SMARCA2

General Information

Gene Name       : SMARCA2
Gene ID             : ENSG00000080503.23
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMARCA2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMARCA2ENSG00000080503.23208.73172.78190.75ENCSR000AEF
HepG2SMARCA2ENSG00000080503.2320.8020.0420.42ENCSR985KAT
K562SMARCA2ENSG00000080503.2320.0817.1718.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMARCA2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMARCA2 RNA is bound by 20 proteins.  







eCLIP assay for SMARCA2 is not avaliable on ENCORE database.





20 proteins are bound to SMARCA2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr921932412193294+3'-UTR3.800107.04643K562PUM2
chr921934832193519+3'-UTR4.901275.76540K562PUM2
chr920174102017466+5'-UTR,intron-Distal4.170445.80675K562EIF4G2
chr920732102073257+CDS,intron-Proximal4.152886.81811K562UCHL5
chr920474652047526+CDS,intron-Proximal4.926426.35567HepG2PRPF8
chr920396692039728+CDS4.504595.14756K562RBM15
chr920762292076313+CDS5.042297.84234K562ZNF622
chr921041512104169+CDS4.190923.53690K562ZNF622
chr921237292123770+CDS3.170813.17151K562UCHL5
chr920732102073250+CDS,intron-Proximal3.491343.68471HepG2BCLAF1
chr921102532110290+CDS,intron-Proximal4.144954.23295HepG2GRWD1
chr921617692161845+CDS3.050404.74199K562PUM1
chr920736022073621+CDS4.059623.71613K562UCHL5
chr920472092047262+CDS,intron-Proximal3.780035.05356HepG2PRPF8
chr920584152058503+CDS,intron-Proximal4.747765.01842HepG2PRPF8
chr920704172070470+CDS,intron-Proximal4.819615.10960K562ZNF622
chr921238632123883+CDS4.040583.36385K562UCHL5
chr921617582161838+CDS4.113886.81811K562UCHL5
chr920545682054649+CDS,intron-Proximal5.6515711.71894HepG2U2AF2
chr920704172070472+CDS,intron-Proximal4.471839.77102K562UCHL5
chr921041442104171+CDS,intron-Proximal3.867413.34184HepG2GRWD1
chr921617642161812+CDS4.442174.77252K562ZNF622
chr921861192186193+CDS4.755786.15968K562UCHL5
chr920394692039539+CDS3.166843.06971K562YBX3
chr920471982047251+CDS,intron-Proximal5.342337.28294K562AQR
chr920704212070472+CDS,intron-Proximal3.107303.69997K562GRWD1
chr920397282039789+CDS4.023583.73926K562RBM15
chr920765322076626+intron-Distal5.5726310.24238HepG2PCBP2
chr920164532016548+intron-Distal3.051103.89082K562TIA1
chr920458402045878+intron-Distal3.000123.44026K562AGGF1
chr921709582171039+intron-Distal3.265933.42785HepG2HNRNPM
chr920154362015512+intron-Distal,intron-Proximal3.332823.31456K562TIA1
chr920458862045946+intron-Distal5.1423414.13591K562AGGF1
chr920175152017591+intron-Distal,intron-Proximal4.268406.02361K562EIF4G2
chr920175372017612+intron-Distal,intron-Proximal3.316533.73797K562CSTF2T
chr920175282017588+intron-Distal,intron-Proximal4.839516.87697K562NONO
chr920470802047197+intron-Distal,intron-Proximal4.752883.77802HepG2U2AF2
chr920458742045962+intron-Distal3.364148.17198K562HNRNPL
chr920431232043188+intron-Distal4.782344.85237K562UPF1
chr920166812016732+intron-Distal3.932093.59342K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMARCA2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMARCA2 is not available on ENCORE database.

  • 75 RBPs can affect the levels of SMARCA2.  








The Knockdown/knockout RNA-Seq assay for SMARCA2 is not available on ENCORE database.





