TVP23C-CDRT4

General Information

Gene Name       : TVP23C-CDRT4
Gene ID             : ENSG00000259024.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TVP23C-CDRT4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TVP23C-CDRT4ENSG00000259024.60.000.130.07ENCSR000AEF
HepG2TVP23C-CDRT4ENSG00000259024.69.574.296.93ENCSR985KAT
K562TVP23C-CDRT4ENSG00000259024.61.061.061.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TVP23C-CDRT4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TVP23C-CDRT4 RNA is bound by 43 proteins.  







eCLIP assay for TVP23C-CDRT4 is not avaliable on ENCORE database.





43 proteins are bound to TVP23C-CDRT4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr171534043915340495-3'-UTR,intron-Distal4.859946.07680HepG2LIN28B
chr171534102415341062-3'-UTR,intron-Distal,intron-Proximal3.107204.23325HepG2BCLAF1
chr171534055515340640-3'-UTR,intron-Distal3.540824.25221HepG2LSM11
chr171534124915341416-3'-UTR,CDS,intron-Distal,intron-Proximal3.102985.42438HepG2ZNF800
chr171534054615340597-3'-UTR,intron-Distal3.689094.49013HepG2EIF3H
chr171534352115343573-3'-UTR,CDS,intron-Distal,intron-Proximal3.650844.51739HepG2BCLAF1
chr171545705115457111-5'-UTR,CDS,intron-Distal,intron-Proximal3.625595.60389HepG2PPIG
chr171544913315449193-3'-UTR,5'-UTR,CDS,intron-Distal3.7588016.85915HepG2BCLAF1
chr171540650115406554-5'-UTR,CDS,intron-Distal,intron-Proximal3.965476.44734K562U2AF1
chr171544383315443877-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.9594612.80995HepG2BCLAF1
chr171540646215406556-5'-UTR,CDS,intron-Distal,intron-Proximal4.108297.25163K562U2AF2
chr171544909515449133-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.7037514.52449HepG2BCLAF1
chr171545703815457118-5'-UTR,CDS,intron-Distal,intron-Proximal3.305779.03599HepG2GRWD1
chr171540647515406556-5'-UTR,CDS,intron-Distal,intron-Proximal4.4593920.44056HepG2U2AF2
chr171542733115427386-intron-Distal4.775174.97583HepG2GTF2F1
chr171543280015432916-intron-Distal3.465616.99796HepG2HNRNPL
chr171544761315447697-intron-Distal4.164733.04224HepG2SUGP2
chr171538110715381169-intron-Distal4.216584.24441HepG2ILF3
chr171538805415388100-intron-Distal3.681925.78794HepG2SUGP2
chr171542738815427469-intron-Distal3.4226117.50031K562HNRNPL
chr171537547915375554-intron-Distal3.584186.22956HepG2HNRNPL
chr171537859115378607-intron-Distal4.297878.21761HepG2PTBP1
chr171541963115419686-intron-Distal,intron-Proximal3.680016.50583HepG2TIAL1
chr171538734515387389-intron-Distal3.504573.84025HepG2SUGP2
chr171536888015369056-intron-Distal4.848075.71021K562TARDBP
chr171538766415387713-intron-Distal3.283254.89395HepG2SUGP2
chr171541123815411371-intron-Distal4.6212524.60242HepG2HNRNPL
chr171543574015435831-intron-Distal3.383363.67498K562SAFB2
chr171538807715388214-intron-Distal3.616559.18037HepG2HNRNPL
chr171542733415427388-intron-Distal5.1254418.73900K562HNRNPL
chr171539684515396969-intron-Distal4.505125.90542HepG2PRPF4
