TOR1A

General Information

Gene Name       : TOR1A
Gene ID             : ENSG00000136827.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TOR1A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TOR1AENSG00000136827.1123.6129.3626.48ENCSR000AEF
HepG2TOR1AENSG00000136827.1126.2030.2528.23ENCSR985KAT
K562TOR1AENSG00000136827.1149.8149.7849.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TOR1A is not avaliable on ENCORE database.



Proteins bound to RNA
  • TOR1A RNA is bound by 14 proteins.  







eCLIP assay for TOR1A is not avaliable on ENCORE database.





14 proteins are bound to TOR1A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9132576071132576092-3'-UTR,intron-Distal5.6075020.48249K562RBM15
chr9132575689132575786-3'-UTR,intron-Distal3.365724.61367K562UPF1
chr9132576131132576187-3'-UTR,intron-Distal3.784403.02250K562YBX3
chr9132576061132576104-3'-UTR,intron-Distal3.768264.22136HepG2RBM15
chr9132576049132576071-3'-UTR,intron-Distal4.8360816.96618K562RBM15
chr9132576092132576103-3'-UTR,intron-Distal6.2623915.69259K562RBM15
chr9132575723132575797-3'-UTR,intron-Distal,intron-Proximal3.967363.45716HepG2AKAP1
chr9132575680132575787-3'-UTR,intron-Distal3.486234.21448HepG2UPF1
chr9132576103132576128-3'-UTR,intron-Distal3.912383.15006K562RBM15
chr9132576054132576104-3'-UTR,intron-Distal4.543804.19989HepG2UPF1
chr9132576204132576240-3'-UTR,intron-Distal3.171313.34231K562RBM15
chr9132575695132575755-3'-UTR,intron-Distal3.754063.58455K562U2AF2
chr9132586293132586372-5'-UTR,CDS,intron-Distal6.0686630.77170HepG2DDX3X
chr9132586229132586385-5'-UTR,CDS,intron-Distal,intron-Proximal4.9563918.21461K562DDX3X
chr9132584950132585114-CDS,intron-Distal3.454414.71371HepG2GRWD1
chr9132580925132580979-CDS,intron-Distal,intron-Proximal4.869655.13952K562SF3B4
chr9132580778132580906-CDS,intron-Distal,intron-Proximal3.665285.74979HepG2GRWD1
chr9132584751132584869-CDS,intron-Distal,intron-Proximal5.278566.04760K562AQR
chr9132576285132576312-CDS,intron-Distal4.032893.81597K562RBM15
chr9132584998132585073-CDS,intron-Distal3.398814.31744K562YBX3
chr9132586195132586243-CDS,intron-Distal5.3511911.78230HepG2DDX3X
chr9132585086132585162-CDS,intron-Distal,intron-Proximal3.782513.81059HepG2AQR
chr9132580981132581030-CDS,intron-Distal,intron-Proximal5.041817.02967HepG2PRPF8
chr9132586243132586293-CDS,intron-Distal5.0292728.64009HepG2DDX3X
chr9132581172132581233-CDS,intron-Distal,intron-Proximal4.672064.86944K562AQR
chr9132585267132585345-intron-Distal4.859906.43928K562GTF2F1
chr9132585695132585779-intron-Distal5.161347.33617K562GTF2F1
chr9132585680132585770-intron-Distal4.347433.85435K562PRPF8
chr9132576529132576659-intron-Distal4.720076.11596HepG2PRPF4
chr9132578311132578404-intron-Distal3.792205.23323K562GTF2F1
chr9132578267132578406-intron-Distal3.663783.95034K562DROSHA
chr9132585273132585328-intron-Distal3.832793.16310HepG2CSTF2T
chr9132576585132576652-intron-Distal4.049155.51270K562GTF2F1
chr9132585680132585763-intron-Distal4.007673.52436K562DROSHA
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TOR1A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TOR1A is not available on ENCORE database.

  • 70 RBPs can affect the levels of TOR1A.  








The Knockdown/knockout RNA-Seq assay for TOR1A is not available on ENCORE database.





