ST6GALNAC1

General Information

Gene Name       : ST6GALNAC1
Gene ID             : ENSG00000070526.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ST6GALNAC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ST6GALNAC1ENSG00000070526.140.000.000.00ENCSR000AEF
HepG2ST6GALNAC1ENSG00000070526.140.000.000.00ENCSR985KAT
K562ST6GALNAC1ENSG00000070526.1445.0746.0045.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ST6GALNAC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ST6GALNAC1 RNA is bound by 6 proteins.  







eCLIP assay for ST6GALNAC1 is not avaliable on ENCORE database.





6 proteins are bound to ST6GALNAC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177462546974625520-3'-UTR,CDS,intron-Distal,intron-Proximal3.289646.73886K562ZNF622
chr177462345174623517-3'-UTR,CDS,intron-Distal,intron-Proximal3.151926.35796K562AQR
chr177462159574621639-3'-UTR,CDS,intron-Distal,intron-Proximal3.992114.98250K562AQR
chr177462322674623321-3'-UTR,CDS,intron-Distal,intron-Proximal3.528515.26861K562DDX24
chr177462268874622737-3'-UTR,CDS,intron-Distal,intron-Proximal4.360598.29266K562AQR
chr177462174574621808-intron-Distal,intron-Proximal4.801196.64445K562BUD13
chr177462262874622650-intron-Distal,intron-Proximal4.070803.04254K562UCHL5
chr177462485874624918-intron-Distal5.222859.33028K562RBM15
chr177462470474624756-intron-Distal3.480144.24159K562RBM15
chr177462503274625087-intron-Distal,intron-Proximal4.1262511.09862K562RBM15
chr177462185074621901-intron-Distal,intron-Proximal4.204125.97994K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ST6GALNAC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ST6GALNAC1 is not available on ENCORE database.

  • 61 RBPs can affect the levels of ST6GALNAC1.  








The Knockdown/knockout RNA-Seq assay for ST6GALNAC1 is not available on ENCORE database.