chr171541458315414661-intron-Distal4.934496.92461HepG2XRCC6
chr171538615215386210-intron-Distal3.553544.84410HepG2SUGP2
chr171536845115368557-intron-Distal4.443303.06243HepG2SRSF7
chr171536821215368277-intron-Distal3.558884.04775HepG2STAU2
chr171536808415368159-intron-Distal3.550965.39685HepG2CSTF2T
chr171536928915369378-intron-Distal3.787704.74917HepG2PCBP2
chr171541964615419675-intron-Distal,intron-Proximal3.489794.72143K562TIA1
chr171537855815378591-intron-Distal5.218037.79427HepG2PTBP1
chr171536916715369268-intron-Distal3.749024.49607HepG2STAU2
chr171536414015364209-intron-Distal4.062853.63902HepG2CSTF2T
chr171538687215386900-intron-Distal4.394453.84389HepG2SUGP2
chr171539663815396725-intron-Distal4.049104.35952HepG2PRPF4
chr171541026315410313-3'-UTR,intron-Distal4.690575.51162HepG2U2AF2
chr171543909615439183-intron-Distal4.7297416.57539K562CPSF6
chr171536880015368867-intron-Distal5.022826.15718HepG2FUBP3
chr171540715915407260-intron-Distal3.116046.07707HepG2PCBP2
chr171538707915387153-intron-Distal4.883597.34531HepG2SUGP2
chr171541967515419710-intron-Distal,intron-Proximal4.288556.10049K562TIA1
chr171542733515427374-intron-Distal4.6532219.14617HepG2HNRNPL
chr171539077315390872-intron-Distal3.178253.54222HepG2TAF15
chr171538958915389702-intron-Distal4.7269621.79837HepG2QKI
chr171540594115406009-3'-UTR,intron-Distal4.716874.39097HepG2HNRNPUL1
chr171541707415417136-intron-Distal3.104309.28931HepG2RBFOX2
chr171538810015388183-intron-Distal4.185058.66162HepG2SUGP2
chr171536812015368302-intron-Distal3.731865.14628K562TARDBP
chr171536866115368698-intron-Distal3.691334.59124HepG2FUBP3
chr171536787215367998-intron-Distal5.9643812.78069K562EIF4G2
chr171537542915375479-intron-Distal5.540868.04631HepG2HNRNPL
chr171537960415379714-intron-Distal4.963266.10900HepG2HNRNPL
chr171536849315368627-intron-Distal5.777879.27187HepG2FUBP3
chr171541957415419635-intron-Distal,intron-Proximal4.171514.12666HepG2HNRNPK
chr171538708015387138-intron-Distal3.224213.34056HepG2MATR3
chr171543182115431855-intron-Distal3.633875.12612HepG2HNRNPL
chr171544316915443248-intron-Distal4.139313.64484HepG2HNRNPC
chr171541951615419579-intron-Distal4.7140526.28273HepG2QKI
chr171541958715419672-intron-Distal,intron-Proximal4.4407219.44933K562QKI
chr171542732515427440-intron-Distal4.444864.65580K562GTF2F1
chr171541952715419587-intron-Distal3.905884.91563K562QKI
chr171539368015393804-intron-Distal3.848693.22483K562SAFB2
chr171538754215387570-intron-Distal3.400983.35050HepG2SUGP2
chr171544019115440250-intron-Distal,intron-Proximal3.742495.14864K562KHSRP
chr171539685015396955-intron-Distal4.480817.98928HepG2FAM120A
chr171544729215447361-intron-Distal3.658265.54651HepG2SUGP2
chr171535983215359905-intron-Distal3.868703.34609K562TARDBP
chr171541126015411351-intron-Distal4.496177.80895K562QKI
chr171538682415386877-intron-Distal4.8346814.03469HepG2HNRNPM
chr171546654815466620-5'-UTR,intron-Distal3.831166.98486HepG2PRPF4
