14102.73580171.70020-0.741003.027102.07070HepG2DDX24
HOMER3ENSG00000051128.14292.26730137.812201.084505.868904.79430HepG2DDX55
HOMER3ENSG00000051128.14350.50290207.438800.756604.287803.53210HepG2DDX6
HOMER3ENSG00000051128.14203.99500145.722100.485202.341201.73140HepG2DNAJC2
HOMER3ENSG00000051128.1474.08940220.32840-1.5723011.004409.75600HepG2EIF4A3
HOMER3ENSG00000051128.14374.30210214.549500.802804.056703.23120HepG2EIF4B
HOMER3ENSG00000051128.14333.66440429.66110-0.364802.618802.03080HepG2ETF1
HOMER3ENSG00000051128.14603.82350399.310900.596503.777802.88960HepG2FIP1L1
HOMER3ENSG00000051128.14144.15170276.52190-0.939806.464505.29100HepG2FUBP3
HOMER3ENSG00000051128.14343.36150222.347900.626803.334402.57800HepG2FXR1
HOMER3ENSG00000051128.14357.49860206.236200.793505.059004.17170HepG2G3BP1
HOMER3ENSG00000051128.14264.06300170.475000.631202.718101.36440HepG2HNRNPA0
HOMER3ENSG00000051128.1494.78860148.42760-0.647002.013501.45250HepG2HNRNPA1
HOMER3ENSG00000051128.14407.93660208.889000.965507.701006.58090HepG2HNRNPK
HOMER3ENSG00000051128.14142.81900214.67490-0.588002.239801.66740HepG2HNRNPLL
HOMER3ENSG00000051128.14187.77590271.37840-0.531302.633301.44750HepG2NAA15
HOMER3ENSG00000051128.14370.98760228.925600.696402.377901.78830HepG2NCBP2
HOMER3ENSG00000051128.14266.32110126.582301.073004.465003.05470HepG2NONO
HOMER3ENSG00000051128.14225.00320146.281100.621103.369202.56200HepG2PPIL4
HOMER3ENSG00000051128.14398.35470257.970900.626706.334205.51340HepG2PUM1
HOMER3ENSG00000051128.14420.69870257.769700.706604.282303.45850HepG2PUM2
HOMER3ENSG00000051128.14238.75470306.03160-0.358201.906401.37570HepG2PUS1
HOMER3ENSG00000051128.14184.98040265.45430-0.521102.011801.46630HepG2QKI
HOMER3ENSG00000051128.14782.27310359.111801.1231020.0109018.87860HepG2RBM22
HOMER3ENSG00000051128.14148.78690240.90380-0.695203.105902.39560HepG2RBM25
HOMER3ENSG00000051128.14289.50380179.117000.692602.799901.80270HepG2RBM27
HOMER3ENSG00000051128.14399.99400272.755900.552303.713103.10440HepG2NELFE
HOMER3ENSG00000051128.14298.02880152.871500.963003.750203.04490HepG2RPS19
HOMER3ENSG00000051128.14308.25720165.176600.900004.043003.08360HepG2RPS2
HOMER3ENSG00000051128.14278.32020168.627500.722803.344102.15970HepG2RPS5
HOMER3ENSG00000051128.14187.57580105.123200.835303.086802.26290HepG2RRP9
HOMER3ENSG00000051128.14255.89400107.884601.246003.383801.84580HepG2SF1
HOMER3ENSG00000051128.14365.76850104.830501.802803.764802.01080HepG2SFPQ
HOMER3ENSG00000051128.14284.32280170.324700.739105.507004.65090HepG2SMN1
HOMER3ENSG00000051128.14272.88170151.769000.846303.282902.23020HepG2SMNDC1
HOMER3ENSG00000051128.14102.35430236.43190-1.207905.896804.74980HepG2SNRNP70
HOMER3ENSG00000051128.14553.79580405.593900.449203.754203.19760HepG2SRFBP1
HOMER3ENSG00000051128.14146.79310266.34230-0.859505.786005.16450HepG2SRSF1
HOMER3ENSG00000051128.14440.69780239.947100.877008.965707.92450HepG2SRSF5
HOMER3ENSG00000051128.14220.85610352.13480-0.673005.579704.90060HepG2SSB
HOMER3ENSG00000051128.14295.72170176.130300.747504.150402.77810HepG2STIP1