61 RBPs can affect the gene expression of ST6GALNAC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ST6GALNAC1ENSG00000070526.1010.035000.0000099999.999902.614401.87190HepG2CNOT7
ST6GALNAC1ENSG00000070526.101065.562601457.46720-0.451804.213202.68050K562ABCF1
ST6GALNAC1ENSG00000070526.101898.482403108.28940-0.7113021.6184020.14040K562AGGF1
ST6GALNAC1ENSG00000070526.102601.221303415.55210-0.392904.132602.87710K562AKAP8
ST6GALNAC1ENSG00000070526.101659.839903234.31890-0.9624020.9567018.82110K562AKAP8L
ST6GALNAC1ENSG00000070526.10835.088101453.29000-0.799309.577008.59050K562AQR
ST6GALNAC1ENSG00000070526.102303.699203393.58470-0.5589011.559709.50680K562ATP5C1
ST6GALNAC1ENSG00000070526.10691.700301119.19700-0.694204.009902.95730K562BOP1
ST6GALNAC1ENSG00000070526.102463.430003714.56690-0.5925011.254208.89090K562CCDC124
ST6GALNAC1ENSG00000070526.101146.436801542.73090-0.428303.958202.62240K562CPEB4
ST6GALNAC1ENSG00000070526.10620.83390825.07220-0.410303.467702.28650K562DDX3X
ST6GALNAC1ENSG00000070526.101195.122501595.96470-0.417304.012203.24680K562DDX47
ST6GALNAC1ENSG00000070526.101050.32630836.486100.328302.996701.61960K562DDX6
ST6GALNAC1ENSG00000070526.102372.552503480.34050-0.5528012.2426010.13060K562DKC1
ST6GALNAC1ENSG00000070526.101294.040901071.963100.271502.596601.89510K562EIF2S2
ST6GALNAC1ENSG00000070526.10575.00270879.07820-0.612404.668603.64590K562EIF3G
ST6GALNAC1ENSG00000070526.101314.08620861.952000.608307.058205.75370K562EIF4A3
ST6GALNAC1ENSG00000070526.10960.64040776.191700.307502.528301.44160K562EIF4B
ST6GALNAC1ENSG00000070526.101538.322201796.25220-0.223602.400701.52130K562EIF4G2
ST6GALNAC1ENSG00000070526.10751.189801026.39210-0.450303.306102.29990K562FTO
ST6GALNAC1ENSG00000070526.10568.33220896.38610-0.657409.501208.45980K562FXR1
ST6GALNAC1ENSG00000070526.10406.41730618.84490-0.606602.800602.08710K562G3BP2
ST6GALNAC1ENSG00000070526.101097.14330810.635100.436502.966201.48710K562GEMIN5
ST6GALNAC1ENSG00000070526.101620.526901244.904700.380303.893402.62180K562HNRNPA1
ST6GALNAC1ENSG00000070526.10662.049901049.91220-0.665308.149306.10630K562HNRNPF
ST6GALNAC1ENSG00000070526.101921.392601378.593500.478907.327005.87420K562HNRNPU
ST6GALNAC1ENSG00000070526.102010.911001420.375100.501505.248004.16900K562HSPD1
ST6GALNAC1ENSG00000070526.101575.102002069.30980-0.393705.588602.93360K562CCAR2
ST6GALNAC1ENSG00000070526.102115.479603432.41050-0.6982010.700808.77270K562KIF1C
ST6GALNAC1ENSG00000070526.102325.963203285.66980-0.498406.168704.32070K562MAK16
ST6GALNAC1ENSG00000070526.102599.933503845.16820-0.564609.156007.31320K562MBNL1
ST6GALNAC1ENSG00000070526.10779.390701108.94930-0.508805.014803.81640K562METAP2
ST6GALNAC1ENSG00000070526.101536.242202695.18530-0.811008.726906.81220K562NAA15
ST6GALNAC1ENSG00000070526.101727.933901512.363400.192102.412201.71040K562NSUN2
ST6GALNAC1ENSG00000070526.101389.463002147.75600-0.628302.897901.87800K562PABPN1
ST6GALNAC1ENSG00000070526.101084.624101448.05790-0.416903.047002.17450K562PCBP3
ST6GALNAC1ENSG00000070526.10817.293001110.69470-0.442504.664903.62380K562POLR2G
ST6GALNAC1ENSG00000070526.10468.81580786.80410-0.747007.500206.26510K562PRPF8
ST6GALNAC1ENSG00000070526.101403.615301053.993300.413203.544602.50280K562PSIP1
ST6GALNAC1ENSG00000070526.101286.031701959.78020-0.607806.389005.15000K562PUF60
ST6GALNAC1ENSG00000070526.101611.634902042.41110-0.341704.924203.63090K562PUM2
ST6GALNAC1ENSG00000070526.101353.238803207.53630-1.2450029.0431027.26700K562PUS1
ST6GALNAC1ENSG00000070526.10337.40710590.41440-0.807204.499902.63110K562RAVER1
ST6GALNAC1ENSG00000070526.101701.523503125.27800-0.8772025.0536023.19270K562RBM15
ST6GALNAC1ENSG00000070526.10563.64060865.68190-0.619105.342703.15380K562RPS10
ST6GALNAC1ENSG00000070526.10343.95370801.27860-1.2201015.2763013.33250K562RPS19
ST6GALNAC1ENSG00000070526.101113.040701964.36050-0.819603.569202.14800K562SF1
ST6GALNAC1ENSG00000070526.101160.179101492.39160-0.363304.424403.41100K562SF3A3
ST6GALNAC1ENSG00000070526.102828.683501545.766300.871705.598703.07370K562SMN1
ST6GALNAC1ENSG00000070526.10535.59390969.22150-0.855703.877203.04570K562SRSF1
ST6GALNAC1ENSG00000070526.102013.441901325.057600.603505.179803.65910K562SRSF4
ST6GALNAC1ENSG00000070526.101254.31980915.612200.454002.430301.45530K562SRSF5
ST6GALNAC1ENSG00000070526.101293.30520980.693000.399102.219701.58210K562TARDBP
ST6GALNAC1ENSG00000070526.101394.34090946.047500.559502.558301.77510K562TIA1
ST6GALNAC1ENSG00000070526.101336.291101077.278100.310702.231601.39490K562TRIM56
ST6GALNAC1ENSG00000070526.10393.42050599.66560-0.608104.165302.76540K562U2AF1
ST6GALNAC1ENSG00000070526.10404.94940619.38820-0.613106.102004.91490K562U2AF2
ST6GALNAC1ENSG00000070526.101874.542401603.595000.225102.627601.92770K562UPF1
ST6GALNAC1ENSG00000070526.101957.976203252.12840-0.732004.217702.50640K562UTP18
ST6GALNAC1ENSG00000070526.101672.293801372.139100.285302.435001.61170K562WDR3
ST6GALNAC1ENSG00000070526.101224.222501426.91010-0.221002.298201.52060K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ST6GALNAC1 is not available on ENCORE database.





