CYBRD1

General Information

Gene Name       : CYBRD1
Gene ID             : ENSG00000071967.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CYBRD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CYBRD1ENSG00000071967.1125.4020.6623.03ENCSR000AEF
HepG2CYBRD1ENSG00000071967.110.800.480.64ENCSR985KAT
K562CYBRD1ENSG00000071967.1110.8010.6610.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CYBRD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CYBRD1 RNA is bound by 34 proteins.  







eCLIP assay for CYBRD1 is not avaliable on ENCORE database.





34 proteins are bound to CYBRD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2172411570172411619+3'-UTR3.864343.46958K562YBX3
chr2172379019172379182+5'-UTR,CDS,intron-Distal3.893737.50590K562DDX3X
chr2172379533172379594+5'-UTR,intron-Distal4.026618.83057K562NONO
chr2172379522172379600+5'-UTR,intron-Distal3.379524.30647K562FUS
chr2172379716172379771+5'-UTR,CDS,intron-Distal4.085006.77154K562NONO
chr2172379706172379795+5'-UTR,CDS,intron-Distal3.113578.56589K562CSTF2T
chr2172379549172379594+5'-UTR,intron-Distal4.822125.55667K562EWSR1
chr2172379555172379598+5'-UTR,intron-Distal4.805185.66249K562TIA1
chr2172379558172379607+5'-UTR,intron-Distal4.255547.13178K562CSTF2T
chr2172379179172379218+CDS,intron-Distal3.345544.87483K562CSTF2T
chr2172398160172398260+CDS,intron-Distal3.068387.19068K562YBX3
chr2172379758172379883+CDS,intron-Distal,intron-Proximal3.419568.08360K562FUS
chr2172379815172379911+CDS,intron-Distal,intron-Proximal4.3794215.53974K562CSTF2T
chr2172379135172379225+CDS,intron-Distal4.5071911.74022K562NONO
chr2172379815172379868+CDS,intron-Distal,intron-Proximal3.281274.84495K562EWSR1
chr2172379815172379879+CDS,intron-Distal,intron-Proximal3.496189.70675K562NONO
chr2172398097172398171+CDS,intron-Distal3.831893.05298K562GRWD1
chr2172379247172379255+CDS,intron-Distal,intron-Proximal3.481345.34337K562AQR
chr2172379239172379335+CDS,intron-Distal,intron-Proximal3.5872413.64687K562DROSHA
chr2172409912172410007+CDS4.955824.77152K562IGF2BP1
chr2172398092172398160+CDS,intron-Distal,intron-Proximal4.194899.22606K562YBX3
chr2172379249172379338+intron-Distal,intron-Proximal5.0473425.30617K562CSTF2T
chr2172397294172397340+intron-Distal,intron-Proximal3.184506.31501K562SF3B4
chr2172379420172379450+intron-Distal3.761704.93968K562DDX52
chr2172400608172400715+intron-Distal4.370884.96658K562KHSRP
chr2172379477172379573+intron-Distal4.1078031.54441K562GEMIN5
chr2172379470172379534+intron-Distal3.127514.99210K562DDX51
chr2172379417172379464+intron-Distal3.397695.20317K562NONO
chr2172397452172397530+intron-Distal3.226148.40629K562XRCC6
chr2172384962172385045+intron-Distal3.530668.52806K562MATR3
chr2172379272172379334+intron-Distal,intron-Proximal5.7345011.98114K562NONO
chr2172379945172380016+intron-Distal5.170419.55926K562NONO
chr2172379405172379437+intron-Distal4.536183.44348K562DDX6
chr2172380038172380124+intron-Distal4.7057512.93967K562NONO
chr2172379462172379497+intron-Distal3.377713.03347K562NCBP2
chr2172385088172385151+intron-Distal5.607338.93487K562PTBP1
chr2172379471172379558+intron-Distal3.7894515.17397K562CSTF2T
chr2172379407172379475+intron-Distal3.428103.17151K562UCHL5
chr2172379868172379948+intron-Distal,intron-Proximal4.248706.37070K562EWSR1
chr2172385172172385368+intron-Distal3.508864.57253K562HNRNPK
chr2172383514172383627+intron-Distal3.601615.85304K562KHDRBS1
chr2172382858172382957+intron-Distal4.2168015.42749K562PCBP1
chr2172379401172379488+intron-Distal5.132067.20890K562GTF2F1
chr2172385045172385149+intron-Distal5.4076831.68313K562MATR3
chr2172379263172379327+intron-Distal,intron-Proximal3.674266.32781K562PHF6
chr2172379464172379533+intron-Distal5.278517.60866K562NONO
chr2172380236172380293+intron-Distal3.906665.85821K562NONO
chr2172379404172379564+intron-Distal3.359874.65089K562XRN2
chr2172379466172379583+intron-Distal3.572754.41255K562SMNDC1
chr2172379255172379294+intron-Distal,intron-Proximal3.404326.21987K562AQR
chr2172379264172379330+intron-Distal,intron-Proximal3.205894.74182K562EWSR1
chr2172379401172379471+intron-Distal3.7830512.53493K562CSTF2T
chr2172384385172384456+intron-Distal3.305567.44978K562MATR3
chr2172379411172379477+intron-Distal3.5657010.18199K562GEMIN5
chr2172380189172380225+intron-Distal3.555305.16186K562NONO
chr2172379413172379522+intron-Distal3.335205.60791K562FUS
chr2172393659172393738+intron-Distal4.054686.42186K562TARDBP
chr2172389396172389474+intron-Distal3.851255.14628K562TARDBP
chr2172379489172379549+intron-Distal4.519799.43936K562EWSR1
chr2172379252172379313+intron-Distal,intron-Proximal3.524574.79829K562EFTUD2
chr2172383447172383514+intron-Distal3.713953.39089K562KHDRBS1
chr2172385385172385436+intron-Distal3.443305.68494K562MATR3
chr2172379402172379571+intron-Distal3.7569024.88346K562DROSHA
chr2172389915172390025+intron-Distal3.114103.90949K562HNRNPL
chr2172382857172382979+intron-Distal3.393084.93942K562PTBP1
chr2172397128172397209+intron-Distal3.029754.64757K562KHSRP
chr2172379266172379324+intron-Distal,intron-Proximal3.562518.28542K562FASTKD2
chr2172397950172398001+intron-Distal,intron-Proximal4.811915.40008K562SF3B4
chr2172384903172384962+intron-Distal3.212056.58022K562MATR3
chr2172393700172393754+intron-Distal3.741184.45240K562EIF4G2
chr2172379506172379527+intron-Distal3.969214.98333K562DDX52
chr2172379879172379944+intron-Distal,intron-Proximal5.2561810.27176K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CYBRD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CYBRD1 is not available on ENCORE database.

