BAGE2

General Information

Gene Name       : BAGE2
Gene ID             : ENSG00000187172.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BAGE2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BAGE2ENSG00000187172.150.000.000.00ENCSR000AEF
HepG2BAGE2ENSG00000187172.150.000.000.00ENCSR985KAT
K562BAGE2ENSG00000187172.1510.1411.1810.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BAGE2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BAGE2 RNA is bound by 26 proteins.  







eCLIP assay for BAGE2 is not avaliable on ENCORE database.





26 proteins are bound to BAGE2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr211108452511084567-intron-Distal3.388943.68882K562FAM120A
chr211108533811085435-intron-Distal6.3185318.92380K562GTF2F1
chr211108561811085654-intron-Distal5.140796.76416K562CSTF2T
chr211106085811060900-intron-Distal3.244465.96041K562KHSRP
chr211106739311067492-intron-Distal3.765757.77652K562QKI
chr211108535511085444-intron-Distal5.5092617.76324K562EWSR1
chr211107152911071616-intron-Distal3.515274.78995K562MATR3
chr211109599711096108-intron-Distal4.136607.77222K562RBFOX2
chr211106330111063400-intron-Distal4.0802814.94240K562KHSRP
chr211108524111085292-intron-Distal5.5103510.06356K562FAM120A
chr211109835011098442-intron-Distal5.381368.40257K562GTF2F1
chr211108533211085428-intron-Distal5.3657518.89943K562FAM120A
chr211104748111047561-intron-Distal3.052067.10910K562UCHL5
chr211109754611097637-intron-Distal3.3457712.84530K562ZNF622
chr211109846111098550-intron-Distal3.776803.34442K562FUS
chr211104425511044298-intron-Distal4.029693.78162K562HNRNPM
chr211108514911085242-intron-Distal3.482195.07243K562FUS
chr211106031411060367-intron-Distal3.355625.39758K562KHSRP
chr211108501211085123-intron-Distal4.2231023.39482K562FAM120A
chr211106591911065991-intron-Distal3.205115.42536K562KHSRP
chr211105827011058341-intron-Distal,intron-Proximal3.791307.23776K562U2AF2
chr211106308511063112-intron-Distal4.267565.02888K562KHSRP
chr211109834211098433-intron-Distal3.884895.27813K562EWSR1
chr211107131211071351-intron-Distal3.959639.39331K562EXOSC5
chr211104390511043968-intron-Distal3.515384.65797K562TARDBP
chr211107164411071696-intron-Distal3.277485.58732K562HNRNPM
chr211108545811085521-intron-Distal4.158773.94652K562FUS
chr211107113311071179-intron-Distal3.571667.98857K562EXOSC5
chr211108559011085690-intron-Distal6.8065915.74005K562ZRANB2
chr211108503411085131-intron-Distal4.4696714.40417K562FTO
chr211108567111085723-intron-Distal5.4458710.45579K562FASTKD2
chr211107148711071537-intron-Distal4.0325915.17881K562HNRNPM
chr211108651311086579-intron-Distal3.076396.31194K562FAM120A
chr211108705011087101-intron-Distal3.077524.67518K562FAM120A
chr211108543211085523-intron-Distal7.9810635.41703K562FASTKD2
chr211104680111046848-intron-Distal3.194093.35044K562HNRNPM
chr211104672411046801-intron-Distal5.082908.67086K562HNRNPM
chr211108560111085659-intron-Distal5.461414.57355K562FTO
chr211108533511085447-intron-Distal5.7701335.95022K562CSTF2T
chr211104658411046701-intron-Distal3.809405.06094K562HNRNPM
chr211100261411002735-intron-Distal4.607856.73684K562KHSRP
chr211109818211098267-intron-Distal4.615485.54639K562CSTF2T
chr211108544011085534-intron-Distal6.7938413.96043K562GTF2F1
chr211109855011098703-intron-Distal4.013909.34840K562FUS
chr211108630811086343-intron-Distal3.592413.15535K562EWSR1
chr211109835011098450-intron-Distal4.255548.46178K562CSTF2T
chr211107077011070818-intron-Distal4.229417.31419K562EXOSC5
chr211103913211039219-intron-Distal3.367287.48787K562RBM15
chr211108543511085525-intron-Distal6.4818430.02620K562ZRANB2
chr211104420211044255-intron-Distal4.455225.31505K562HNRNPM
chr211108756011087620-intron-Distal3.066003.61796K562FAM120A
