ERBB3

General Information

Gene Name : ERBB3
Gene ID : ENSG00000065361.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ERBB3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ERBB3	ENSG00000065361.15	0.05	0.02	0.04	ENCSR000AEF
HepG2	ERBB3	ENSG00000065361.15	109.44	108.08	108.76	ENCSR985KAT
K562	ERBB3	ENSG00000065361.15	2.88	3.62	3.25	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ERBB3 is not avaliable on ENCORE database.

Proteins bound to RNA

ERBB3 RNA is bound by 39 proteins.

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eCLIP assay for ERBB3 is not avaliable on ENCORE database.

39 proteins are bound to ERBB3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	56474115	56474167	+	5'-UTR,CDS,intron-Proximal	5.43097	400.00000	HepG2	DDX3X
chr12	56474008	56474091	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.07817	400.00000	HepG2	DDX3X
chr12	56477532	56477592	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.15940	58.95098	HepG2	DDX3X
chr12	56495939	56495986	+	3'-UTR,intron-Distal	4.92237	44.67405	HepG2	PCBP2
chr12	56495877	56495939	+	3'-UTR,intron-Distal	4.45937	39.75392	HepG2	PCBP2
chr12	56489114	56489199	+	intron-Distal,intron-Proximal	5.15100	34.37714	HepG2	EFTUD2
chr12	56481720	56481785	+	intron-Distal,intron-Proximal	5.10577	31.87115	HepG2	EFTUD2
chr12	56495904	56495974	+	3'-UTR,intron-Distal	4.20802	31.02453	HepG2	HNRNPK
chr12	56487774	56487870	+	intron-Distal,intron-Proximal	6.72234	29.85431	HepG2	RBFOX2
chr12	56494825	56494907	+	3'-UTR,CDS,intron-Proximal	3.55688	29.26904	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 139 entries

eCLIP assay for ERBB3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ERBB3 is not available on ENCORE database.
159 RBPs can affect the levels of ERBB3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ERBB3 is not available on ENCORE database.

159 RBPs can affect the gene expression of ERBB3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ERBB3	ENSG00000065361.10	3060.76970	15086.68840	-2.30130	230.79510	227.66480	HepG2	RBM22
ERBB3	ENSG00000065361.10	4872.89350	17916.14810	-1.87840	211.04170	208.29240	HepG2	NELFE
ERBB3	ENSG00000065361.10	5301.81270	17494.55470	-1.72230	210.22170	207.84370	HepG2	SRSF1
ERBB3	ENSG00000065361.10	5334.20150	17039.70030	-1.67560	205.87370	203.33450	HepG2	SRFBP1
ERBB3	ENSG00000065361.10	4354.67710	14794.21640	-1.76440	196.32870	193.95760	HepG2	SSB
ERBB3	ENSG00000065361.10	3227.10330	10476.06160	-1.69880	185.78410	182.95030	HepG2	ACO1
ERBB3	ENSG00000065361.10	1801.75550	18991.78140	-3.39790	155.72150	152.91230	HepG2	AKAP1
ERBB3	ENSG00000065361.10	5873.31370	16760.79320	-1.51280	144.08850	141.09980	HepG2	SF3B4
ERBB3	ENSG00000065361.10	4425.46060	11253.40640	-1.34650	141.77510	138.64040	HepG2	ZC3H8
ERBB3	ENSG00000065361.10	5652.56210	16098.47040	-1.50990	135.43540	133.11830	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 211 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ERBB3 is not available on ENCORE database.

31 RBPs can affect the splicing of ERBB3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	ERBB3	ENSG00000065361.10	chr12	+	56487547	56487680	56487128	56487334	56487882	56487973	-0.29900	0.00000	excluded	HepG2	U2AF1
SE	ERBB3	ENSG00000065361.10	chr12	+	56486769	56486860	56486530	56486604	56487128	56487334	-0.12100	0.00000	excluded	HepG2	U2AF1
SE	ERBB3	ENSG00000065361.10	chr12	+	56489731	56489931	56489358	56489590	56490286	56490316	0.14600	0.00000	included	HepG2	HNRNPK
SE	ERBB3	ENSG00000065361.10	chr12	+	56487547	56487680	56487128	56487334	56487882	56487973	-0.50400	0.00000	excluded	HepG2	U2AF2
SE	ERBB3	ENSG00000065361.10	chr12	+	56492283	56492359	56491568	56491724	56492542	56492689	-0.06200	0.00000	excluded	HepG2	U2AF2
SE	ERBB3	ENSG00000065361.10	chr12	+	56488820	56488947	56488185	56488340	56489040	56489094	0.05800	0.00000	included	HepG2	SF3A3
SE	ERBB3	ENSG00000065361.10	chr12	+	56487547	56487680	56487128	56487334	56487882	56487973	-0.09400	0.00000	excluded	HepG2	SF3B4
A5SS	ERBB3	ENSG00000065361.10	chr12	+	56490892	56491101	56490892	56491014	56491568	56491724	0.07500	0.00000	longer	HepG2	SRSF1
RI	ERBB3	ENSG00000065361.10	chr12	+	56487882	56488340	56487882	56487973	56488185	56488340	0.27700	0.00004	included	HepG2	DDX59
RI	ERBB3	ENSG00000065361.10	chr12	+	56487882	56488340	56487882	56487973	56488185	56488340	0.17100	0.00007	included	HepG2	TBRG4

Showing 1 to 10 of 70 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ERBB3

General Information

Functions

Localization

Domains (AlphaFold: ERBB3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ERBB3 is not avaliable on ENCORE database.

39 proteins are bound to ERBB3 RNA:

eCLIP assay for ERBB3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ERBB3 is not available on ENCORE database.

159 RBPs can affect the gene expression of ERBB3 :

The Knockdown/knockout RNA-Seq assay for ERBB3 is not available on ENCORE database.

31 RBPs can affect the splicing of ERBB3 :

The Knockdown/knockout RNA-Seq assay for ERBB3 is not avaliable on ENCORE database.