70 RBPs can affect the gene expression of TOR1A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TOR1AENSG00000136827.11691.09830566.629800.286402.308001.74360HepG2ACO1
TOR1AENSG00000136827.111476.59390764.607000.9494011.1401010.14130HepG2AKAP1
TOR1AENSG00000136827.11815.55030632.688700.366202.025001.34930HepG2ASCC1
TOR1AENSG00000136827.11469.24160653.32480-0.477503.406402.74920HepG2BOP1
TOR1AENSG00000136827.11815.78500601.084700.440502.494301.75550HepG2CIRBP
TOR1AENSG00000136827.11683.74610566.560500.271102.177501.57630HepG2CKAP4
TOR1AENSG00000136827.111099.41280771.932000.510106.918105.98880HepG2CELF1
TOR1AENSG00000136827.11681.71030481.327900.502003.888003.09750HepG2DDX21
TOR1AENSG00000136827.11785.27260604.217300.378002.003001.33360HepG2DDX55
TOR1AENSG00000136827.11626.66500414.768800.595304.141103.05020HepG2EIF3D
TOR1AENSG00000136827.11992.15690650.796000.608303.963903.14710HepG2EIF4B
TOR1AENSG00000136827.11709.46460553.746300.357402.492701.69930HepG2EWSR1
TOR1AENSG00000136827.11199.24520600.81970-1.592409.361807.52650HepG2FTO
TOR1AENSG00000136827.11646.52640866.33980-0.422204.878103.95970HepG2HNRNPF
TOR1AENSG00000136827.11455.96330648.83470-0.508903.419202.72800HepG2HNRNPLL
TOR1AENSG00000136827.111482.745601014.794700.547003.986502.98620HepG2LARP4
TOR1AENSG00000136827.11688.82710523.902300.394702.575901.48010HepG2LARP7
TOR1AENSG00000136827.111010.50650674.533800.583004.960404.08970HepG2MAGOH
TOR1AENSG00000136827.11899.64300678.357500.407202.120201.56340HepG2MATR3
TOR1AENSG00000136827.11674.57400434.080300.635902.915001.83500HepG2METAP2
TOR1AENSG00000136827.11993.34970671.625000.564505.792204.66430HepG2MSI2
TOR1AENSG00000136827.11241.46450554.79780-1.200207.742205.89680HepG2NONO
TOR1AENSG00000136827.11277.87280441.19240-0.667003.037502.10480HepG2PABPC1
TOR1AENSG00000136827.11750.64210618.989100.278102.130601.37980HepG2PARN
TOR1AENSG00000136827.11501.44330678.02410-0.435204.258103.32210HepG2PRPF4
TOR1AENSG00000136827.111147.46790834.027100.460207.549306.66990HepG2PUM1
TOR1AENSG00000136827.111024.78240833.422600.298102.270901.66120HepG2PUM2
TOR1AENSG00000136827.11864.53110710.062200.283902.120601.63440HepG2NELFE
TOR1AENSG00000136827.11711.10600933.33550-0.392303.127302.40790HepG2RPLP0
TOR1AENSG00000136827.11789.39360403.607500.9677013.3479012.12690HepG2RPS19
TOR1AENSG00000136827.11771.08560582.630900.404202.550501.78020HepG2RPS2
TOR1AENSG00000136827.11568.60550405.052700.489203.098702.10140HepG2SERBP1
TOR1AENSG00000136827.11784.74090649.446300.272902.499701.88360HepG2SMN1
TOR1AENSG00000136827.11790.01560574.296900.460002.508501.60020HepG2SMNDC1
TOR1AENSG00000136827.11313.42220714.57610-1.1890010.081508.59450HepG2SNRNP70
TOR1AENSG00000136827.11494.51090691.03890-0.482802.614301.64430HepG2SRSF3
TOR1AENSG00000136827.11687.71970851.16760-0.307603.000202.28000HepG2SRSF7
TOR1AENSG00000136827.11677.79520886.21570-0.386804.297103.68730HepG2SSB
TOR1AENSG00000136827.111163.22720882.233400.398805.363504.54930HepG2SUCLG1
TOR1AENSG00000136827.11793.80670601.498900.400102.253101.63380HepG2SUPV3L1