chr211107135111071379-intron-Distal3.3063913.22053K562EXOSC5
chr211108543211085517-intron-Distal5.0947914.84028K562AKAP8L
chr211108503211085116-intron-Distal5.7818911.64683K562EWSR1
chr211107138011071407-intron-Distal3.6066712.49695K562EXOSC5
chr211108616311086211-intron-Distal3.422413.15824K562FTO
chr211107164711071673-intron-Distal3.618214.91094K562EXOSC5
chr211108636611086399-intron-Distal3.536493.41462K562EWSR1
chr211108609911086124-intron-Distal4.409605.40707K562CSTF2T
chr211108523811085303-intron-Distal5.9079617.47257K562CSTF2T
chr211108501611085120-intron-Distal4.0961520.24159K562CSTF2T
chr211108505911085149-intron-Distal3.193964.49566K562FUS
chr211103933011039418-intron-Distal3.344557.50303K562UCHL5
chr211108641311086466-intron-Distal5.4600211.90376K562CSTF2T
chr211107101911071063-intron-Distal3.5579411.72886K562EXOSC5
chr211109764611097735-intron-Distal,intron-Proximal4.061645.67192K562SF3B4
chr211108560211085671-intron-Distal5.4088720.51878K562FASTKD2
chr211104662111046687-intron-Distal4.249733.01456K562EXOSC5
chr211107173411071791-intron-Distal3.174753.72827K562HNRNPM
chr211104742411047481-intron-Distal,intron-Proximal5.8775310.48996K562AQR
chr211108479611084841-intron-Distal3.591657.88956K562CSTF2T
chr211108544711085520-intron-Distal6.6425724.03942K562CSTF2T
chr211107135111071404-intron-Distal5.2858910.02215K562HNRNPM
chr211106717011067226-intron-Distal3.739896.07515K562QKI
chr211103937711039428-intron-Distal4.057146.14226K562ZNF622
chr211108559611085635-intron-Distal4.909375.26338K562AKAP8L
chr211107148711071535-intron-Distal4.8985711.90186K562EXOSC5
chr211106579511065903-intron-Distal3.221587.36118K562KHSRP
chr211106072911060803-intron-Distal4.0529214.86211K562KHSRP
chr211106711411067159-intron-Distal3.208163.62826K562HNRNPL
chr211109870711098790-intron-Distal3.409847.85262K562UCHL5
chr211105797511058048-intron-Distal5.3924511.96615K562KHSRP
chr211103917811039238-intron-Distal3.179987.64415K562ZNF622
chr211108513111085191-intron-Distal4.519156.76453K562FTO
chr211108524211085311-intron-Distal4.180485.51985K562FUS
chr211100306511003131-intron-Distal5.2824512.02468K562PTBP1
chr211109819611098286-intron-Distal5.113268.00387K562GTF2F1
chr211105988811059940-intron-Distal,intron-Proximal3.109107.02852K562KHSRP
chr211109631411096388-intron-Distal3.294886.88901K562ILF3
chr211108503011085118-intron-Distal3.222594.35067K562GTF2F1
chr211107174511071779-intron-Distal3.916028.47592K562EXOSC5
chr211107169611071745-intron-Distal4.8305511.57958K562EXOSC5
chr211103891011038982-intron-Distal3.539793.63681K562RBM15
chr211108545011085510-intron-Distal5.626618.01674K562FAM120A
chr211108544411085519-intron-Distal6.4354315.76817K562EWSR1
chr211108633311086406-intron-Distal3.675906.83930K562FAM120A
chr211109754111097627-intron-Distal,intron-Proximal4.607734.67299K562DDX24
chr211107153511071613-intron-Distal4.1668316.15459K562EXOSC5
chr211108543511085513-intron-Distal4.394493.59909K562EXOSC5
chr211108531111085445-intron-Distal3.5252110.50735K562FUS
chr211105819711058258-intron-Distal3.159453.89560K562UCHL5
chr211108529311085445-intron-Distal4.7134615.96549K562FTO
chr211109860311098698-intron-Distal3.117124.51006K562CSTF2T
chr211107141811071487-intron-Distal4.5375313.98044K562EXOSC5
chr211108518311085238-intron-Distal4.7583114.09130K562CSTF2T
chr211107077011070820-intron-Distal5.4916011.81335K562HNRNPM
chr211103924411039294-intron-Distal3.062093.78791K562RBM15
chr211107153711071593-intron-Distal4.6406410.04913K562HNRNPM
chr211109861711098688-intron-Distal4.753196.14086K562GTF2F1
chr211107121911071264-intron-Distal4.314057.61465K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BAGE2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BAGE2 is not available on ENCORE database.

