RP11-44N21.4

General Information

Gene Name       : RP11-44N21.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-44N21.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-44N21.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-44N21.4 RNA is bound by 23 proteins.  







eCLIP assay for RP11-44N21.4 is not avaliable on ENCORE database.





23 proteins are bound to RP11-44N21.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14105626493105626554-intron-Distal4.841634.65580K562GTF2F1
chr14105641609105641685-intron-Distal4.206423.37414K562CSTF2T
chr14105625975105626081-intron-Distal9.1039978.23531K562DROSHA
chr14105628813105628875-intron-Distal6.88523400.00000K562AATF
chr14105629206105629251-intron-Distal4.168003.99137K562NONO
chr14105625634105625675-intron-Distal3.359903.30889K562GTF2F1
chr14105627343105627440-intron-Distal4.485209.15743K562EWSR1
chr14105626602105626644-intron-Distal3.927603.10925K562DGCR8
chr14105633267105633321-intron-Distal4.396424.27402K562CSTF2T
chr14105631247105631291-intron-Distal4.452853.71802K562RBFOX2
chr14105631256105631344-intron-Distal5.068609.14519K562CSTF2T
chr14105625398105625440-intron-Distal4.531818.94227K562AATF
chr14105628979105629016-intron-Distal4.623444.01285K562GEMIN5
chr14105628928105629022-intron-Distal4.2316117.27140K562FUS
chr14105630672105630714-intron-Distal5.8242910.72676K562AATF
chr14105630658105630717-intron-Distal4.644935.81141K562CSTF2T
chr14105633562105633636-intron-Distal4.553185.42636K562NONO
chr14105640124105640191-intron-Distal,intron-Proximal4.344983.71802K562RBFOX2
chr14105618599105618695-CDS,intron-Distal,intron-Proximal4.532208.05832K562SF3B4
chr14105628982105629022-intron-Distal7.3101478.23511K562AATF
chr14105625632105625712-intron-Distal5.185806.31097K562FAM120A
chr14105631540105631620-intron-Distal4.150459.11485K562EWSR1
chr14105633332105633422-intron-Distal4.919437.98022K562RBFOX2
chr14105632444105632506-intron-Distal3.387654.57350K562RBFOX2
chr14105628877105629016-intron-Distal6.1070126.23580K562DGCR8
chr14105629618105629643-intron-Distal4.633405.27179K562EWSR1
chr14105625385105625457-intron-Distal4.705335.60464K562CSTF2T
chr14105633591105633646-intron-Distal5.097486.99055K562EWSR1
chr14105626600105626641-intron-Distal4.922475.62492K562EIF4G2
chr14105627982105628066-intron-Distal4.705887.00800K562CSTF2T
chr14105626832105626877-intron-Distal3.988373.70058K562CSTF2T
chr14105629213105629258-intron-Distal3.483796.15110K562EWSR1
chr14105628823105628878-intron-Distal3.122473.00209K562FUS
chr14105626491105626585-intron-Distal5.4707616.39790K562RBFOX2
chr14105628881105628986-intron-Distal5.1098015.14095K562FAM120A
chr14105628631105628702-intron-Distal3.442555.01300K562RBFOX2
chr14105623157105623209-intron-Distal4.244004.42197K562EWSR1
chr14105627965105628055-intron-Distal6.0109314.01891K562RBFOX2
chr14105625184105625220-intron-Distal4.215024.04290K562CSTF2T
chr14105641074105641143-intron-Distal4.216054.63077K562RBFOX2
chr14105631560105631629-intron-Distal3.461565.05268K562FUS
chr14105639610105639680-intron-Distal3.247415.43415K562RBFOX2
chr14105640856105640930-intron-Distal4.105604.48935K562CSTF2T
chr14105625983105626054-intron-Distal4.160356.07385K562GTF2F1
chr14105641074105641147-intron-Distal4.350095.01722K562CSTF2T
chr14105626600105626643-intron-Distal4.835444.06667K562GTF2F1
chr14105625828105625920-intron-Distal4.6749410.83333K562DDX6
chr14105626511105626523-intron-Distal4.361243.58113K562EWSR1
chr14105633374105633425-intron-Distal3.213623.74023K562FUS
chr14105626513105626555-intron-Distal4.801964.67055K562EIF4G2
chr14105628890105628980-intron-Distal4.424758.91366K562SLTM
chr14105629209105629268-intron-Distal4.464819.53136K562RBFOX2
chr14105628879105629029-intron-Distal6.1512133.91103K562EWSR1
chr14105628805105628872-intron-Distal5.7200811.72800K562DGCR8
chr14105633726105633804-intron-Distal4.281614.96496K562NONO
chr14105628815105628879-intron-Distal4.8012013.42861K562EWSR1
chr14105626996105627039-intron-Distal5.189819.48522K562RBFOX2
chr14105628178105628223-intron-Distal3.258015.36345K562EWSR1
chr14105625626105625704-intron-Distal4.589499.15743K562EWSR1
