TM4SF19

General Information

Gene Name       : TM4SF19
Gene ID             : ENSG00000145107.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TM4SF19)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TM4SF19ENSG00000145107.150.000.000.00ENCSR000AEF
HepG2TM4SF19ENSG00000145107.150.060.030.04ENCSR985KAT
K562TM4SF19ENSG00000145107.159.199.999.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TM4SF19 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TM4SF19 RNA is bound by 12 proteins.  







eCLIP assay for TM4SF19 is not avaliable on ENCORE database.





12 proteins are bound to TM4SF19 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3196046398196046457-3'-UTR,intron-Distal3.370263.59765K562ILF3
chr3196046457196046531-3'-UTR,intron-Distal3.926124.59821K562ILF3
chr3196043779196043824-intron-Distal4.576384.07596K562GTF2F1
chr3196043972196044011-intron-Distal5.2732625.64927K562AGGF1
chr3196044732196044811-intron-Distal3.313674.23595K562AKAP8L
chr3196043658196043685-intron-Distal6.5657825.94945HepG2HNRNPL
chr3196061046196061124-intron-Distal4.294864.49655K562CSTF2T
chr3196044149196044193-intron-Distal5.6808013.73667K562HNRNPL
chr3196044618196044671-intron-Distal4.8939125.61916K562AGGF1
chr3196044036196044079-intron-Distal4.9003311.42320HepG2HNRNPL
chr3196044733196044790-intron-Distal4.091944.32762K562GEMIN5
chr3196043761196043827-intron-Distal6.1248842.75942K562HNRNPL
chr3196044829196044888-intron-Distal4.307853.08079HepG2AGGF1
chr3196044713196044816-intron-Distal4.060643.70701HepG2PRPF4
chr3196043765196043828-intron-Distal5.6828555.19268K562AGGF1
chr3196044556196044618-intron-Distal5.2960631.03421K562AGGF1
chr3196044840196044898-intron-Distal3.745363.14687K562CSTF2T
chr3196043685196043708-intron-Distal6.4647723.99670HepG2HNRNPL
chr3196050211196050253-intron-Distal3.410413.06830K562UPF1
chr3196049901196049953-intron-Distal3.786456.40324K562UPF1
chr3196044437196044472-intron-Distal6.2518318.94406K562AGGF1
chr3196045072196045153-5'-UTR,intron-Distal,intron-Proximal3.949953.31905K562NONO
chr3196044558196044613-intron-Distal4.915128.39842K562HNRNPL
chr3196043657196043709-intron-Distal6.0658840.44139K562HNRNPL
chr3196044153196044179-intron-Distal4.838646.36545HepG2HNRNPL
chr3196062068196062106-intron-Distal4.050423.91009K562HNRNPK
chr3196043559196043601-intron-Distal5.5497522.59548K562AGGF1
chr3196044144196044189-intron-Distal4.530414.95161K562GTF2F1
chr3196049415196049471-intron-Distal4.950685.25389K562UPF1
chr3196043361196043388-intron-Distal6.0508114.30686K562AGGF1
chr3196043638196043708-intron-Distal7.5205577.83592K562AGGF1
chr3196043783196043828-intron-Distal5.2483314.10108HepG2HNRNPL
chr3196062649196062778-intron-Distal4.0753814.78352K562CSTF2T
chr3196044548196044689-intron-Distal3.962896.54942K562NONO
chr3196061599196061683-intron-Distal4.291135.59712K562ILF3
chr3196043974196043984-intron-Distal4.840706.37635HepG2HNRNPL
chr3196062505196062563-intron-Distal3.814274.34776K562ILF3
chr3196044432196044484-intron-Distal4.174613.60879K562HNRNPL
chr3196044613196044664-intron-Distal4.991548.57115K562HNRNPL
chr3196044036196044068-intron-Distal4.429384.49526HepG2AGGF1
chr3196043896196043957-intron-Distal4.101366.38153HepG2AGGF1
chr3196043769196043827-intron-Distal3.143804.81996HepG2AGGF1
chr3196043896196043969-intron-Distal4.4801825.72839HepG2HNRNPL
chr3196044731196044887-intron-Distal3.623094.66361K562XRN2
chr3196044849196044882-intron-Distal6.2433915.84732K562AGGF1
chr3196062563196062667-intron-Distal3.810599.31827K562ILF3
chr3196044755196044879-intron-Distal4.435365.25929HepG2GTF2F1
chr3196044749196044829-intron-Distal5.4327436.02675K562AGGF1
chr3196043786196043836-intron-Distal3.543385.92430K562AKAP8L
chr3196044618196044687-intron-Distal3.068603.50009K562CSTF2T
chr3196043653196043697-intron-Distal4.179008.36566HepG2AGGF1
chr3196044716196044829-intron-Distal3.625548.20573HepG2AGGF1
chr3196044576196044673-intron-Distal3.853866.03664K562GTF2F1
chr3196062742196062798-intron-Distal3.069535.26256K562ILF3
chr3196043662196043702-intron-Distal3.664164.10368K562AKAP8L
chr3196043523196043554-intron-Distal5.250439.43003K562HNRNPL
chr3196062045196062129-intron-Distal5.209596.13169K562ILF3
chr3196044841196044889-intron-Distal4.491546.18384K562HNRNPL
chr3196044034196044072-intron-Distal5.9076522.33763K562AGGF1
chr3196044752196044786-intron-Distal4.756674.46189K562GTF2F1
chr3196048205196048328-intron-Distal3.443666.36693K562ILF3
chr3196044594196044682-intron-Distal3.967384.99833K562AKAP8L
chr3196044569196044626-intron-Distal4.218685.66595HepG2AGGF1
chr3196049595196049628-intron-Distal4.252894.07810K562UPF1
chr3196062558196062649-intron-Distal4.1089112.06812K562CSTF2T
chr3196043510196043559-intron-Distal5.6610825.77169K562AGGF1
chr3196061597196061698-intron-Distal3.014945.47824K562CSTF2T
chr3196043910196043954-intron-Distal4.2420315.45634K562HNRNPL
chr3196043652196043699-intron-Distal5.286406.02367K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TM4SF19 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TM4SF19 is not available on ENCORE database.