chr171537291715373016-intron-Distal4.170853.65854HepG2RBFOX2
chr171541978915419859-3'-UTR,intron-Distal3.305543.69481K562UCHL5
chr171540732115407371-intron-Distal4.2655312.69629HepG2RBFOX2
chr171537109615371254-intron-Distal4.571564.92524K562TARDBP
chr171544019115440247-intron-Distal,intron-Proximal3.135346.96146HepG2KHSRP
chr171536862415368740-intron-Distal5.6259512.26573HepG2DKC1
chr171536787215367956-intron-Distal4.116323.31824HepG2TIAL1
chr171540713615407260-intron-Distal3.891597.34197K562HNRNPK
chr171541998615420036-intron-Distal,intron-Proximal4.119873.06084HepG2HNRNPK
chr171543763215437700-intron-Distal3.694063.26999K562KHSRP
chr171539686615396958-intron-Distal3.979594.02670HepG2BCCIP
chr171542733215427390-intron-Distal3.3054514.52431K562AGGF1
chr171540593415405991-3'-UTR,intron-Distal3.091453.64792HepG2HNRNPU
chr171536891315368993-intron-Distal3.393536.11924HepG2FUBP3
chr171540737115407420-intron-Distal3.063045.11683HepG2RBFOX2
chr171538806615388160-intron-Distal3.973259.26703HepG2MATR3
chr171541132615411386-intron-Distal4.4231614.32625HepG2QKI
chr171540108215401209-intron-Distal3.668153.00349HepG2ILF3
chr171540715215407259-intron-Distal4.0383616.25435HepG2HNRNPK
chr171541978015419892-3'-UTR,intron-Distal3.819234.86787HepG2TRA2A
chr171536842415368547-intron-Distal6.6444423.58874HepG2DKC1
chr171538859215388661-intron-Distal4.242218.56181HepG2SUGP2
chr171540727815407298-intron-Distal4.251084.17531HepG2RBFOX2
chr171537966515379722-intron-Distal4.037523.50357HepG2QKI
chr171538798115388027-intron-Distal3.296253.69184HepG2SUGP2
chr171542738415427465-intron-Distal3.5115139.11315HepG2HNRNPL
chr171536785715367948-intron-Distal3.653967.20706HepG2CSTF2T
chr171543185515431882-intron-Distal3.534213.77546HepG2HNRNPL
chr171538845715388510-intron-Distal3.622295.56133HepG2SUGP2
chr171538826215388308-intron-Distal3.681925.78794HepG2SUGP2
chr171541123015411326-intron-Distal5.8000234.60374HepG2QKI
chr171537957915379665-intron-Distal3.496284.23286HepG2QKI
chr171541957915419685-intron-Distal,intron-Proximal4.9107560.12007HepG2QKI
chr171539829015398387-intron-Distal3.567517.60928HepG2PCBP2
chr171544185915441910-intron-Distal4.253013.64484HepG2HNRNPC
chr171536828915368320-intron-Distal4.483813.83835HepG2FUBP3
chr171541968615419717-intron-Distal,intron-Proximal5.082247.37733HepG2TIAL1
chr171541680315416899-intron-Distal3.153313.14580K562ILF3
chr171539390515393955-intron-Distal4.706664.79708HepG2U2AF2
chr171543821515438272-intron-Distal3.336793.45912HepG2HNRNPC
chr171541258215412677-intron-Distal3.099555.12480HepG2HNRNPK
chr171541298915413042-intron-Distal3.916626.35518HepG2HNRNPC
chr171544024715440307-3'-UTR,intron-Distal,intron-Proximal,polyA_site4.0317014.20523HepG2KHSRP
chr171536931315369407-intron-Distal4.061196.08987HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TVP23C-CDRT4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TVP23C-CDRT4 is not available on ENCORE database.

