SAMD1

General Information

Gene Name       : SAMD1
Gene ID             : ENSG00000141858.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SAMD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SAMD1ENSG00000141858.1110.2018.9114.55ENCSR000AEF
HepG2SAMD1ENSG00000141858.1142.9618.1630.56ENCSR985KAT
K562SAMD1ENSG00000141858.1132.9832.8732.92ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SAMD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SAMD1 RNA is bound by 31 proteins.  







eCLIP assay for SAMD1 is not avaliable on ENCORE database.





31 proteins are bound to SAMD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191419880514198907-3'-UTR,intron-Distal3.445075.60553HepG2DDX55
chr191419997614200160-3'-UTR,CDS,intron-Distal5.9488910.07990HepG2FXR2
chr191420000514200166-3'-UTR,CDS,intron-Distal3.0986215.57281K562ZNF800
chr191419902714199091-3'-UTR,intron-Distal3.020478.07122HepG2DDX55
chr191419995314200022-3'-UTR,CDS,intron-Distal3.311467.96329K562UCHL5
chr191419902714199113-3'-UTR,intron-Distal5.9666218.47733K562PCBP1
chr191419888514198933-3'-UTR,intron-Distal3.832017.28182K562PABPC4
chr191420000814200134-3'-UTR,CDS,intron-Distal4.062968.51432HepG2BCLAF1
chr191420000114200126-3'-UTR,CDS,intron-Distal3.853768.50585HepG2GRWD1
chr191419870414198753-3'-UTR,intron-Distal3.234126.40661K562PUM2
chr191419878514198832-3'-UTR,intron-Distal3.6018913.83446HepG2PCBP2
chr191419868114198761-3'-UTR,intron-Distal3.080003.10134K562APOBEC3C
chr191419999514200172-3'-UTR,CDS,intron-Distal3.545219.90957K562SRSF7
chr191420003614200124-3'-UTR,CDS,intron-Distal3.508918.27468K562CPSF6
chr191419906214199116-3'-UTR,intron-Distal3.903939.65896HepG2PCBP2
chr191419992714200175-3'-UTR,CDS,intron-Distal,intron-Proximal4.345608.52875HepG2G3BP1
chr191419872514198777-3'-UTR,intron-Distal3.382386.22789HepG2PCBP2
chr191419913414199234-3'-UTR,CDS,intron-Distal,intron-Proximal3.004174.62806K562IGF2BP2
chr191419909514199134-3'-UTR,intron-Distal3.027433.03854K562IGF2BP2
chr191419916414199252-3'-UTR,CDS,intron-Distal,intron-Proximal4.1041116.19546K562PCBP1
chr191419871814198767-3'-UTR,intron-Distal4.436827.08067K562PTBP1
chr191420012414200174-3'-UTR,CDS,intron-Distal3.020503.80514K562CPSF6
chr191420003314200156-3'-UTR,CDS,intron-Distal3.6808927.67268K562ZNF622
chr191420002214200165-3'-UTR,CDS,intron-Distal3.433096.30771HepG2TRA2A
chr191420002214200150-3'-UTR,CDS,intron-Distal5.0059338.95798K562UCHL5
chr191419920414199252-3'-UTR,CDS,intron-Distal,intron-Proximal3.051854.29277HepG2GRWD1
chr191419916214199212-3'-UTR,intron-Distal,intron-Proximal6.4249012.71401HepG2PCBP2
chr191419877114198874-3'-UTR,intron-Distal4.3036019.32515K562PCBP1
chr191419883214198877-3'-UTR,intron-Distal3.382387.43270HepG2PCBP2
chr191419998814200146-3'-UTR,CDS,intron-Distal4.1718422.43121HepG2PPIG
chr191420004714200131-3'-UTR,CDS,intron-Distal3.138993.00929K562LIN28B
chr191419870214198746-3'-UTR,intron-Distal3.173558.83294K562PABPC4
chr191420000714200037-3'-UTR,CDS,intron-Distal3.649856.23998K562PUM1
chr191419898814199071-3'-UTR,intron-Distal3.217645.03825K562IGF2BP2
chr191420000614200167-3'-UTR,CDS,intron-Distal3.6521026.19288HepG2BUD13
chr191419914014199187-3'-UTR,intron-Distal,intron-Proximal3.775886.84505K562ZNF622
