RGCC

General Information

Gene Name       : RGCC
Gene ID             : ENSG00000102760.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RGCC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RGCCENSG00000102760.125.186.525.85ENCSR000AEF
HepG2RGCCENSG00000102760.121.432.521.98ENCSR985KAT
K562RGCCENSG00000102760.122.723.613.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RGCC is not avaliable on ENCORE database.



Proteins bound to RNA
  • RGCC RNA is bound by 3 proteins.  







eCLIP assay for RGCC is not avaliable on ENCORE database.





3 proteins are bound to RGCC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr134204478142044829+3'-UTR4.106333.83925K562YBX3
chr134204472842044781+3'-UTR3.322814.08171K562YBX3
chr134204036442040479+intron-Distal5.009636.09580K562HNRNPL
chr134204045942040479+intron-Distal5.8236312.92204K562AGGF1
chr134204033642040459+intron-Distal6.9954831.55702K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RGCC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RGCC is not available on ENCORE database.

  • 80 RBPs can affect the levels of RGCC.  








The Knockdown/knockout RNA-Seq assay for RGCC is not available on ENCORE database.





80 RBPs can affect the gene expression of RGCC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RGCCENSG00000102760.1266.1694030.179201.132502.628901.58130HepG2AATF
RGCCENSG00000102760.1259.8326015.222301.974605.979905.15420HepG2ACO1
RGCCENSG00000102760.12146.5919035.716202.037109.647308.71940HepG2AKAP1
RGCCENSG00000102760.12159.0374076.703401.051904.543603.22090HepG2AKAP8
RGCCENSG00000102760.1247.9853015.312301.647802.393301.67430HepG2AKAP8L
RGCCENSG00000102760.1289.2552029.553601.594505.399704.31940HepG2ASCC1
RGCCENSG00000102760.1229.0204011.067601.390601.807501.31430HepG2BOP1
RGCCENSG00000102760.1230.7394076.63250-1.317903.454902.35450HepG2CCAR1
RGCCENSG00000102760.122.6427028.07750-3.409304.747403.74940HepG2CIRBP
RGCCENSG00000102760.1241.9395010.160902.045204.029503.21420HepG2CPSF6
RGCCENSG00000102760.1263.3689017.856301.827204.575903.18000HepG2CPSF7
RGCCENSG00000102760.12136.8872043.364401.658309.106208.06560HepG2CELF1
RGCCENSG00000102760.122.1103033.30070-3.980007.247506.20170HepG2DDX21
RGCCENSG00000102760.126.0390032.58410-2.431804.132003.00590HepG2DDX24
RGCCENSG00000102760.1238.1173015.497401.298302.051601.37590HepG2DDX55
RGCCENSG00000102760.1298.0445011.538303.0869012.2308010.27020HepG2DDX59
RGCCENSG00000102760.12447.9760029.385603.9301058.1943055.94480HepG2DDX6
RGCCENSG00000102760.1293.9696028.256101.733506.233405.36260HepG2EIF2S1
RGCCENSG00000102760.120.8545031.22970-5.191707.762506.69460HepG2EIF4A3
RGCCENSG00000102760.1283.5592030.400001.458603.852903.04570HepG2EIF4B
RGCCENSG00000102760.1237.3387014.894601.325802.232301.48290HepG2EWSR1
RGCCENSG00000102760.1267.5790027.712401.285903.605802.25410HepG2FAM120A
RGCCENSG00000102760.12180.8749021.907803.0454017.5885015.93630HepG2FIP1L1
RGCCENSG00000102760.1210.5579031.01960-1.554902.162101.37990HepG2G3BP2
RGCCENSG00000102760.1275.5639019.332401.966606.289204.10140HepG2GTF2F1
RGCCENSG00000102760.1239.9282014.546401.456602.709501.74000HepG2HDGF
RGCCENSG00000102760.122.1169036.39770-4.103806.956306.00100HepG2HNRNPA1
RGCCENSG00000102760.12359.44500216.171700.733504.267702.52060HepG2HNRNPAB
RGCCENSG00000102760.1210.3837040.48580-1.963103.402702.64070HepG2HNRNPC
RGCCENSG00000102760.1273.8578029.580901.320003.377802.60890HepG2HNRNPK
RGCCENSG00000102760.1297.6836042.480301.201204.571103.72260HepG2HNRNPL
RGCCENSG00000102760.1292.7704041.081501.175104.510703.59320HepG2ILF2
RGCCENSG00000102760.129.9022031.51010-1.670002.434901.81860HepG2MAGOH