11 RBPs can affect the splicing of ST6GALNAC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEST6GALNAC1ENSG00000070526.10chr17-7463368174633818746250937462579374639589746398680.203000.000230.03970includedK562MATR3
SEST6GALNAC1ENSG00000070526.10chr17-7463368174633818746250937462579374639589746398680.111000.002530.06376includedK562AKAP8L
SEST6GALNAC1ENSG00000070526.10chr17-746223707462247474622087746221777462273274622871-0.300000.000010.00654excludedK562PCBP1
SEST6GALNAC1ENSG00000070526.10chr17-746223707462247474622087746221777462273274622871-0.231000.000090.00163excludedK562AQR
SEST6GALNAC1ENSG00000070526.10chr17-746223707462247474622087746221777462273274622871-0.251000.001420.09443excludedK562SUPV3L1
SEST6GALNAC1ENSG00000070526.10chr17-7463368174633818746250937462579374639589746398680.212000.000000.00001includedK562PUS1
SEST6GALNAC1ENSG00000070526.10chr17-746336817463381874625093746257937463958974639868-0.158000.001720.07576excludedK562EFTUD2
SEST6GALNAC1ENSG00000070526.10chr17-746223707462247474622087746221777462273274622871-0.382000.000000.00050excludedK562EFTUD2
SEST6GALNAC1ENSG00000070526.10chr17-7463368174633818746250937462579374639589746398680.053000.000600.08816includedK562FXR2
SEST6GALNAC1ENSG00000070526.10chr17-746223707462247474622087746221777462273274622871-0.296000.000440.01011excludedK562U2AF2
SEST6GALNAC1ENSG00000070526.10chr17-7463368174633818746250937462579374639589746398680.664000.000000.00000includedK562HNRNPC
SEST6GALNAC1ENSG00000070526.10chr17-746223707462247474622087746221777462273274622871-0.579000.000000.00000excludedK562HNRNPC
MXEST6GALNAC1ENSG00000070526.10chr17-74622370746224747462267474622871746220877462217774623148746233200.135000.010830.067511includedK562AQR
MXEST6GALNAC1ENSG00000070526.10chr17-74622370746224747462273274622871746220877462217774623148746233200.132000.002110.017381includedK562AQR
MXEST6GALNAC1ENSG00000070526.10chr17-74622370746224747462273274622871746220877462217774623148746233200.254000.000000.000221includedK562EFTUD2
MXEST6GALNAC1ENSG00000070526.10chr17-74622370746224747462273274622871746220877462217774623148746233200.180000.000150.068091includedK562CSTF2T
MXEST6GALNAC1ENSG00000070526.10chr17-74622370746224747462273274622871746220877462217774623148746233200.415000.000000.000001includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ST6GALNAC1 is not avaliable on ENCORE database.