CSTF2T      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-97BG293LV06-98
idx00
TRCN#_or_BGC#TRCN0000145349TRCN0000145349
shRNA_or_gRNA_sequenceGCGTCTGTTCACTTTAAGTTACTCGAGTAACTTAAAGTGAACAGACGCGCGTCTGTTCACTTTAAGTTACTCGAGTAACTTAAAGTGAACAGACGC
PAM
NameCSTF2TCSTF2T
Sample_IDBG293LV06-97BG293LV06-98
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameCSTF2TCSTF2T
qPCR_result53.458.9
Ave_qPCR56.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1018410185




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-97BG293LV06-98
Sample_IDBG293LV06-97BG293LV06-98
Sample Name
Sample NameCSTF2T-BG293LV06-97BCSTF2T-BG293LV06-98B
RBPCSTF2TCSTF2T
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1353413535




Library-Prep Information
BG293LV06-97BG293LV06-98
Sample #9798
Sample NameCSTF2T-BG293LV06-97BCSTF2T-BG293LV06-98B
Sample_Name_Alias
Index Well PositionA06B06
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp301285
Peak_Molarity99.4085.10
libSampleQC_DNA_WellDNA_Library_set72/set1/A6.pngDNA_Library_set72/set1/B6.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set72/set1/A6.pngRNA_Library_set72/set1/B6.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-97BG293LV06-98
RBPCSTF2TCSTF2T
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45224523




Sequencing Information
BG293LV06-97BG293LV06-98
Sample_IDBG293LV06-97BG293LV06-98
Sample NameCSTF2T-BG293LV06-97BCSTF2T-BG293LV06-98B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads22,746,32624,159,084
total_aligned_reads21,105,37822,470,968
unique_aligned_reads19,732,16821,060,478
percent_uniqueAligned0.867490.87174
correlation_replicates0.9842140.984214
spikein_reads94,042108,718
percent_spikeins0.004130.00450
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30913092




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database