  • 64 RBPs can affect the levels of TVP23C-CDRT4.  








The Knockdown/knockout RNA-Seq assay for TVP23C-CDRT4 is not available on ENCORE database.





64 RBPs can affect the gene expression of TVP23C-CDRT4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TVP23C-CDRT4ENSG00000259024.2459.60490665.85540-0.534805.997005.17000HepG2ACO1
TVP23C-CDRT4ENSG00000259024.2500.87530927.84850-0.889408.428207.55490HepG2AKAP1
TVP23C-CDRT4ENSG00000259024.2441.77270668.88620-0.598506.115605.01640HepG2AKAP8L
TVP23C-CDRT4ENSG00000259024.2557.70670729.38600-0.387202.306201.59480HepG2CIRBP
TVP23C-CDRT4ENSG00000259024.2448.54980665.59340-0.569407.246206.26440HepG2CKAP4
TVP23C-CDRT4ENSG00000259024.2507.35210615.76690-0.279402.199301.44970HepG2DDX19B
TVP23C-CDRT4ENSG00000259024.2458.16860621.02420-0.438802.989602.28750HepG2DDX21
TVP23C-CDRT4ENSG00000259024.2162.44580303.90260-0.903705.751503.87910HepG2DDX52
TVP23C-CDRT4ENSG00000259024.295.82170362.54450-1.919705.745104.45520HepG2EEF2
TVP23C-CDRT4ENSG00000259024.2965.95060733.982800.396102.552501.98310HepG2EIF2S1
TVP23C-CDRT4ENSG00000259024.2192.98470294.27740-0.608703.485802.47840HepG2EIF3D
TVP23C-CDRT4ENSG00000259024.2452.53380586.55480-0.374202.442901.42760HepG2EIF3G
TVP23C-CDRT4ENSG00000259024.2461.13460650.55560-0.496504.021903.01590HepG2EWSR1
TVP23C-CDRT4ENSG00000259024.2187.81250263.06620-0.486102.416801.32680HepG2FAM120A
TVP23C-CDRT4ENSG00000259024.2483.96890353.290700.454002.869901.57640HepG2FKBP4
TVP23C-CDRT4ENSG00000259024.2178.63990262.00770-0.552602.497901.65100HepG2GEMIN5
TVP23C-CDRT4ENSG00000259024.2604.66240402.598800.586703.330101.82270HepG2HNRNPA0
TVP23C-CDRT4ENSG00000259024.2536.87520771.70180-0.523503.905503.11680HepG2IGF2BP2
TVP23C-CDRT4ENSG00000259024.2485.28480238.685701.023604.300503.25880HepG2LARP4
TVP23C-CDRT4ENSG00000259024.2255.85040823.25790-1.6860024.9519023.21850HepG2MATR3
TVP23C-CDRT4ENSG00000259024.2108.18620307.96810-1.509306.185204.66350HepG2METAP2
TVP23C-CDRT4ENSG00000259024.2575.77300842.65370-0.549404.056203.29430HepG2NCBP2
TVP23C-CDRT4ENSG00000259024.2744.35220435.002000.774904.464703.32130HepG2PABPC1
TVP23C-CDRT4ENSG00000259024.2357.54130552.34900-0.627503.473602.31360HepG2PCBP2
TVP23C-CDRT4ENSG00000259024.2195.32740357.44990-0.871808.628307.36750HepG2PRPF4
TVP23C-CDRT4ENSG00000259024.2211.55640580.66670-1.456708.297906.29910HepG2PRPF6
TVP23C-CDRT4ENSG00000259024.2659.59950853.38770-0.371603.478902.88070HepG2PTBP1
TVP23C-CDRT4ENSG00000259024.2542.56800810.97680-0.579902.633902.05190HepG2PUM1
TVP23C-CDRT4ENSG00000259024.2268.49590533.06380-0.989404.488003.60210HepG2RAVER1
TVP23C-CDRT4ENSG00000259024.2554.69140916.45350-0.7244010.237809.38220HepG2RBM22
TVP23C-CDRT4ENSG00000259024.2685.56230949.69800-0.470205.166504.46500HepG2NELFE
TVP23C-CDRT4ENSG00000259024.2108.46560286.37330-1.4007011.2970010.15700HepG2RPS19
TVP23C-CDRT4ENSG00000259024.2204.48850324.07870-0.664302.147901.44760HepG2RRP9
TVP23C-CDRT4ENSG00000259024.2381.03320579.86070-0.605803.131701.50760HepG2RTF1
TVP23C-CDRT4ENSG00000259024.2417.29350196.939301.083206.749705.80870HepG2SAFB2