75 RBPs can affect the gene expression of SMARCA2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMARCA2ENSG00000080503.151406.638001136.624300.307402.147201.31470HepG2ABCF1
SMARCA2ENSG00000080503.15766.44270907.36900-0.243502.103801.55930HepG2ACO1
SMARCA2ENSG00000080503.15539.69980773.62390-0.519503.307402.28370HepG2BCCIP
SMARCA2ENSG00000080503.15584.048901073.47720-0.8781012.1428011.00900HepG2BOP1
SMARCA2ENSG00000080503.15773.16860907.25880-0.230702.027101.44540HepG2CKAP4
SMARCA2ENSG00000080503.151161.82020839.226300.469207.797206.51680HepG2DDX19B
SMARCA2ENSG00000080503.151029.36100837.924100.296801.918801.34170HepG2DDX21
SMARCA2ENSG00000080503.15413.99930576.18530-0.476902.770701.37830HepG2DDX28
SMARCA2ENSG00000080503.15424.622501119.10300-1.3981012.8630010.85370HepG2DDX59
SMARCA2ENSG00000080503.15585.78500727.81330-0.313202.399401.73910HepG2DNAJC21
SMARCA2ENSG00000080503.15530.37950721.42060-0.443805.252104.39860HepG2DNAJC2
SMARCA2ENSG00000080503.151007.70320757.855500.411002.799901.87380HepG2EEF2
SMARCA2ENSG00000080503.151308.37750943.283600.471902.738102.05200HepG2EIF4B
SMARCA2ENSG00000080503.152053.514801464.442300.487608.964707.98690HepG2ETF1
SMARCA2ENSG00000080503.151549.631001147.789100.433003.198602.37710HepG2FIP1L1
SMARCA2ENSG00000080503.15802.60180521.364700.622306.052404.91040HepG2FUBP3
SMARCA2ENSG00000080503.15796.233501009.29400-0.342104.028803.22770HepG2HNRNPL
SMARCA2ENSG00000080503.15622.92420792.12290-0.346702.187601.34190HepG2HNRNPM
SMARCA2ENSG00000080503.15995.04870811.920700.293302.891302.27240HepG2HNRNPU
SMARCA2ENSG00000080503.151460.20040989.543700.561204.249102.71880HepG2HSPD1
SMARCA2ENSG00000080503.15671.65480829.50310-0.304503.035901.97120HepG2KIF1C
SMARCA2ENSG00000080503.151254.87430983.355900.351702.043901.49650HepG2MATR3
SMARCA2ENSG00000080503.15707.60400929.25950-0.393102.731701.92770HepG2MSI2
SMARCA2ENSG00000080503.151170.49830945.296900.308201.968701.33280HepG2NSUN2
SMARCA2ENSG00000080503.15404.33490862.98510-1.0938023.8140021.95580HepG2PRPF4
SMARCA2ENSG00000080503.15710.537701039.66820-0.549103.132401.84520HepG2PRPF6
SMARCA2ENSG00000080503.151268.948201048.785400.274801.955901.44260HepG2PUF60
SMARCA2ENSG00000080503.15867.473101112.51860-0.358903.221402.49730HepG2PUM2
SMARCA2ENSG00000080503.15993.268601192.17410-0.263302.275201.48860HepG2RBM15
SMARCA2ENSG00000080503.151082.72160861.853200.329002.686502.02020HepG2RBM25
SMARCA2ENSG00000080503.15642.21560953.98810-0.570904.876703.54050HepG2RBM27
SMARCA2ENSG00000080503.15739.054801023.31670-0.469504.243103.42570HepG2RPLP0
SMARCA2ENSG00000080503.15496.717101055.14450-1.0869016.7346015.15780HepG2SF3B1
SMARCA2ENSG00000080503.15658.51100843.18100-0.356603.958703.21160HepG2SMN1
SMARCA2ENSG00000080503.15751.863801382.45790-0.8787022.9792021.90160HepG2SRFBP1
SMARCA2ENSG00000080503.151457.80150952.874000.6133012.1643011.32290HepG2SRSF1
SMARCA2ENSG00000080503.15731.836201135.43220-0.633604.881703.52070HepG2SRSF3
SMARCA2ENSG00000080503.151597.009701200.292100.411906.567905.84110HepG2SSB
SMARCA2ENSG00000080503.15808.190401177.67450-0.543209.536308.50000HepG2SUCLG1
SMARCA2ENSG00000080503.151366.02860998.134800.452602.810901.47120HepG2SUGP2
SMARCA2ENSG00000080503.151062.11060856.600000.310102.921602.34710HepG2TAF15
SMARCA2ENSG00000080503.151478.26600982.037800.590006.631805.67290HepG2U2AF1
SMARCA2ENSG00000080503.15335.76520447.28590-0.413702.192101.51540HepG2UCHL5
SMARCA2ENSG00000080503.15368.47270693.31380-0.912006.718105.10850HepG2UPF2
SMARCA2ENSG00000080503.15560.611601038.09420-0.8889018.7819017.43420HepG2UTP3
SMARCA2ENSG00000080503.15579.00460745.37370-0.364402.078901.44220HepG2XRN2
