PRIMPOL

General Information

Gene Name       : PRIMPOL
Gene ID             : ENSG00000164306.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRIMPOL)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRIMPOLENSG00000164306.108.157.767.96ENCSR000AEF
HepG2PRIMPOLENSG00000164306.105.467.396.42ENCSR985KAT
K562PRIMPOLENSG00000164306.1012.9510.8311.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRIMPOL is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRIMPOL RNA is bound by 9 proteins.  







eCLIP assay for PRIMPOL is not avaliable on ENCORE database.





9 proteins are bound to PRIMPOL RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4185582998185583050+5'-UTR,CDS,intron-Distal3.754074.76554HepG2BCLAF1
chr4185570913185571000+5'-UTR4.329384.52089HepG2NCBP2
chr4185598499185598557+intron-Distal5.220229.43009K562GTF2F1
chr4185598481185598545+intron-Distal5.0777820.87566K562ILF3
chr4185601852185601920+intron-Distal4.341364.85866HepG2QKI
chr4185598859185598901+intron-Distal4.745367.24177K562CSTF2T
chr4185597290185597346+intron-Distal4.4585410.67746K562ILF3
chr4185607262185607370+intron-Distal3.562554.08064K562KHSRP
chr4185596699185596775+intron-Distal4.204254.22598K562CSTF2T
chr4185597281185597290+intron-Distal3.982797.79189K562ILF3
chr4185598485185598499+intron-Distal5.945867.60596K562GTF2F1
chr4185598346185598362+intron-Distal5.3270721.20050K562CSTF2T
chr4185598307185598383+intron-Distal5.9638931.56040K562ILF3
chr4185598312185598322+intron-Distal5.486394.46189K562GTF2F1
chr4185598222185598274+intron-Distal3.813153.03048HepG2GTF2F1
chr4185598486185598559+intron-Distal6.6669330.84396K562CSTF2T
chr4185598321185598346+intron-Distal5.3935621.20050K562CSTF2T
chr4185598918185598952+intron-Distal4.456685.00655K562ILF3
chr4185598183185598295+intron-Distal6.0329715.61406HepG2PCBP2
chr4185598433185598481+intron-Distal4.8529511.37824K562ILF3
chr4185598392185598433+intron-Distal4.859777.75663K562CSTF2T
chr4185597281185597376+intron-Distal5.035144.07596K562GTF2F1
chr4185598312185598362+intron-Distal3.714184.20880HepG2GTF2F1
chr4185598322185598372+intron-Distal4.720224.13833K562GTF2F1
chr4185598901185598949+intron-Distal4.965708.16302K562CSTF2T
chr4185597119185597181+intron-Distal4.492744.70168K562CSTF2T
chr4185598435185598495+intron-Distal4.605633.58513HepG2GTF2F1
chr4185598226185598276+intron-Distal4.330323.55787K562PTBP1
chr4185598433185598486+intron-Distal5.8974615.46130K562CSTF2T
chr4185597281185597351+intron-Distal4.054056.87384K562CSTF2T
chr4185598309185598361+intron-Distal5.047465.77028HepG2PCBP2
chr4185598232185598278+intron-Distal4.842077.68230K562CSTF2T
chr4185598312185598321+intron-Distal5.8429615.73427K562CSTF2T
chr4185597122185597185+intron-Distal3.544224.30082K562ILF3
chr4185598219185598304+intron-Distal6.3665624.77875K562ILF3
chr4185598310185598401+intron-Distal3.919403.24590HepG2ILF3
chr4185606679185606730+intron-Proximal3.638553.02234K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRIMPOL is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRIMPOL is not available on ENCORE database.

  • 48 RBPs can affect the levels of PRIMPOL.  








The Knockdown/knockout RNA-Seq assay for PRIMPOL is not available on ENCORE database.