RGCCENSG00000102760.1276.1661032.455101.230602.304001.34180HepG2METAP2
RGCCENSG00000102760.12204.6217046.240502.1456019.8012017.88070HepG2NOL12
RGCCENSG00000102760.12479.35710239.250401.002506.053104.70340HepG2PABPC1
RGCCENSG00000102760.1273.2307028.892601.341603.791602.95630HepG2PABPC4
RGCCENSG00000102760.12221.8754039.808902.4785025.8364023.76970HepG2PARN
RGCCENSG00000102760.1268.6387027.367601.326503.522702.85570HepG2PCBP1
RGCCENSG00000102760.1271.9696027.835601.370403.543802.94150HepG2PTBP1
RGCCENSG00000102760.128.2511044.13920-2.419405.219104.43270HepG2PUF60
RGCCENSG00000102760.1298.3122046.820801.070102.731102.06450HepG2PUM2
RGCCENSG00000102760.12139.1002018.756002.8906013.8404012.37290HepG2RAVER1
RGCCENSG00000102760.1292.3365027.373601.754006.361105.37720HepG2RBM25
RGCCENSG00000102760.1279.5639035.731401.154802.211101.33370HepG2RBM27
RGCCENSG00000102760.1258.06120262.87400-2.1787019.2332017.21190HepG2RPS3A
RGCCENSG00000102760.1262.1372011.848302.390706.569005.41340HepG2RRP9
RGCCENSG00000102760.12121.12480249.69740-1.043705.343103.26450HepG2SBDS
RGCCENSG00000102760.1264.1786029.002001.145802.412201.85440HepG2SF3B4
RGCCENSG00000102760.12153.6380019.096903.0080021.2911018.67160HepG2SMNDC1
RGCCENSG00000102760.1271.9081018.227301.980006.541404.05470HepG2SND1
RGCCENSG00000102760.12692.0338034.815204.3130092.3008090.45710HepG2SRFBP1
RGCCENSG00000102760.1236.1721011.706701.627402.321001.41440HepG2SRSF3
RGCCENSG00000102760.1251.9369019.030901.448303.384602.62560HepG2SRSF7
RGCCENSG00000102760.1298.3779024.613001.998809.059908.16380HepG2SRSF9
RGCCENSG00000102760.123.1315030.23030-3.271105.372104.70400HepG2SSB
RGCCENSG00000102760.12237.0566083.212201.5103011.056008.76010HepG2SSRP1
RGCCENSG00000102760.1274.5219017.526602.088005.616203.91460HepG2SUB1
RGCCENSG00000102760.1224.1330049.56300-1.038302.059901.50810HepG2SUCLG1
RGCCENSG00000102760.12103.8372027.177101.933807.094706.26880HepG2TAF15
RGCCENSG00000102760.1222.9761081.73320-1.830805.221003.79310HepG2TBRG4
RGCCENSG00000102760.1266.9538010.348102.693709.398907.78350HepG2TFIP11
RGCCENSG00000102760.1271.0775024.998001.507504.515703.45510HepG2TIA1
RGCCENSG00000102760.125.8802039.07900-2.732505.833505.15840HepG2TIAL1
RGCCENSG00000102760.1284.0001039.428801.091003.620102.99340HepG2TRIM56
RGCCENSG00000102760.1269.4612018.733901.890504.655603.85130HepG2U2AF1
RGCCENSG00000102760.12117.3683031.599701.893004.382303.12960HepG2U2AF2
RGCCENSG00000102760.12183.7941045.639202.0096010.462608.79930HepG2UBE2L3
RGCCENSG00000102760.1275.869909.121103.0562013.4130011.76940HepG2UCHL5
RGCCENSG00000102760.1222.797207.655901.574101.868101.35530HepG2UTP3
RGCCENSG00000102760.12137.91970235.45910-0.771603.572602.31960HepG2XPO5
RGCCENSG00000102760.1261.4528018.435001.736903.813802.32440HepG2XRCC5
RGCCENSG00000102760.12154.9913073.652001.073305.461504.70690K562AGGF1
RGCCENSG00000102760.12145.0310076.639300.920103.997003.20980K562AKAP8L
RGCCENSG00000102760.12162.38440108.754900.578201.822501.32660K562AQR
RGCCENSG00000102760.12155.5213088.166800.818702.481501.48480K562CNOT7
RGCCENSG00000102760.12144.8658086.414000.745303.018901.48470K562DDX19B
RGCCENSG00000102760.1226.3844074.26200-1.492904.883003.96410K562EIF2S2
RGCCENSG00000102760.12136.4018075.997600.843702.737702.19670K562PUS1
RGCCENSG00000102760.1228.8246068.14680-1.241303.506802.25550K562NELFE
RGCCENSG00000102760.1246.8479097.96470-1.064303.823702.99130K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RGCC is not available on ENCORE database.






No RBPs affect the alternative splcing events of RGCC on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RGCC is not avaliable on ENCORE database.