chr191420149514201607-5'-UTR,intron-Distal,intron-Proximal5.1002414.54560HepG2DDX3X
chr191420148014201556-5'-UTR,intron-Distal,intron-Proximal4.8035310.09716K562DDX3X
chr191420118814201309-5'-UTR,CDS,intron-Distal,intron-Proximal4.958016.37401HepG2RBFOX2
chr191420118614201302-5'-UTR,CDS,intron-Distal,intron-Proximal3.4732323.21385K562DROSHA
chr191420119714201275-5'-UTR,CDS,intron-Distal,intron-Proximal4.492843.78533HepG2PTBP1
chr191420118714201248-5'-UTR,CDS,intron-Distal,intron-Proximal3.197126.78260HepG2DDX3X
chr191420119414201317-5'-UTR,CDS,intron-Distal,intron-Proximal4.422223.26022HepG2PRPF4
chr191420120114201292-5'-UTR,CDS,intron-Distal,intron-Proximal3.442575.35256HepG2FTO
chr191419948514199527-CDS,intron-Distal3.823345.37099K562FXR2
chr191420107314201138-CDS,intron-Distal3.091136.16220K562PUM1
chr191420118314201230-CDS,intron-Distal,intron-Proximal3.300525.81611K562GEMIN5
chr191420063614200698-CDS,intron-Distal4.234347.57065K562FXR2
chr191420079314200855-CDS,intron-Distal3.349314.27226HepG2FTO
chr191420102714201065-CDS,intron-Distal3.616305.02671K562PUM1
chr191420102414201094-CDS,intron-Distal3.643676.80697HepG2ZNF800
chr191419973814199783-CDS,intron-Distal,intron-Proximal3.718866.54545K562FMR1
chr191419948614199568-CDS,intron-Distal4.198329.83058HepG2GRWD1
chr191419974214199785-CDS,intron-Distal,intron-Proximal3.080634.55663K562FXR2
chr191420072614200793-CDS,intron-Distal4.068015.69817HepG2FTO
chr191420073114200805-CDS,intron-Distal4.4741813.16150K562PUM1
chr191419948914199530-CDS,intron-Distal3.018964.96117K562YBX3
chr191419948614199531-CDS,intron-Distal5.2571610.32591K562LIN28B
chr191420103714201102-CDS,intron-Distal3.4689010.23829K562ZNF800
chr191420161214201652-intron-Distal,intron-Proximal4.263573.48173K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SAMD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SAMD1 is not available on ENCORE database.

  • 123 RBPs can affect the levels of SAMD1.  








The Knockdown/knockout RNA-Seq assay for SAMD1 is not available on ENCORE database.





123 RBPs can affect the gene expression of SAMD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SAMD1ENSG00000141858.7380.08240510.00550-0.424202.442601.43030HepG2AATF
SAMD1ENSG00000141858.71085.029401381.14280-0.348102.403801.52500HepG2ABCF1
SAMD1ENSG00000141858.7868.00220652.429800.411802.909701.88840HepG2ADAR
SAMD1ENSG00000141858.7515.73990885.68710-0.780203.086402.52880HepG2AKAP1
SAMD1ENSG00000141858.7669.91690863.03910-0.365403.703202.82870HepG2AKAP8L
SAMD1ENSG00000141858.7475.20900732.75720-0.624802.444101.70130HepG2ASCC1
SAMD1ENSG00000141858.7993.433901245.89910-0.326702.690501.30870HepG2ATP5C1
SAMD1ENSG00000141858.7335.16420581.31850-0.794504.509003.38560HepG2BCLAF1
SAMD1ENSG00000141858.7355.47360915.28120-1.3645027.1215025.20940HepG2CALR
SAMD1ENSG00000141858.7890.158301229.29690-0.465702.195801.33610HepG2CCAR1
SAMD1ENSG00000141858.7469.50480696.19380-0.568302.148401.46090HepG2CIRBP
SAMD1ENSG00000141858.7538.21420858.80330-0.6741011.6767010.50140HepG2CKAP4
SAMD1ENSG00000141858.7388.01240657.10040-0.760002.836502.14160HepG2CPSF6
SAMD1ENSG00000141858.7874.77310669.061800.386703.201102.10440HepG2YBX3
SAMD1ENSG00000141858.7290.94900522.38900-0.844405.801903.60240HepG2CSTF2T