  • 33 RBPs can affect the levels of TM4SF19.  








The Knockdown/knockout RNA-Seq assay for TM4SF19 is not available on ENCORE database.





33 RBPs can affect the gene expression of TM4SF19 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TM4SF19ENSG00000145107.1112.529800.0000099999.999903.849003.06460HepG2AUH
TM4SF19ENSG00000145107.1114.086300.513804.776803.175102.51810HepG2DDX6
TM4SF19ENSG00000145107.1157.291700.459906.9608013.7180012.25720HepG2RAVER1
TM4SF19ENSG00000145107.1117.725800.0000099999.999905.384804.72180HepG2RBM22
TM4SF19ENSG00000145107.1119.127100.0000099999.999905.587304.94430HepG2SRFBP1
TM4SF19ENSG00000145107.11115.715500.772507.2267037.2740035.69170HepG2SRSF9
TM4SF19ENSG00000145107.1111.825600.0000099999.999902.529101.87890HepG2SUPV3L1
TM4SF19ENSG00000145107.1156.42430111.08010-0.977203.515102.88800K562AGGF1
TM4SF19ENSG00000145107.1164.30520121.26260-0.915103.725302.65220K562ATP5C1
TM4SF19ENSG00000145107.11134.6875068.805500.968903.527102.54260K562BOP1
TM4SF19ENSG00000145107.11130.7405073.160900.837502.998002.18160K562CPSF6
TM4SF19ENSG00000145107.1168.22340124.39910-0.866603.517302.51260K562DKC1
TM4SF19ENSG00000145107.11302.78900184.946500.711103.596302.40010K562EIF3D
TM4SF19ENSG00000145107.11137.9868074.437700.890303.229102.29940K562FMR1
TM4SF19ENSG00000145107.11160.61320106.264400.595802.161801.61500K562FXR1
TM4SF19ENSG00000145107.11107.61080172.63460-0.681902.524701.76110K562HSPD1
TM4SF19ENSG00000273331.18.944000.0000099999.999902.313101.58120K562HSPD1
TM4SF19ENSG00000145107.1180.37980137.42380-0.773702.766601.85800K562MBNL1
TM4SF19ENSG00000145107.11123.4184068.182400.856002.902202.00320K562METAP2
TM4SF19ENSG00000273331.113.087200.0000099999.999903.623802.61460K562METAP2
TM4SF19ENSG00000145107.11422.65620309.106100.451302.813301.67310K562MSI2
TM4SF19ENSG00000145107.11317.77520217.091000.549602.535301.73880K562PCBP3
TM4SF19ENSG00000273331.19.758500.0000099999.999902.404901.63060K562PCBP3
TM4SF19ENSG00000145107.11254.58890147.999400.782502.844202.17170K562PTBP1
TM4SF19ENSG00000145107.11434.54780336.419100.369202.523501.50660K562PUM1
TM4SF19ENSG00000145107.1163.62720111.68760-0.811802.729602.13990K562RBM15
TM4SF19ENSG00000145107.11210.79330141.893600.570902.570801.76270K562RBM22
TM4SF19ENSG00000145107.1133.7123080.34230-1.252903.869102.25570K562RBM25
TM4SF19ENSG00000145107.11296.52320149.325000.989607.410905.54470K562NELFE
TM4SF19ENSG00000145107.11112.24030171.22970-0.609302.160501.44330K562RPS19
TM4SF19ENSG00000145107.1179.41730148.37190-0.901703.596402.35440K562SAFB
TM4SF19ENSG00000145107.11262.90580141.486800.893806.426705.22630K562SF3A3
TM4SF19ENSG00000145107.1150.2310088.07310-0.810102.448001.64530K562SF3B4
TM4SF19ENSG00000145107.11108.12200167.02040-0.627402.494801.71700K562SYNCRIP
TM4SF19ENSG00000145107.11218.31850146.834600.572101.900501.30620K562TARDBP
TM4SF19ENSG00000145107.11261.87850159.486600.715403.479802.12650K562UTP3
TM4SF19ENSG00000145107.11199.82260130.124300.618702.741901.86830K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TM4SF19 is not available on ENCORE database.





1 RBPs can affect the splicing of TM4SF19 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXETM4SF19ENSG00000145107.11chr3-1960511411960513111960542601960544621960504211960508681960651341960652590.280000.000010.000731includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TM4SF19 is not avaliable on ENCORE database.