  • 26 RBPs can affect the levels of BAGE2.  








The Knockdown/knockout RNA-Seq assay for BAGE2 is not available on ENCORE database.





26 RBPs can affect the gene expression of BAGE2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BAGE2ENSG00000187172.11374.01920573.17610-0.615906.135705.34210K562AGGF1
BAGE2ENSG00000187172.11409.70840629.82560-0.620405.463403.97160K562AKAP8
BAGE2ENSG00000187172.11380.54310596.41370-0.648305.544404.60300K562AKAP8L
BAGE2ENSG00000187172.11432.80130625.77760-0.531905.056403.78040K562ATP5C1
BAGE2ENSG00000187172.11404.12180684.98350-0.761308.935306.80750K562CCDC124
BAGE2ENSG00000187172.11203.02480299.95050-0.563102.302801.35620K562DDX3X
BAGE2ENSG00000187172.11507.92820641.79660-0.337502.475101.65310K562DKC1
BAGE2ENSG00000187172.11295.46460210.271100.490602.517101.75800K562EIF3G
BAGE2ENSG00000187172.11963.06460726.478600.406604.521503.33290K562EIF4G2
BAGE2ENSG00000187172.11234.58140325.89060-0.474302.742902.13970K562FXR1
BAGE2ENSG00000187172.11449.16480319.467200.491503.368802.17940K562HNRNPA1
BAGE2ENSG00000187172.11388.65050279.310200.476502.611502.02920K562HNRNPC
BAGE2ENSG00000187172.11487.87810353.778200.463603.394202.40650K562HNRNPU
BAGE2ENSG00000187172.11412.14700632.95110-0.618904.986103.81480K562KIF1C
BAGE2ENSG00000187172.11386.66310605.88420-0.648005.900704.11430K562MAK16
BAGE2ENSG00000187172.11398.95460709.06410-0.829709.725007.82070K562MBNL1
BAGE2ENSG00000187172.11549.10070384.124100.515404.827903.78220K562MTPAP
BAGE2ENSG00000187172.11250.00270483.04420-0.950203.518802.36310K562PABPN1
BAGE2ENSG00000187172.11305.34120426.74670-0.483002.880702.04230K562PPIG
BAGE2ENSG00000187172.11188.18090281.69540-0.582002.588301.86310K562PRPF8
BAGE2ENSG00000187172.11559.35580792.66870-0.503003.633902.70100K562PUF60
BAGE2ENSG00000187172.11383.33580591.49330-0.625804.831504.13930K562PUS1
BAGE2ENSG00000187172.11348.43340576.30900-0.726007.544306.59490K562RBM15
BAGE2ENSG00000187172.11158.73890314.46070-0.986207.900606.71390K562SRSF1
BAGE2ENSG00000187172.11218.93540306.99890-0.487702.602901.81140K562TIA1
BAGE2ENSG00000187172.11547.17650402.669900.442303.001002.11960K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BAGE2 is not available on ENCORE database.





2 RBPs can affect the splicing of BAGE2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSBAGE2ENSG00000187172.11chr21-1105816011058360110581601105832311097545110976460.153000.000310.00246longerK562AQR
MXEBAGE2ENSG00000187172.11chr21-11029597110297171103872711039429110267221102683911047480110475950.239000.003630.089351includedK562DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BAGE2 is not avaliable on ENCORE database.