chr14105633352105633438-intron-Distal4.948646.15490K562FTO
chr14105633425105633472-intron-Distal3.285823.74023K562FUS
chr14105633413105633468-intron-Distal4.081838.42501K562TIA1
chr14105626599105626642-intron-Distal4.732364.46951K562FAM120A
chr14105625873105625927-intron-Distal6.1451023.37787K562DROSHA
chr14105624913105625019-intron-Distal3.871613.15856K562FUS
chr14105632018105632117-intron-Distal3.312374.18745K562RBFOX2
chr14105625914105625949-intron-Distal6.0061214.92136K562RBFOX2
chr14105630973105631021-intron-Distal4.351863.43867K562CSTF2T
chr14105628867105629025-intron-Distal3.5274013.24892K562CSTF2T
chr14105630375105630412-intron-Distal4.126613.11728K562FAM120A
chr14105633732105633800-intron-Distal3.877757.06202K562AATF
chr14105639608105639674-intron-Distal4.506293.48173K562GTF2F1
chr14105629416105629457-intron-Distal5.014956.99055K562EWSR1
chr14105628809105628874-intron-Distal6.2373915.84543K562DROSHA
chr14105628878105628928-intron-Distal5.4499110.96970K562FUS
chr14105641513105641570-intron-Distal4.507675.98323K562DROSHA
chr14105633225105633313-intron-Distal4.352805.53111K562FUS
chr14105640262105640317-intron-Distal4.103953.30336K562EWSR1
chr14105632514105632588-intron-Distal4.645186.57830K562RBFOX2
chr14105630669105630737-intron-Distal4.418986.92249K562EWSR1
chr14105626081105626149-intron-Distal7.2130441.34349K562DROSHA
chr14105631257105631333-intron-Distal4.348464.38082K562SMNDC1
chr14105639594105639671-CDS,intron-Distal4.103113.70058K562CSTF2T
chr14105626600105626643-intron-Distal6.6290011.91656K562AATF
chr14105621896105621934-CDS,intron-Distal,intron-Proximal3.170813.17151K562UCHL5
chr14105641613105641664-intron-Distal3.797603.16310HepG2CSTF2T
chr14105632743105632788-intron-Distal4.115484.27402K562CSTF2T
chr14105626597105626636-intron-Distal4.835914.89579K562DDX6
chr14105630673105630699-intron-Distal5.4227110.12417K562DROSHA
chr14105633246105633305-intron-Distal4.348483.98553K562NONO
chr14105626261105626349-intron-Distal7.4168546.81681K562DROSHA
chr14105626288105626392-intron-Distal5.289649.83668K562FASTKD2
chr14105630362105630424-intron-Distal3.856706.34048K562CSTF2T
chr14105633348105633398-intron-Distal4.759914.89579K562DDX6
chr14105628875105628931-intron-Distal7.60756400.00000K562AATF
chr14105626281105626351-intron-Distal5.9522911.05891K562RBFOX2
chr14105624958105625007-intron-Distal4.449317.12877K562RBFOX2
chr14105625970105626043-intron-Distal5.030638.61093K562CSTF2T
chr14105626488105626561-intron-Distal6.9162438.06555K562DROSHA
chr14105628817105628878-intron-Distal3.857823.22046K562AKAP8L
chr14105630362105630425-intron-Distal3.797796.88394K562RBFOX2
chr14105623147105623249-intron-Distal3.958094.95463K562GTF2F1
chr14105626593105626644-intron-Distal5.202155.27179K562EWSR1
chr14105630928105631009-intron-Distal3.704465.37976K562NONO
chr14105633728105633803-intron-Distal3.467383.37274K562AKAP8L
chr14105626585105626643-intron-Distal6.1678415.80128K562RBFOX2
chr14105625887105625944-intron-Distal4.7332110.02297K562EIF4G2
chr14105632719105632761-intron-Distal4.655547.87619K562DROSHA
chr14105628813105628867-intron-Distal3.308135.87066K562CSTF2T
chr14105624617105624668-intron-Distal3.941735.00766K562EWSR1
chr14105628895105628960-intron-Distal3.919318.55399K562GEMIN5
chr14105628905105628995-intron-Distal3.633677.74427K562EIF4G2
chr14105629225105629256-intron-Distal3.988373.70058K562CSTF2T
chr14105633329105633368-intron-Distal5.944908.47410K562DROSHA
chr14105625834105625933-intron-Distal5.251999.75980K562CSTF2T
chr14105625834105625873-intron-Distal7.4162419.17823K562DROSHA
chr14105628874105629035-intron-Distal5.85170400.00000K562DROSHA
chr14105629545105629608-intron-Distal5.446209.60017K562EWSR1
chr14105625989105626070-intron-Distal5.759916.74617K562DDX6
chr14105625376105625438-intron-Distal4.792206.14086K562GTF2F1
chr14105640267105640340-intron-Distal3.897336.50806K562RBFOX2
chr14105628940105629015-intron-Distal3.133105.49351K562NONO
chr14105629312105629418-intron-Distal7.3030118.53411K562DROSHA
chr14105630695105630723-intron-Distal4.409423.17679K562DDX52
chr14105633413105633478-intron-Distal3.922717.85210K562DROSHA