  • 63 RBPs can affect the levels of CYBRD1.  








The Knockdown/knockout RNA-Seq assay for CYBRD1 is not available on ENCORE database.





63 RBPs can affect the gene expression of CYBRD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CYBRD1ENSG00000071967.772.4572027.839301.379903.175702.61060HepG2AKAP1
CYBRD1ENSG00000071967.751.8700020.235801.357903.159902.34650HepG2AKAP8L
CYBRD1ENSG00000071967.7109.2811023.035602.2460010.190108.75000HepG2ASCC1
CYBRD1ENSG00000071967.782.3194028.865401.511804.388403.14520HepG2CCAR1
CYBRD1ENSG00000071967.744.8067020.137001.153802.261501.65110HepG2CKAP4
CYBRD1ENSG00000071967.771.9959026.670001.432603.700902.98730HepG2DDX3X
CYBRD1ENSG00000071967.771.7754032.888201.125802.952002.16420HepG2NOL12
CYBRD1ENSG00000071967.766.4485022.427201.566904.866004.09650HepG2PCBP1
CYBRD1ENSG00000071967.761.6687022.824701.433803.897403.27290HepG2PTBP1
CYBRD1ENSG00000071967.7115.1072033.295801.789508.204607.07590HepG2PUM2
CYBRD1ENSG00000071967.755.5821015.224701.868102.935201.53170HepG2SF1
CYBRD1ENSG00000071967.752.7867023.755801.151802.369501.81670HepG2SF3B4
CYBRD1ENSG00000071967.766.7908024.799101.429303.792603.26100HepG2SRSF1
CYBRD1ENSG00000071967.768.2995035.246200.954302.124301.56570HepG2SUCLG1
CYBRD1ENSG00000071967.757.4296026.019101.142102.813502.24630HepG2TRIM56
CYBRD1ENSG00000071967.710.9419030.65850-1.486402.114101.35900HepG2TUFM
CYBRD1ENSG00000071967.75.3340017.90840-1.747401.797401.33090HepG2ZNF622
CYBRD1ENSG00000071967.7395.25410644.76510-0.706006.724004.83170K562AARS
CYBRD1ENSG00000071967.71350.597101127.793500.260002.615002.05980K562AGGF1
CYBRD1ENSG00000071967.71430.528901173.517300.285602.112601.53840K562AKAP8L
CYBRD1ENSG00000071967.71699.082301191.919200.511405.112204.35720K562AQR
CYBRD1ENSG00000071967.7923.82340704.275900.391403.320101.65590K562CEBPZ
CYBRD1ENSG00000071967.7986.099001203.48320-0.287402.452801.41530K562CPEB4
CYBRD1ENSG00000071967.7945.74590666.570000.504604.087403.13520K562CPSF6
CYBRD1ENSG00000071967.7396.32660527.52630-0.412602.609201.58560K562CSTF2
CYBRD1ENSG00000071967.71110.55690809.499400.456105.263603.55570K562DDX21
CYBRD1ENSG00000071967.7478.40600609.81830-0.350102.678201.38220K562DDX27
CYBRD1ENSG00000071967.71061.880501245.28790-0.229901.996201.42650K562DDX47
CYBRD1ENSG00000071967.7470.73940820.95760-0.8024010.288509.03680K562EIF2S2
CYBRD1ENSG00000071967.7267.85440410.68950-0.616602.507501.55360K562EIF3A
CYBRD1ENSG00000071967.7327.66970600.12570-0.8730010.772309.19650K562EIF3G
CYBRD1ENSG00000071967.7531.65050770.16520-0.534705.931105.09440K562FXR1
CYBRD1ENSG00000071967.71086.37250819.785100.406102.254801.62530K562G3BP2
CYBRD1ENSG00000071967.7430.70410601.89110-0.482802.924701.45700K562GEMIN5