HOMER3ENSG00000051128.14423.02790272.865000.632506.341405.46950HepG2SUCLG1
HOMER3ENSG00000051128.14211.01870137.179100.621201.902801.32790HepG2SUPV3L1
HOMER3ENSG00000051128.14148.23150239.36600-0.691403.955903.30440HepG2TAF15
HOMER3ENSG00000051128.14242.7896091.939801.400809.585807.95390HepG2TFIP11
HOMER3ENSG00000051128.14284.10870159.361900.834005.861805.18510HepG2TIAL1
HOMER3ENSG00000051128.14325.86770160.788201.0190010.335709.35090HepG2TRIM56
HOMER3ENSG00000051128.14440.83520237.429700.892608.741807.03630HepG2TUFM
HOMER3ENSG00000051128.14316.33960112.130801.496204.628503.33120HepG2U2AF2
HOMER3ENSG00000051128.14165.8083081.028601.032904.909203.89120HepG2UCHL5
HOMER3ENSG00000051128.14364.72510271.615100.425102.754602.05600HepG2UPF1
HOMER3ENSG00000051128.14154.17520262.23520-0.766304.811904.05820HepG2UTP3
HOMER3ENSG00000051128.14216.36920135.038200.680002.379101.70210HepG2XRN2
HOMER3ENSG00000051128.14120.03330215.37180-0.843405.284704.40640HepG2ZC3H8
HOMER3ENSG00000051128.14173.55700298.72600-0.783406.601605.85160HepG2ZNF622
HOMER3ENSG00000051128.14200.0601071.408001.4862011.6367010.56720K562AGGF1
HOMER3ENSG00000051128.14148.5729078.484100.920604.493003.16710K562AKAP8
HOMER3ENSG00000051128.14180.9551074.307601.284003.014102.33130K562AKAP8L
HOMER3ENSG00000051128.14137.3392077.974600.816603.786602.70490K562ATP5C1
HOMER3ENSG00000051128.1459.7712028.365201.075202.412901.51800K562BCLAF1
HOMER3ENSG00000051128.1451.9535021.519201.271502.453101.46610K562CSTF2
HOMER3ENSG00000051128.1490.3305048.961000.883502.738301.44170K562DDX6
HOMER3ENSG00000051128.1422.0476052.46580-1.250802.767202.16220K562FXR1
HOMER3ENSG00000051128.142.2469014.21430-2.661302.168301.55340K562G3BP2
HOMER3ENSG00000051128.14116.1719035.013101.730206.919905.71640K562GRSF1
HOMER3ENSG00000051128.1484.0542041.957101.002302.728901.93890K562HSPD1
HOMER3ENSG00000051128.1457.1731028.453201.006602.251501.48960K562MAGOH
HOMER3ENSG00000051128.14174.5417088.327100.982504.711103.46100K562MBNL1
HOMER3ENSG00000051128.14110.3951057.903000.930902.285101.40250K562PABPN1
HOMER3ENSG00000051128.1465.1885035.147300.891102.158601.43840K562PPIG
HOMER3ENSG00000051128.1486.4789034.134701.341004.238203.08390K562PSIP1
HOMER3ENSG00000051128.14164.9067076.225401.113204.959503.66270K562PUM2
HOMER3ENSG00000051128.14129.6606071.798000.852603.565502.90590K562RBM15
HOMER3ENSG00000051128.1457.5388025.194801.191302.261101.52620K562RPS19
HOMER3ENSG00000051128.14123.0358064.621500.928902.576201.33840K562SFPQ
HOMER3ENSG00000051128.1461.9726029.547401.068502.264301.35770K562SRFBP1
HOMER3ENSG00000051128.1459.3522025.616701.212102.581101.57290K562SRSF5
HOMER3ENSG00000051128.1466.5953026.457401.331603.581102.63170K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOMER3 is not available on ENCORE database.





1 RBPs can affect the splicing of HOMER3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSHOMER3ENSG00000051128.14chr19-1904920719049424190492071904929319049536190496930.137000.000000.00006longerHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HOMER3 is not avaliable on ENCORE database.