chr14105629717105629742-intron-Distal4.688915.27179K562EWSR1
chr14105632563105632605-intron-Distal4.255544.75311K562CSTF2T
chr14105633275105633310-intron-Distal5.661736.22843K562DROSHA
chr14105631456105631560-intron-Distal3.061455.05197K562FUS
chr14105624169105624232-intron-Distal,intron-Proximal5.272935.19464K562DROSHA
chr14105631524105631602-intron-Distal4.895598.03474K562CSTF2T
chr14105633423105633468-intron-Distal4.429998.59510K562EWSR1
chr14105633595105633648-intron-Distal4.386296.91251K562AATF
chr14105625833105625943-intron-Distal5.592889.43216K562GTF2F1
chr14105625371105625464-intron-Distal4.5053113.52408K562RBFOX2
chr14105628822105628881-intron-Distal4.049025.46639K562FAM120A
chr14105633732105633831-intron-Distal6.6429915.15999K562DROSHA
chr14105625526105625564-intron-Distal4.811925.69037K562RBFOX2
chr14105632752105632793-intron-Distal5.6927810.72676K562AATF
chr14105629199105629312-intron-Distal6.1960923.16720K562DROSHA
chr14105625997105626077-intron-Distal5.551927.07160K562EIF4G2
chr14105624963105625018-intron-Distal4.600614.94603K562CSTF2T
chr14105628931105628982-intron-Distal7.87766400.00000K562AATF
chr14105628819105628877-intron-Distal4.4151410.57616K562RBFOX2
chr14105631497105631540-intron-Distal5.031766.12846K562EWSR1
chr14105632334105632380-intron-Distal5.022207.85700K562EWSR1
chr14105626596105626643-intron-Distal5.106229.08542K562CSTF2T
chr14105628812105628866-intron-Distal3.528724.25264K562NONO
chr14105625621105625660-intron-Distal6.5607724.15972K562DROSHA
chr14105631257105631370-intron-Distal5.1836514.57964K562EWSR1
chr14105628543105628631-intron-Distal4.034618.99830K562RBFOX2
chr14105630364105630421-intron-Distal6.3989725.56038K562DROSHA
chr14105618495105618614-CDS,intron-Distal,intron-Proximal5.2437411.01364K562DDX24
chr14105625791105625912-intron-Distal6.2922831.47834K562RBFOX2
chr14105629413105629426-intron-Distal3.936823.70058K562CSTF2T
chr14105633338105633382-intron-Distal4.185574.04290K562CSTF2T
chr14105628877105629019-intron-Distal4.9743533.86913K562RBFOX2
chr14105628578105628618-intron-Distal4.381305.40707K562CSTF2T
chr14105625380105625459-intron-Distal5.509269.01779K562EWSR1
chr14105630965105631022-intron-Distal3.653728.07651K562EWSR1
chr14105624961105625028-intron-Distal4.324248.59510K562EWSR1
chr14105632469105632519-intron-Distal6.7200012.66369K562AATF
chr14105625611105625722-intron-Distal5.8477526.96853K562RBFOX2
chr14105625620105625676-intron-Distal3.764926.51841K562AATF
chr14105629226105629243-intron-Distal5.5257220.15337K562AATF
chr14105626831105626892-intron-Distal4.066506.64618K562EWSR1
chr14105629126105629181-intron-Distal6.9724819.37968K562DROSHA
chr14105625172105625219-intron-Distal4.729726.12846K562EWSR1
chr14105625949105626079-intron-Distal6.3284630.13457K562RBFOX2
chr14105630371105630432-intron-Distal5.342976.70265K562EWSR1
chr14105633188105633236-intron-Distal5.350648.72707K562EWSR1
chr14105625625105625708-intron-Distal5.115489.54146K562CSTF2T
chr14105628866105628940-intron-Distal4.406228.89959K562NONO
chr14105633283105633337-intron-Distal5.388769.01779K562EWSR1
chr14105632483105632540-intron-Distal4.682226.92157K562CSTF2T
chr14105633260105633320-intron-Distal3.070383.21880K562RBFOX2
chr14105632734105632783-intron-Distal3.551186.41599K562EWSR1
chr14105630386105630426-intron-Distal6.572279.67573K562AATF
chr14105630861105630886-intron-Distal4.900298.86913K562AATF
chr14105626586105626642-intron-Distal7.7054632.12437K562DROSHA
chr14105625245105625292-intron-Distal3.450183.30889K562GTF2F1
chr14105624640105624671-intron-Distal3.898083.17740K562CSTF2T
chr14105625260105625305-intron-Distal5.162597.70517K562RBFOX2
chr14105631472105631549-intron-Distal6.4649212.65300K562DROSHA
chr14105626303105626356-intron-Distal5.196216.84138K562EIF4G2
chr14105633405105633433-intron-Distal6.324298.20425K562AATF
chr14105628535105628630-intron-Distal5.9932127.64808K562DROSHA
chr14105626105105626165-intron-Distal4.689149.05886K562RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-44N21.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-44N21.4 is not available on ENCORE database.