TVP23C-CDRT4ENSG00000259024.2141.47930287.37530-1.022307.567206.03520HepG2SERBP1
TVP23C-CDRT4ENSG00000259024.23.04550160.92250-5.723505.052103.00430HepG2SFPQ
TVP23C-CDRT4ENSG00000259024.2647.75350927.33220-0.517605.627305.01260HepG2SRSF1
TVP23C-CDRT4ENSG00000259024.2300.52070498.15150-0.729103.898602.45770HepG2SUB1
TVP23C-CDRT4ENSG00000259024.2561.55870857.92590-0.611402.219201.65130HepG2SUCLG1
TVP23C-CDRT4ENSG00000259024.2664.24710833.62160-0.327702.453201.92120HepG2TAF15
TVP23C-CDRT4ENSG00000259024.2421.13350216.776000.958004.755204.05630HepG2TRIM56
TVP23C-CDRT4ENSG00000259024.2470.50810789.80240-0.747302.765601.92900HepG2UBE2L3
TVP23C-CDRT4ENSG00000259024.2136.17400238.74300-0.810003.801503.11670HepG2UTP3
TVP23C-CDRT4ENSG00000259024.2377.35770586.19600-0.635503.690302.46500HepG2XRCC6
TVP23C-CDRT4ENSG00000259024.2164.15880352.77080-1.1036012.6238011.36070HepG2ZC3H8
TVP23C-CDRT4ENSG00000259024.2212.06220356.30720-0.748603.270302.64210K562AQR
TVP23C-CDRT4ENSG00000259024.213.57180121.93580-3.167403.327702.01990K562CCDC124
TVP23C-CDRT4ENSG00000259024.263.8780025.257501.338503.588801.45520K562YBX3
TVP23C-CDRT4ENSG00000259024.214.57770119.67120-3.037203.204401.62490K562DDX19B
TVP23C-CDRT4ENSG00000259024.2104.69180175.36740-0.744203.808902.22930K562DDX27
TVP23C-CDRT4ENSG00000259024.24.3893026.36040-2.586303.558001.54790K562DNAJC2
TVP23C-CDRT4ENSG00000259024.291.6887029.583701.631804.458502.80550K562EXOSC5
TVP23C-CDRT4ENSG00000259024.2138.58250282.85800-1.029308.567307.57290K562FXR1
TVP23C-CDRT4ENSG00000259024.292.55350336.32790-1.8615024.3941021.63900K562MATR3
TVP23C-CDRT4ENSG00000259024.223.61020126.20850-2.418302.341301.51600K562MBNL1
TVP23C-CDRT4ENSG00000259024.2364.21000226.458100.685403.646302.34850K562MSI2
TVP23C-CDRT4ENSG00000259024.2114.7401023.336802.297609.760308.34160K562MTPAP
TVP23C-CDRT4ENSG00000259024.213.0171088.45900-2.764602.553701.71370K562NAA15
TVP23C-CDRT4ENSG00000259024.2486.60950218.333101.156104.354302.59760K562PNPT1
TVP23C-CDRT4ENSG00000259024.261.7084013.671902.174205.877404.48210K562PSIP1
TVP23C-CDRT4ENSG00000259024.2159.56420327.40000-1.036909.713508.52430K562PTBP1
TVP23C-CDRT4ENSG00000259024.2379.29800241.582600.650703.920102.77280K562PUM2
TVP23C-CDRT4ENSG00000259024.2182.23860259.24270-0.508502.714101.86780K562SF3B4
TVP23C-CDRT4ENSG00000259024.290.5106026.228301.786904.642603.46730K562SRPK2
TVP23C-CDRT4ENSG00000259024.2351.80570202.249200.798503.394101.73250K562SUCLG1
TVP23C-CDRT4ENSG00000259024.2109.94830249.59440-1.182807.841006.47870K562U2AF2
TVP23C-CDRT4ENSG00000259024.2153.6001027.470102.483106.203805.17950K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TVP23C-CDRT4 is not available on ENCORE database.





2 RBPs can affect the splicing of TVP23C-CDRT4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETVP23C-CDRT4ENSG00000259024.2chr17-1539149415391648153435241534359915443746154438750.483000.000510.00794includedHepG2U2AF2
SETVP23C-CDRT4ENSG00000259024.2chr17-1545308515453161154503721545046215456998154571430.211000.000050.01854includedK562APOBEC3C

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TVP23C-CDRT4 is not avaliable on ENCORE database.