TOR1AENSG00000136827.11459.83260613.05590-0.414903.972103.31990HepG2TRIM56
TOR1AENSG00000136827.11965.99100767.564200.331602.465301.64320HepG2TUFM
TOR1AENSG00000136827.11905.88870709.884800.351602.170801.60750HepG2U2AF1
TOR1AENSG00000136827.11448.60140592.10940-0.400401.997701.37360HepG2XRN2
TOR1AENSG00000136827.11437.94990718.86700-0.715007.708206.82840K562AGGF1
TOR1AENSG00000136827.11512.27300747.99160-0.546104.960404.07560K562AKAP8L
TOR1AENSG00000136827.11610.87230802.18690-0.393103.085402.07550K562BCLAF1
TOR1AENSG00000136827.11535.06380769.62840-0.524503.907502.86940K562BOP1
TOR1AENSG00000136827.111547.556001135.546300.446506.900905.93620K562DDX47
TOR1AENSG00000136827.111652.518301188.291100.475707.287806.20260K562EIF2S2
TOR1AENSG00000136827.11737.54320530.298900.475804.516303.51020K562EIF3G
TOR1AENSG00000136827.11611.97670436.168400.488502.456401.68240K562EIF4A3
TOR1AENSG00000136827.11515.52160392.761200.392302.415701.35800K562EIF4B
TOR1AENSG00000136827.11461.40550705.80820-0.613204.917703.66190K562FTO
TOR1AENSG00000136827.111005.56830453.591001.1484025.2708023.55720K562FXR1
TOR1AENSG00000136827.111264.197201583.44450-0.324802.613501.87760K562GRSF1
TOR1AENSG00000136827.11578.66860824.60660-0.511004.943303.52270K562HNRNPA1
TOR1AENSG00000136827.11566.96030793.88330-0.485703.067302.19550K562KIF1C
TOR1AENSG00000136827.11712.65580957.22560-0.425702.779801.96810K562MTPAP
TOR1AENSG00000136827.11851.646701063.66930-0.320701.994101.34820K562NSUN2
TOR1AENSG00000136827.11305.39950596.71500-0.966304.754203.36060K562PABPN1
TOR1AENSG00000136827.11654.65350903.67440-0.465103.345601.61030K562PKM
TOR1AENSG00000136827.11954.17500614.677600.634305.926304.82690K562PRPF8
TOR1AENSG00000136827.11829.33610592.652500.484704.663003.82310K562PTBP1
TOR1AENSG00000136827.112319.291401745.154600.410204.569903.17300K562PUM1
TOR1AENSG00000136827.11435.15770741.96020-0.769807.908807.03780K562PUS1
TOR1AENSG00000136827.11522.45010722.79770-0.468304.494103.75750K562RBM15
TOR1AENSG00000136827.11879.05420568.291900.629206.534005.17080K562RBM22
TOR1AENSG00000136827.11873.94480598.034300.547204.095802.73490K562NELFE
TOR1AENSG00000136827.11533.64000314.638500.762105.468303.99260K562RPS3
TOR1AENSG00000136827.111003.50100700.041700.519405.094903.62740K562SAFB
TOR1AENSG00000136827.11573.80690444.098900.369602.605501.77840K562SF3B4
TOR1AENSG00000136827.11873.66920580.995200.588506.226805.17590K562SRSF1
TOR1AENSG00000136827.111152.32140788.064400.548106.704205.41580K562SYNCRIP
TOR1AENSG00000136827.11870.01400588.009000.565105.037504.06720K562TARDBP
TOR1AENSG00000136827.11484.45780651.56830-0.427502.839001.87890K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TOR1A is not available on ENCORE database.





1 RBPs can affect the splicing of TOR1A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSTOR1AENSG00000136827.11chr9-1325810231325812671325810231325811991325848591325851250.118000.000000.00003longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TOR1A is not avaliable on ENCORE database.