48 RBPs can affect the gene expression of PRIMPOL :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRIMPOLENSG00000164306.6207.44340152.942700.439601.922701.39850HepG2ACO1
PRIMPOLENSG00000164306.6139.90990257.93980-0.882506.443405.37950HepG2DAZAP1
PRIMPOLENSG00000164306.674.09440132.69110-0.840602.340701.44210HepG2DDX59
PRIMPOLENSG00000164306.684.01550139.15630-0.728001.974601.46410HepG2EIF2S1
PRIMPOLENSG00000164306.696.93680142.64570-0.557301.986501.37170HepG2HNRNPF
PRIMPOLENSG00000164306.6164.09460234.94570-0.517802.450801.81230HepG2HNRNPL
PRIMPOLENSG00000164306.6222.00970155.155200.516801.956401.40070HepG2MAGOH
PRIMPOLENSG00000164306.6154.89850244.17640-0.656602.790002.19110HepG2PUF60
PRIMPOLENSG00000164306.6214.77150147.145700.545502.271301.77100HepG2NELFE
PRIMPOLENSG00000164306.6198.56790137.661800.528402.100701.57430HepG2SF3B4
PRIMPOLENSG00000164306.6154.64070234.16600-0.598603.038302.30740HepG2SLBP
PRIMPOLENSG00000164306.665.75310109.96130-0.741902.640502.08650HepG2TRIM56
PRIMPOLENSG00000164306.681.40170124.24490-0.610102.055201.43790HepG2UPF1
PRIMPOLENSG00000164306.657.66530136.64570-1.244706.842606.08260HepG2ZNF622
PRIMPOLENSG00000164306.6156.59680372.13540-1.2488011.7725010.69590K562AGGF1
PRIMPOLENSG00000164306.6278.73960408.86570-0.552702.967301.93980K562AKAP8
PRIMPOLENSG00000164306.6152.11130387.21020-1.3480014.3782012.70690K562AKAP8L
PRIMPOLENSG00000164306.6210.22740486.34010-1.2100011.4827010.40700K562AQR
PRIMPOLENSG00000164306.6269.18740406.25120-0.593802.957702.01590K562ATP5C1
PRIMPOLENSG00000164306.6203.61510286.90370-0.494702.812701.84450K562BCLAF1
PRIMPOLENSG00000164306.6300.41230416.75060-0.472203.044402.11880K562DKC1
PRIMPOLENSG00000164306.6125.96890236.93370-0.911404.748703.53810K562EFTUD2
PRIMPOLENSG00000164306.6489.66170343.483300.511404.073503.22630K562EIF2S2
PRIMPOLENSG00000164306.6168.34750253.75560-0.592002.292001.36040K562EIF3D
PRIMPOLENSG00000164306.6130.90260204.40490-0.642902.724501.93570K562GPKOW
PRIMPOLENSG00000164306.6349.95310457.67200-0.387202.116501.44970K562GRSF1
PRIMPOLENSG00000164306.6211.37430316.65470-0.583103.792502.74430K562HNRNPU
PRIMPOLENSG00000164306.6661.52200339.625400.9617010.569809.03990K562HSPD1
PRIMPOLENSG00000164306.6193.28350291.93250-0.594902.673401.67000K562IGF2BP2
PRIMPOLENSG00000164306.6258.72140410.97420-0.667605.091603.90620K562KIF1C
PRIMPOLENSG00000164306.6240.97560393.36500-0.707003.593402.31590K562MAK16
PRIMPOLENSG00000164306.6279.21720460.38830-0.721504.904403.62630K562MBNL1
PRIMPOLENSG00000164306.6169.54960322.69470-0.928505.229703.88350K562NAA15
PRIMPOLENSG00000164306.6233.13550303.29740-0.379601.953301.31330K562NSUN2
PRIMPOLENSG00000164306.6131.35020366.86020-1.481802.748201.76150K562PABPN1
PRIMPOLENSG00000164306.6260.72700181.784500.520202.556801.78960K562POLR2G
PRIMPOLENSG00000164306.6815.32100630.791100.370103.026801.90690K562PUM1
PRIMPOLENSG00000164306.6134.75590384.10290-1.5111015.3100014.07280K562PUS1
PRIMPOLENSG00000164306.6167.68170374.17040-1.1580010.702209.55980K562RBM15
PRIMPOLENSG00000164306.6203.11080286.03510-0.493902.469801.67910K562RBM22
PRIMPOLENSG00000164306.6108.54950185.64540-0.774202.861701.50600K562RBM25
PRIMPOLENSG00000164306.6113.75860335.68290-1.561102.763301.56110K562SF1
PRIMPOLENSG00000164306.6222.04820299.29820-0.430702.189101.45650K562SF3A3
PRIMPOLENSG00000164306.6203.99650306.63930-0.588003.818302.73770K562SRPK2
PRIMPOLENSG00000164306.697.84100292.33560-1.5791015.5553013.87750K562SRSF1
PRIMPOLENSG00000164306.6145.10510223.32640-0.622102.374901.43750K562SUPV3L1
PRIMPOLENSG00000164306.6182.33650295.89830-0.698504.134303.26400K562TARDBP
PRIMPOLENSG00000164306.6194.79870389.34260-0.999104.958103.05780K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRIMPOL is not available on ENCORE database.





5 RBPs can affect the splicing of PRIMPOL :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRIMPOLENSG00000164306.6chr4+1855993851855995481855933261855936141856067291856068380.301000.000110.03627includedK562PUM1
SEPRIMPOLENSG00000164306.6chr4+185606562185606652185603401185603490185606729185606838-0.137000.008130.06884excludedK562AQR
SEPRIMPOLENSG00000164306.6chr4+1856153631856155241856127971856128661856156751856161060.189000.000010.00047includedK562PUS1
A3SSPRIMPOLENSG00000164306.6chr4+185606729185606838185606759185606838185606565185606652-0.165000.002590.01621shorterK562AQR
MXEPRIMPOLENSG00000164306.6chr4+1855829271855830571855870701855872181855804931855805911855933261855936140.250000.001280.085551includedK562HNRNPL
MXEPRIMPOLENSG00000164306.6chr4+1855731761855732541855782381855784741855708481855710621855804931855805910.139000.007230.091191includedHepG2FTO

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRIMPOL is not avaliable on ENCORE database.