SAMD1ENSG00000141858.7696.85760865.69500-0.313003.370002.56640HepG2DAZAP1
SAMD1ENSG00000141858.7307.95970562.21460-0.868408.802007.66260HepG2DDX21
SAMD1ENSG00000141858.7218.60520550.56490-1.3326018.8652016.71750HepG2DDX24
SAMD1ENSG00000141858.7339.70020615.48390-0.857505.243103.53690HepG2DDX27
SAMD1ENSG00000141858.7271.79670498.22140-0.874305.822303.90090HepG2DDX28
SAMD1ENSG00000141858.7520.87110848.26120-0.703602.892802.25510HepG2DDX3X
SAMD1ENSG00000141858.7318.62980657.95780-1.046106.848905.69650HepG2DDX55
SAMD1ENSG00000141858.7528.570701018.81580-0.9467012.8382010.85950HepG2DDX5
SAMD1ENSG00000141858.71165.70200729.050800.677005.478104.63440HepG2DDX6
SAMD1ENSG00000141858.7476.19010633.64000-0.412102.794701.80650HepG2DHX30
SAMD1ENSG00000141858.7495.95990821.87440-0.7287010.863709.70380HepG2DKC1
SAMD1ENSG00000141858.7545.20400800.77470-0.554603.027702.06440HepG2EEF2
SAMD1ENSG00000141858.7433.49320667.43420-0.622605.095503.59070HepG2EFTUD2
SAMD1ENSG00000141858.7291.83920518.05030-0.827905.951404.33520HepG2AGO1
SAMD1ENSG00000141858.7464.62560700.48020-0.592302.104801.58000HepG2EIF2S1
SAMD1ENSG00000141858.7427.52690773.93200-0.856203.567802.84410HepG2EIF4A3
SAMD1ENSG00000141858.7602.16790854.00350-0.504106.072904.92020HepG2EIF4G1
SAMD1ENSG00000141858.7815.275601196.21830-0.553105.868804.33370HepG2ESF1
SAMD1ENSG00000141858.7818.984201128.63390-0.462706.596505.73410HepG2ETF1
SAMD1ENSG00000141858.7605.53390839.39360-0.471104.238003.20350HepG2EWSR1
SAMD1ENSG00000141858.7404.41900535.97780-0.406302.518401.42270HepG2FASTKD2
SAMD1ENSG00000141858.71008.726401394.55740-0.467303.294402.46070HepG2FIP1L1
SAMD1ENSG00000141858.7236.33550658.31030-1.477903.813402.61910HepG2FTO
SAMD1ENSG00000141858.7453.05980724.58660-0.677502.728002.06650HepG2G3BP1
SAMD1ENSG00000141858.7653.43450820.11630-0.327803.165702.12440HepG2HDGF
SAMD1ENSG00000141858.7337.88890655.33000-0.955703.015901.56770HepG2HLTF
SAMD1ENSG00000141858.7492.46030663.25340-0.429602.839702.18490HepG2HNRNPA1
SAMD1ENSG00000141858.7506.19990795.56620-0.652308.846207.35530HepG2HNRNPA2B1
SAMD1ENSG00000141858.7565.19470737.75120-0.384402.457001.80040HepG2HNRNPC
SAMD1ENSG00000141858.71041.72650734.381900.504302.862002.15120HepG2HNRNPK
SAMD1ENSG00000141858.7408.92730710.75230-0.797503.306002.62370HepG2HNRNPLL
SAMD1ENSG00000141858.7586.43610748.60510-0.352203.704602.86810HepG2ILF2
SAMD1ENSG00000141858.7600.72970785.24700-0.386404.320803.05650HepG2KIF1C
SAMD1ENSG00000141858.7781.990401128.37550-0.529005.877204.73950HepG2MSI2
SAMD1ENSG00000141858.7540.68010804.41530-0.573202.147701.58660HepG2NCBP2
SAMD1ENSG00000141858.7417.95710716.05180-0.776703.147402.37950HepG2PABPC4
SAMD1ENSG00000141858.7532.30640725.41360-0.446504.520203.46690HepG2PARN
SAMD1ENSG00000141858.7398.26040645.94310-0.697702.324901.37030HepG2PCBP2
SAMD1ENSG00000141858.7571.85100850.46960-0.572607.641006.43360HepG2PRPF4
SAMD1ENSG00000141858.7234.19060507.25540-1.115008.697307.35180HepG2PRPF8
SAMD1ENSG00000141858.7609.93590774.98370-0.345503.201402.62110HepG2PTBP1
SAMD1ENSG00000141858.7558.91800819.41630-0.552005.279204.48830HepG2PUF60
SAMD1ENSG00000141858.7667.72830869.20300-0.380403.285302.55440HepG2PUM2
SAMD1ENSG00000141858.7603.64130875.00420-0.535607.672906.73160HepG2PUS1