CYBRD1ENSG00000071967.7826.135101094.09040-0.405303.346202.51850K562GRSF1
CYBRD1ENSG00000071967.7479.57270629.91080-0.393402.615601.50750K562HNRNPF
CYBRD1ENSG00000071967.7619.08350855.89640-0.467303.323701.95440K562HNRNPK
CYBRD1ENSG00000071967.7909.074001125.40740-0.308002.331701.37160K562HNRNPL
CYBRD1ENSG00000071967.7498.73820656.20420-0.395902.155601.33880K562HNRNPM
CYBRD1ENSG00000071967.7669.31450871.37140-0.380602.910901.68340K562IGF2BP3
CYBRD1ENSG00000071967.71676.519001245.405700.428804.412003.33730K562KIF1C
CYBRD1ENSG00000071967.7810.49030543.482000.576503.625602.54070K562KRR1
CYBRD1ENSG00000071967.7524.51770715.52230-0.448002.911901.41550K562LIN28B
CYBRD1ENSG00000071967.7695.46090898.76030-0.370002.994202.03050K562MATR3
CYBRD1ENSG00000071967.7657.34420823.03450-0.324302.960602.12490K562MTPAP
CYBRD1ENSG00000071967.7616.59230801.31490-0.378102.673301.71100K562PCBP2
CYBRD1ENSG00000071967.71156.69840818.390600.499103.841002.86140K562PCBP3
CYBRD1ENSG00000071967.7818.32950627.713600.382503.117302.26410K562POLR2G
CYBRD1ENSG00000071967.7392.81000584.21230-0.572703.873702.98770K562PRPF8
CYBRD1ENSG00000071967.7455.46150632.37940-0.473503.080002.12030K562PSIP1
CYBRD1ENSG00000071967.7294.14830874.90480-1.5726035.1547032.89450K562PTBP1
CYBRD1ENSG00000071967.71428.865001133.957900.333403.446102.79620K562RBM15
CYBRD1ENSG00000071967.7622.66700839.10620-0.430403.356602.42600K562RBM22
CYBRD1ENSG00000071967.7606.20120817.83300-0.432003.015101.54240K562RBM34
CYBRD1ENSG00000071967.7636.29630882.98370-0.472703.735402.44320K562NELFE
CYBRD1ENSG00000071967.7366.23650595.11140-0.700404.860003.77520K562RPS19
CYBRD1ENSG00000071967.7712.195801002.59000-0.493403.720502.53780K562RPS3
CYBRD1ENSG00000071967.7939.53340597.360400.653204.664202.93180K562RRP9
CYBRD1ENSG00000071967.7969.43730722.438900.424204.498102.98560K562SRSF7
CYBRD1ENSG00000071967.7790.07270619.045000.351803.025301.67680K562SSB
CYBRD1ENSG00000071967.71836.229601405.165400.385904.665402.76190K562SUCLG1
CYBRD1ENSG00000071967.71633.06880891.323300.873503.747401.98330K562SUPT6H
CYBRD1ENSG00000071967.71324.81610820.761600.6907011.037609.42330K562U2AF2
CYBRD1ENSG00000071967.71074.61250829.684500.373103.206502.26910K562WDR3
CYBRD1ENSG00000071967.7457.32110609.59750-0.414602.415701.31130K562XRN2
CYBRD1ENSG00000071967.71720.225901342.720600.357303.181602.24870K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CYBRD1 is not available on ENCORE database.





1 RBPs can affect the splicing of CYBRD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECYBRD1ENSG00000071967.7chr2+172398094172398303172378857172379248172409855172410010-0.098000.004000.07735excludedK562RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CYBRD1 is not avaliable on ENCORE database.