WHSC1

General Information

Gene Name : WHSC1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: WHSC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for WHSC1 is not avaliable on ENCORE database.

Proteins bound to RNA

WHSC1 RNA is bound by 81 proteins.

CanvasJS.com

eCLIP assay for WHSC1 is not avaliable on ENCORE database.

81 proteins are bound to WHSC1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	1976412	1976424	+	intron-Distal	7.25641	400.00000	HepG2	DKC1
chr4	1976420	1976428	+	intron-Distal	4.31979	400.00000	HepG2	SF3A3
chr4	1976429	1976485	+	intron-Distal	4.26469	400.00000	HepG2	SF3A3
chr4	1976391	1976399	+	intron-Distal	7.48244	400.00000	HepG2	DKC1
chr4	1976365	1976403	+	intron-Distal	4.74577	400.00000	HepG2	PTBP1
chr4	1976362	1976400	+	intron-Distal	5.18968	400.00000	HepG2	SF3A3
chr4	1976443	1976460	+	intron-Distal	3.23219	400.00000	K562	SMNDC1
chr4	1976455	1976460	+	intron-Distal	6.90513	400.00000	HepG2	DKC1
chr4	1976464	1976486	+	intron-Distal	7.19865	400.00000	HepG2	DKC1
chr4	1976412	1976433	+	intron-Distal	4.64731	400.00000	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 437 entries

eCLIP assay for WHSC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for WHSC1 is not available on ENCORE database.
125 RBPs can affect the levels of WHSC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for WHSC1 is not available on ENCORE database.

125 RBPs can affect the gene expression of WHSC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
WHSC1	ENSG00000109685.13	1971.51170	3527.94130	-0.83950	43.50680	42.01380	HepG2	ZNF622
WHSC1	ENSG00000109685.13	1942.53910	3328.59500	-0.77700	34.52420	32.77430	HepG2	CKAP4
WHSC1	ENSG00000109685.13	2080.88680	3797.11970	-0.86770	34.39610	32.54190	HepG2	SRSF5
WHSC1	ENSG00000109685.13	1288.77340	2632.88650	-1.03060	28.20820	26.27580	HepG2	CALR
WHSC1	ENSG00000109685.13	2478.93950	4310.42510	-0.79810	26.01730	24.75320	HepG2	RBM22
WHSC1	ENSG00000109685.13	1268.92780	2719.77180	-1.09990	25.12280	23.61560	HepG2	BOP1
WHSC1	ENSG00000109685.13	1826.52080	2930.20760	-0.68190	20.78570	19.20520	HepG2	SRSF7
WHSC1	ENSG00000109685.13	1485.96590	2589.70000	-0.80140	18.69180	17.60470	HepG2	TIAL1
WHSC1	ENSG00000109685.13	1660.42750	2612.65760	-0.65400	18.82250	17.52110	HepG2	TRIM56
WHSC1	ENSG00000109685.13	1578.43960	2367.74130	-0.58500	17.80920	16.29200	HepG2	DNAJC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 139 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for WHSC1 is not available on ENCORE database.

28 RBPs can affect the splicing of WHSC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	WHSC1	ENSG00000109685.13	chr4	+	1954831	1954914	1953834	1953958	1955050	1955251	0.26000	0.00013	included	K562	SF3B4
SE	WHSC1	ENSG00000109685.13	chr4	+	1941380	1941505	1936870	1936989	1952798	1952930	-0.29400	0.00000	excluded	K562	AKAP8L
SE	WHSC1	ENSG00000109685.13	chr4	+	1913817	1913921	1905942	1906105	1918597	1918764	0.07300	0.00000	included	K562	FXR1
SE	WHSC1	ENSG00000109685.13	chr4	+	1941380	1941505	1936870	1936989	1952798	1952930	-0.36000	0.00000	excluded	K562	PUS1
SE	WHSC1	ENSG00000109685.13	chr4	+	1944065	1944292	1941380	1941505	1952798	1952930	0.20900	0.00018	included	HepG2	HNRNPL
SE	WHSC1	ENSG00000109685.13	chr4	+	1944065	1944292	1941380	1941505	1952798	1952930	0.21000	0.00000	included	K562	HNRNPL
SE	WHSC1	ENSG00000109685.13	chr4	+	1941380	1941505	1936892	1936989	1952798	1952930	-0.24900	0.00019	excluded	HepG2	SF3A3
SE	WHSC1	ENSG00000109685.13	chr4	+	1913817	1913921	1905942	1906105	1918597	1918764	0.14800	0.00069	included	HepG2	SUPV3L1
SE	WHSC1	ENSG00000109685.13	chr4	+	1941380	1941505	1936870	1936989	1952798	1952930	-0.28900	0.00003	excluded	K562	UTP18
SE	WHSC1	ENSG00000109685.13	chr4	+	1940177	1940259	1936870	1936989	1941380	1941505	-0.13200	0.00000	excluded	K562	HNRNPU

Showing 1 to 10 of 49 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

WHSC1

General Information

Functions

Localization

Domains (AlphaFold: WHSC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for WHSC1 is not avaliable on ENCORE database.

81 proteins are bound to WHSC1 RNA:

eCLIP assay for WHSC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for WHSC1 is not available on ENCORE database.

125 RBPs can affect the gene expression of WHSC1 :

The Knockdown/knockout RNA-Seq assay for WHSC1 is not available on ENCORE database.

28 RBPs can affect the splicing of WHSC1 :

The Knockdown/knockout RNA-Seq assay for WHSC1 is not avaliable on ENCORE database.