SAMD1ENSG00000141858.7584.13650839.26760-0.522805.284704.46250HepG2QKI
SAMD1ENSG00000141858.7159.76570623.05570-1.963408.900107.68190HepG2RAVER1
SAMD1ENSG00000141858.7496.66690943.32960-0.9255015.8819014.84820HepG2RBM22
SAMD1ENSG00000141858.7495.86780761.71160-0.619306.150005.18040HepG2RBM25
SAMD1ENSG00000141858.7518.82070898.82930-0.792809.005707.88360HepG2RPLP0
SAMD1ENSG00000141858.7311.47570612.56810-0.975803.054302.06420HepG2RPS10
SAMD1ENSG00000141858.7301.69580466.97250-0.630203.467802.57140HepG2RPS3A
SAMD1ENSG00000141858.7253.14610501.75050-0.987005.673004.58430HepG2RRP9
SAMD1ENSG00000141858.7315.27320634.71660-1.0095011.340309.49810HepG2SERBP1
SAMD1ENSG00000141858.7626.14220806.80860-0.365703.248002.61390HepG2SF3B4
SAMD1ENSG00000141858.7604.39680785.64770-0.378404.080503.25190HepG2SLBP
SAMD1ENSG00000141858.7427.73750782.72410-0.871803.546002.65690HepG2SNRNP70
SAMD1ENSG00000141858.7834.656501065.45690-0.352204.144903.56800HepG2SRFBP1
SAMD1ENSG00000141858.7431.39800842.15370-0.9651017.1568016.19210HepG2SRSF1
SAMD1ENSG00000141858.7623.55350819.65280-0.394504.481403.62840HepG2SRSF7
SAMD1ENSG00000141858.7578.74860925.07040-0.6766011.2011010.30390HepG2SSB
SAMD1ENSG00000141858.7568.22510931.20800-0.712605.173203.53880HepG2STAU1
SAMD1ENSG00000141858.7644.00700941.42490-0.547806.026804.66830HepG2SUPT6H
SAMD1ENSG00000141858.7301.31280654.89810-1.120007.580706.55180HepG2SUPV3L1
SAMD1ENSG00000141858.7446.74200757.01660-0.760909.925908.96870HepG2TAF15
SAMD1ENSG00000141858.7460.06450693.05550-0.591102.110901.46600HepG2TARDBP
SAMD1ENSG00000141858.7258.24820438.90120-0.765104.680503.43210HepG2TFIP11
SAMD1ENSG00000141858.7533.37470695.53570-0.383002.148301.41010HepG2TIA1
SAMD1ENSG00000141858.7397.70750712.10690-0.8404011.3142010.42350HepG2TIAL1
SAMD1ENSG00000141858.7909.046101192.78910-0.391902.362001.77700HepG2U2AF1
SAMD1ENSG00000141858.7755.51870993.86130-0.395603.462502.69570HepG2UPF1
SAMD1ENSG00000141858.7549.24740959.52700-0.804906.502305.64860HepG2UTP3
SAMD1ENSG00000141858.7574.74570839.30880-0.546307.772106.73930HepG2ZC3H8
SAMD1ENSG00000141858.7647.665701093.05070-0.755009.219108.36980HepG2ZNF622
SAMD1ENSG00000141858.71514.88150981.295300.626305.182004.44580K562AGGF1
SAMD1ENSG00000141858.71415.889601078.325700.392803.671502.49990K562AKAP8
SAMD1ENSG00000141858.71613.683301021.089800.660103.051102.36440K562AKAP8L
SAMD1ENSG00000141858.71534.745601266.380800.277201.839001.34140K562AQR
SAMD1ENSG00000141858.71327.552601071.383100.309203.218702.22900K562ATP5C1
SAMD1ENSG00000141858.7833.40980653.556500.350603.167402.14350K562BCLAF1
SAMD1ENSG00000141858.71694.307701100.732000.622103.630302.38330K562CNOT7
SAMD1ENSG00000141858.7644.10590495.820000.377402.744601.69240K562CSTF2
SAMD1ENSG00000141858.72017.168301476.535000.450008.062507.02710K562DDX47
SAMD1ENSG00000141858.71428.515901098.718700.378604.025002.94190K562DKC1
SAMD1ENSG00000141858.71256.74120912.979700.460902.294401.38720K562EIF3A
SAMD1ENSG00000141858.7884.19630610.663100.533903.352002.20510K562EIF3D
SAMD1ENSG00000141858.7535.57370317.188200.755607.565606.25660K562EIF3G
SAMD1ENSG00000141858.72008.502801601.267500.326804.551603.35880K562EIF4G2
SAMD1ENSG00000141858.71577.347601208.323400.384403.915002.36850K562EXOSC5