SMARCA2ENSG00000080503.151476.227001182.548900.319904.806604.13600HepG2ZNF622
SMARCA2ENSG00000080503.15865.754401314.89200-0.6029010.804609.77670K562AGGF1
SMARCA2ENSG00000080503.15838.825601368.18220-0.705809.608908.30150K562AKAP8L
SMARCA2ENSG00000080503.15562.914501043.00920-0.8898011.7028010.61830K562AQR
SMARCA2ENSG00000080503.15541.63980767.60350-0.503005.085903.20760K562BCCIP
SMARCA2ENSG00000080503.15602.66950741.70270-0.299502.298301.42550K562BCLAF1
SMARCA2ENSG00000080503.15958.548501462.66080-0.609703.461602.24950K562CNOT7
SMARCA2ENSG00000080503.15563.36720740.28100-0.394003.544101.48270K562DDX24
SMARCA2ENSG00000080503.15427.70740650.46500-0.604807.032204.92960K562DDX27
SMARCA2ENSG00000080503.15386.91270642.47310-0.731606.309504.88410K562EFTUD2
SMARCA2ENSG00000080503.151249.62580897.033000.478206.442705.41290K562EIF2S2
SMARCA2ENSG00000080503.15470.57310694.98000-0.562604.789103.75680K562EIF3G
SMARCA2ENSG00000080503.15514.30680729.90790-0.505104.094803.09890K562EIF4A3
SMARCA2ENSG00000080503.15650.95420838.89300-0.365902.544501.73310K562FIP1L1
SMARCA2ENSG00000080503.15573.804301195.33580-1.0588019.0716017.00630K562GRSF1
SMARCA2ENSG00000080503.15421.08130689.96530-0.712405.778004.36760K562HNRNPM
SMARCA2ENSG00000080503.151166.945701452.06220-0.315402.493301.71440K562KIF1C
SMARCA2ENSG00000080503.15534.37910741.88200-0.473303.258901.64150K562LIN28B
SMARCA2ENSG00000080503.15679.38230980.40960-0.529205.506504.30690K562MAGOH
SMARCA2ENSG00000080503.15766.96910978.40210-0.351302.882301.93920K562MATR3
SMARCA2ENSG00000080503.151266.066201626.66540-0.361603.799702.70490K562MBNL1
SMARCA2ENSG00000080503.15633.66660946.60500-0.579008.454507.11430K562MTPAP
SMARCA2ENSG00000080503.15701.05960952.25730-0.441803.546102.59840K562PPIG
SMARCA2ENSG00000080503.15356.98950625.19830-0.808407.152505.94890K562PRPF8
SMARCA2ENSG00000080503.15621.45500952.53850-0.616107.536506.47790K562PTBP1
SMARCA2ENSG00000080503.15883.993501357.02260-0.618306.397905.61110K562PUS1
SMARCA2ENSG00000080503.15816.072501322.08040-0.6960011.8352010.61460K562RBM15
SMARCA2ENSG00000080503.15426.03130636.89270-0.580103.756102.80170K562RPS19
SMARCA2ENSG00000080503.15869.202101332.23850-0.616103.575901.79440K562SBDS
SMARCA2ENSG00000080503.15467.41520647.37370-0.469902.753001.78120K562SF3B1
SMARCA2ENSG00000080503.15439.38310660.68850-0.588506.010604.71600K562SF3B4
SMARCA2ENSG00000080503.15622.367001063.29840-0.7727015.9761013.98780K562SRPK2
SMARCA2ENSG00000080503.151144.24350933.819000.293102.248301.60290K562SRSF1
SMARCA2ENSG00000080503.15521.34970716.88590-0.459504.213502.58690K562SSB
SMARCA2ENSG00000080503.151036.466801484.33750-0.518106.630804.44990K562SUCLG1
SMARCA2ENSG00000080503.15412.25590605.43050-0.554403.467402.31640K562SUPV3L1
SMARCA2ENSG00000080503.15553.08620945.05620-0.772908.879007.51700K562TARDBP
SMARCA2ENSG00000080503.15455.09780615.87880-0.436502.472201.44790K562U2AF1
SMARCA2ENSG00000080503.15493.43220636.09870-0.366402.640901.85510K562U2AF2
SMARCA2ENSG00000080503.15739.44900992.30140-0.424305.571604.41450K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMARCA2 is not available on ENCORE database.





3 RBPs can affect the splicing of SMARCA2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMARCA2ENSG00000080503.15chr9+217041821704722161685216190321815702181676-0.124000.000530.06052excludedHepG2SSB
SESMARCA2ENSG00000080503.15chr9+217041821704722161685216190321815702181676-0.260000.003130.04996excludedK562U2AF2
SESMARCA2ENSG00000080503.15chr9+2170418217047221616852161903218157021816760.181000.000030.05686includedHepG2GTF2F1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMARCA2 is not avaliable on ENCORE database.