RTEL1-TNFRSF6B

General Information

Gene Name : RTEL1-TNFRSF6B
Gene ID : ENSG00000026036.22
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RTEL1-TNFRSF6B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RTEL1-TNFRSF6B	ENSG00000026036.22	0.03	0.32	0.17	ENCSR000AEF
HepG2	RTEL1-TNFRSF6B	ENSG00000026036.22	6.38	1.15	3.76	ENCSR985KAT
K562	RTEL1-TNFRSF6B	ENSG00000026036.22	2.36	0.82	1.59	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RTEL1-TNFRSF6B is not avaliable on ENCORE database.

Proteins bound to RNA

RTEL1-TNFRSF6B RNA is bound by 46 proteins.

CanvasJS.com

eCLIP assay for RTEL1-TNFRSF6B is not avaliable on ENCORE database.

46 proteins are bound to RTEL1-TNFRSF6B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	62299394	62299467	+	intron-Distal	7.56849	100.02992	HepG2	RBFOX2
chr20	62299321	62299372	+	intron-Distal	7.44962	90.78052	HepG2	RBFOX2
chr20	62299372	62299394	+	intron-Distal	7.33714	85.82654	HepG2	RBFOX2
chr20	62299333	62299479	+	intron-Distal	6.18200	80.98330	K562	DROSHA
chr20	62299098	62299182	+	intron-Distal	8.10391	77.95563	HepG2	RBFOX2
chr20	62318657	62318699	+	intron-Distal	8.41849	64.39015	HepG2	XPO5
chr20	62318638	62318657	+	intron-Distal	8.41849	64.39015	HepG2	XPO5
chr20	62324632	62324755	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.97387	57.50001	HepG2	AGGF1
chr20	62299293	62299321	+	intron-Distal	7.72879	57.22477	HepG2	RBFOX2
chr20	62299494	62299558	+	intron-Distal	5.75503	54.52034	HepG2	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 398 entries

eCLIP assay for RTEL1-TNFRSF6B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RTEL1-TNFRSF6B is not available on ENCORE database.
99 RBPs can affect the levels of RTEL1-TNFRSF6B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RTEL1-TNFRSF6B is not available on ENCORE database.

99 RBPs can affect the gene expression of RTEL1-TNFRSF6B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RTEL1-TNFRSF6B	ENSG00000026036.16	615.41640	166.15320	1.88890	45.27200	43.06540	HepG2	HNRNPU
RTEL1-TNFRSF6B	ENSG00000026036.16	904.21610	223.95580	2.01340	35.81030	33.96930	HepG2	PUF60
RTEL1-TNFRSF6B	ENSG00000026036.16	1066.04460	286.37670	1.89620	34.67000	32.63710	HepG2	NCBP2
RTEL1-TNFRSF6B	ENSG00000026036.16	871.14870	331.63620	1.39320	32.95470	31.32010	HepG2	SF3B4
RTEL1-TNFRSF6B	ENSG00000026036.16	879.27310	261.53370	1.74920	30.56000	28.51150	HepG2	HNRNPK
RTEL1-TNFRSF6B	ENSG00000026036.16	610.87060	237.73080	1.36140	28.89030	27.38080	HepG2	PUM1
RTEL1-TNFRSF6B	ENSG00000026036.16	625.57280	251.47580	1.31470	25.54120	23.96460	HepG2	SUCLG1
RTEL1-TNFRSF6B	ENSG00000026036.16	884.87690	256.14430	1.78840	25.77300	23.07650	HepG2	CCAR1
RTEL1-TNFRSF6B	ENSG00000026036.16	788.91150	257.93300	1.61280	24.46600	22.56740	HepG2	G3BP1
RTEL1-TNFRSF6B	ENSG00000026036.16	526.11960	214.72190	1.29280	22.57040	20.95170	HepG2	SLBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 110 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RTEL1-TNFRSF6B is not available on ENCORE database.

20 RBPs can affect the splicing of RTEL1-TNFRSF6B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62323094	62324356	62323094	62323190	62324157	62324356	0.16200	0.00000	0.00323	included	HepG2	HNRNPM
RI	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62323094	62324356	62323094	62323190	62324157	62324356	0.18400	0.00000	0.00000	included	HepG2	U2AF1
SE	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62306624	62306788	62305298	62305446	62309497	62309699	-0.19400	0.00002	0.00173	excluded	HepG2	HNRNPU
RI	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62323094	62324356	62323094	62323190	62324157	62324356	0.10000	0.00002	0.00061	included	HepG2	SF3A3
RI	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62323094	62324356	62323094	62323190	62324157	62324356	0.24200	0.00004	0.00032	included	K562	AQR
A5SS	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62326680	62327003	62326680	62326833	62327130	62327207	0.65100	0.00005	0.03761	longer	K562	IGF2BP2
RI	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62323094	62324356	62323094	62323190	62324157	62324356	0.20300	0.00015	0.09191	included	K562	GTF2F1
RI	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62326970	62327207	62326970	62327003	62327130	62327207	0.09100	0.00016	0.00125	included	K562	AQR
A3SS	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62293114	62293296	62293202	62293296	62292650	62292849	-0.09700	0.00030	0.03026	shorter	HepG2	HNRNPK
A5SS	RTEL1-TNFRSF6B	ENSG00000026036.16	chr20	+	62305298	62305446	62305298	62305404	62309497	62309536	-0.76500	0.00035	0.04593	shorter	HepG2	FTO

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RTEL1-TNFRSF6B

General Information

Functions

Localization

Domains (AlphaFold: RTEL1-TNFRSF6B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RTEL1-TNFRSF6B is not avaliable on ENCORE database.

46 proteins are bound to RTEL1-TNFRSF6B RNA:

eCLIP assay for RTEL1-TNFRSF6B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RTEL1-TNFRSF6B is not available on ENCORE database.

99 RBPs can affect the gene expression of RTEL1-TNFRSF6B :

The Knockdown/knockout RNA-Seq assay for RTEL1-TNFRSF6B is not available on ENCORE database.

20 RBPs can affect the splicing of RTEL1-TNFRSF6B :

The Knockdown/knockout RNA-Seq assay for RTEL1-TNFRSF6B is not avaliable on ENCORE database.