SAMD1ENSG00000141858.71577.878301062.633600.570206.665505.30500K562FIP1L1
SAMD1ENSG00000141858.7490.80980796.47870-0.698504.495802.99540K562FKBP4
SAMD1ENSG00000141858.7916.93210746.219100.297102.474701.89560K562FXR1
SAMD1ENSG00000141858.7106.19260291.73610-1.4580011.105209.50000K562G3BP2
SAMD1ENSG00000141858.71235.43150917.127700.429703.168002.53440K562HNRNPC
SAMD1ENSG00000141858.71102.91390819.066100.429203.943002.55360K562HNRNPF
SAMD1ENSG00000141858.71325.35860874.084500.600403.365802.33150K562HNRNPM
SAMD1ENSG00000141858.71466.708601152.302800.348003.901902.83620K562HNRNPU
SAMD1ENSG00000141858.71763.529001440.631100.291702.183501.47420K562HSPD1
SAMD1ENSG00000141858.7748.28530456.131800.714005.572603.90520K562IGF2BP2
SAMD1ENSG00000141858.71345.195101083.605200.311902.508601.72680K562KIF1C
SAMD1ENSG00000141858.7629.33350479.086500.393402.809901.96300K562MAGOH
SAMD1ENSG00000141858.71301.264701037.298100.327002.433401.44690K562MAK16
SAMD1ENSG00000141858.7626.24590478.070400.389402.237201.41490K562MATR3
SAMD1ENSG00000141858.71572.957401213.915200.373703.798402.70390K562MBNL1
SAMD1ENSG00000141858.71059.67000783.961400.434703.921502.86770K562METAP2
SAMD1ENSG00000141858.71732.58600850.868901.0258012.256709.90780K562NAA15
SAMD1ENSG00000141858.72093.400401604.952800.383208.388407.18910K562NSUN2
SAMD1ENSG00000141858.7591.31210426.215400.472203.308602.23820K562PCBP2
SAMD1ENSG00000141858.71674.029101206.376000.472504.724803.61080K562PPIG
SAMD1ENSG00000141858.7780.74700465.484200.746009.502308.32350K562PTBP1
SAMD1ENSG00000141858.71708.857401012.587400.754902.764602.22170K562PUS1
SAMD1ENSG00000141858.7161.14270278.32260-0.788403.107301.59430K562RAVER1
SAMD1ENSG00000141858.71646.29470986.658200.7385013.4239012.11190K562RBM15
SAMD1ENSG00000141858.7717.49180446.185300.685206.913205.51220K562RBM22
SAMD1ENSG00000141858.7589.46790435.066800.438102.697101.34360K562RBM34
SAMD1ENSG00000141858.71003.57300565.391400.827707.747906.36790K562RPS19
SAMD1ENSG00000141858.7811.14110567.511800.515202.729201.40990K562RRP9
SAMD1ENSG00000141858.71375.984701050.547900.389202.568201.52830K562SAFB
SAMD1ENSG00000141858.7986.05260711.306400.471104.113102.78940K562SRFBP1
SAMD1ENSG00000141858.7613.34360456.362300.426403.063502.32260K562SRSF1
SAMD1ENSG00000141858.7697.65290505.816900.463803.393902.21290K562SRSF4
SAMD1ENSG00000141858.7744.18660537.275600.469902.741701.72920K562SUPV3L1
SAMD1ENSG00000141858.71502.080201182.499900.345003.342202.44040K562SYNCRIP
SAMD1ENSG00000141858.7142.44410286.36240-1.007404.767102.64900K562TAF15
SAMD1ENSG00000141858.7739.99510461.798200.680206.486205.36160K562TARDBP
SAMD1ENSG00000141858.7603.37600445.475000.437602.947602.09940K562TIA1
SAMD1ENSG00000141858.71122.53780790.923500.505104.054502.90600K562TIAL1
SAMD1ENSG00000141858.7605.89850437.309600.470302.752301.66400K562TRA2A
SAMD1ENSG00000141858.7829.50260579.430400.517503.700802.23040K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SAMD1 is not available on ENCORE database.





1 RBPs can affect the splicing of SAMD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSAMD1ENSG00000141858.7chr19-1419969114199817141996911419978814199879142001740.096000.000000.00002longerHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SAMD1 is not avaliable on ENCORE database.