  • 22 RBPs can affect the levels of RP11-44N21.4.  








The Knockdown/knockout RNA-Seq assay for RP11-44N21.4 is not available on ENCORE database.





22 RBPs can affect the gene expression of RP11-44N21.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-44N21.4ENSG00000257622.140.823007.294802.484305.196502.84500K562ADAR
RP11-44N21.4ENSG00000257622.159.9128032.930100.863402.133001.33820K562ATP5C1
RP11-44N21.4ENSG00000257622.154.435207.637502.833304.520502.08910K562CPSF7
RP11-44N21.4ENSG00000257622.137.292400.0000099999.999906.898805.37990K562CELF1
RP11-44N21.4ENSG00000257622.133.493407.550302.149203.459801.30860K562DDX1
RP11-44N21.4ENSG00000257622.146.204808.011002.527904.548802.77200K562DHX30
RP11-44N21.4ENSG00000257622.131.559307.684602.037903.108101.68100K562DNAJC21
RP11-44N21.4ENSG00000257622.126.971000.0000099999.999908.571306.94610K562EIF4G2
RP11-44N21.4ENSG00000257622.13.2288023.11050-2.839503.317802.38380K562FIP1L1
RP11-44N21.4ENSG00000257622.115.4369042.39380-1.457502.833601.67910K562GLRX3
RP11-44N21.4ENSG00000257622.141.5510011.853001.809502.716201.51280K562HNRNPA2B1
RP11-44N21.4ENSG00000257622.136.877208.032202.198803.945401.71950K562IGF2BP1
RP11-44N21.4ENSG00000257622.163.153200.0000099999.999906.144003.37880K562CCAR2
RP11-44N21.4ENSG00000257622.130.339200.0000099999.999908.908106.94710K562MSI2
RP11-44N21.4ENSG00000257622.135.8918010.357101.792902.318901.42820K562PABPN1
RP11-44N21.4ENSG00000257622.140.979400.0000099999.999904.693502.88430K562PNPT1
RP11-44N21.4ENSG00000257622.124.145900.0000099999.999905.667104.50260K562PUF60
RP11-44N21.4ENSG00000257622.130.587300.0000099999.999908.271806.34550K562PUM1
RP11-44N21.4ENSG00000257622.172.125800.0000099999.999904.949603.65370K562PUM2
RP11-44N21.4ENSG00000257622.135.209307.165602.296704.333102.85020K562SRSF7
RP11-44N21.4ENSG00000257622.115.537900.0000099999.999904.975701.65070K562SUB1
RP11-44N21.4ENSG00000257622.147.328100.0000099999.9999010.176607.28560K562TUFM
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-44N21.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-44N21.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-44N21.4 is not avaliable on ENCORE database.