CLEC16A

General Information

Gene Name       : CLEC16A
Gene ID             : ENSG00000038532.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLEC16A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLEC16AENSG00000038532.1512.1813.9413.06ENCSR000AEF
HepG2CLEC16AENSG00000038532.1515.2714.7515.01ENCSR985KAT
K562CLEC16AENSG00000038532.1511.6110.4911.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLEC16A is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLEC16A RNA is bound by 23 proteins.  







eCLIP assay for CLEC16A is not avaliable on ENCORE database.





23 proteins are bound to CLEC16A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161127582511275913+3'-UTR6.617757.94582K562PUM2
chr161103842811038462+5'-UTR5.482713.85934HepG2DDX3X
chr161103848111038553+5'-UTR3.156643.03570HepG2NCBP2
chr161121460911214667+CDS,intron-Proximal4.780034.68690HepG2PRPF8
chr161114114811141216+CDS,intron-Proximal3.292204.24993HepG2PPIG
chr161107114811071270+CDS,intron-Proximal3.991313.14999HepG2GRWD1
chr161111399611114141+CDS,intron-Proximal4.320457.08280K562SF3B4
chr161121448511214556+CDS4.439934.67689HepG2PPIG
chr161105638911056445+CDS3.422593.57857HepG2BCLAF1
chr161114114811141214+CDS,intron-Proximal4.315257.40437K562DDX24
chr161106506911065195+CDS,intron-Distal,intron-Proximal4.542984.22101K562PRPF8
chr161106683511066921+CDS,intron-Proximal3.492517.09278HepG2PPIG
chr161114112211141183+CDS,intron-Proximal4.174113.77802HepG2U2AF2
chr161109704411097146+CDS,intron-Proximal4.652884.72838K562UCHL5
chr161115479011154881+CDS,intron-Proximal4.969376.76175HepG2PPIG
chr161113365211133736+CDS,intron-Proximal3.186454.42661HepG2PPIG
chr161114541911145503+CDS,intron-Proximal3.374736.54857HepG2PPIG
chr161109692911097025+CDS,intron-Proximal3.810054.93978HepG2BCLAF1
chr161106683711066921+CDS,intron-Proximal3.619346.39464HepG2BCLAF1
chr161113612811136221+CDS,intron-Proximal3.808416.00907HepG2PPIG
chr161109713211097204+CDS,intron-Proximal3.309848.54207HepG2PRPF8
chr161126614311266238+intron-Distal4.3794612.12949HepG2GTF2F1
chr161126570711265733+intron-Distal5.1168623.84940HepG2HNRNPL
chr161126594311265954+intron-Distal3.742325.98214HepG2HNRNPL
chr161126612011266247+intron-Distal4.5004535.45211HepG2AGGF1
chr161126613211266226+intron-Distal3.7018015.59344HepG2XPO5
chr161126588111265933+intron-Distal5.7068632.16621K562AGGF1
chr161126603011266126+intron-Distal6.7142065.51017K562AGGF1
chr161126596911265984+intron-Distal3.374436.94218HepG2HNRNPL
chr161126574411265809+intron-Distal4.6069331.08126HepG2HNRNPL
chr161126558511265668+intron-Distal5.4325635.12202K562AGGF1
chr161126603011266120+intron-Distal4.0653816.69888HepG2AGGF1
chr161126615311266214+intron-Distal3.764044.32606HepG2CDC40
chr161126574111265806+intron-Distal5.5377410.70386K562HNRNPL
chr161126574311265804+intron-Distal6.7272144.58198K562AGGF1
chr161126604711266122+intron-Distal5.181634.97583HepG2GTF2F1
chr161126569511265782+intron-Distal3.826804.80250HepG2CDC40
chr161126596611266029+intron-Distal4.914487.01052K562HNRNPL
chr161126575411265804+intron-Distal4.498123.29554HepG2GTF2F1
chr161126587511265939+intron-Distal3.041819.18340HepG2AGGF1
chr161126604211266113+intron-Distal4.5608111.62731K562HNRNPL
chr161126626411266302+intron-Distal4.450315.63065K562HNRNPL
chr161126595811266022+intron-Distal4.9105710.82244HepG2XPO5
chr161126608511266094+intron-Distal4.3051616.60336HepG2HNRNPL
chr161126574311265798+intron-Distal5.1931224.93360HepG2AGGF1
chr161126612611266247+intron-Distal6.2348677.96981K562AGGF1
chr161126560911265657+intron-Distal4.2582118.21108HepG2AGGF1
chr161126613111266228+intron-Distal5.0373826.49886K562HNRNPL
chr161110167311101741+intron-Distal5.072255.14653K562EIF4G2
chr161126619111266202+intron-Distal3.7019618.11818HepG2HNRNPL
chr161126573311265743+intron-Distal4.3250014.45608HepG2HNRNPL
chr161126607811266085+intron-Distal4.6827118.51791HepG2HNRNPL
chr161126565011265689+intron-Distal5.6122224.01570HepG2HNRNPL
chr161126567311265754+intron-Distal3.470903.81808HepG2GTF2F1
chr161126598411266026+intron-Distal3.8310115.82310HepG2HNRNPL
chr161116726211167347+intron-Distal3.259093.47356HepG2HNRNPK
chr161126568911265707+intron-Distal5.2886521.06820HepG2HNRNPL
chr161126595411265969+intron-Distal3.814097.79751HepG2HNRNPL
chr161126609411266105+intron-Distal4.1765512.84108HepG2HNRNPL
chr161126554211265585+intron-Distal5.5231916.85407K562AGGF1
chr161126602911266101+intron-Distal3.8380512.87066HepG2XPO5
chr161123536711235458+intron-Distal4.075234.10339HepG2CSTF2T
chr161126567111265741+intron-Distal5.8861116.30531K562HNRNPL
chr161111376711113885+intron-Distal4.284944.10688K562KHSRP
chr161126611611266177+intron-Distal4.2100937.30595HepG2HNRNPL
chr161124466211244705+intron-Distal3.228933.18845HepG2HNRNPM
chr161126579911265875+intron-Distal5.0922321.67990HepG2AGGF1
chr161126592011265943+intron-Distal4.403956.14017HepG2HNRNPL
chr161126620211266213+intron-Distal3.751299.21771HepG2HNRNPL
chr161126618511266191+intron-Distal3.3440916.69594HepG2HNRNPL
chr161111285311112939+intron-Distal3.387163.17659HepG2RBFOX2
chr161110162211101724+intron-Distal3.316464.17049K562TARDBP
chr161126617711266185+intron-Distal3.6786520.86774HepG2HNRNPL
chr161126593311266030+intron-Distal6.1136161.32461K562AGGF1
chr161126602611266068+intron-Distal4.8412728.38777HepG2HNRNPL
chr161126606811266078+intron-Distal5.0526023.03670HepG2HNRNPL
chr161126566811265743+intron-Distal6.7608648.78222K562AGGF1
chr161126580411265881+intron-Distal6.8330646.44800K562AGGF1
chr161126587111265920+intron-Distal5.1931722.96832HepG2HNRNPL
chr161126580911265866+intron-Distal4.6619218.99935HepG2HNRNPL
chr161126614511266221+intron-Distal4.721134.07596K562GTF2F1
chr161114527011145348+intron-Proximal3.989503.50006HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLEC16A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLEC16A is not available on ENCORE database.

  • 71 RBPs can affect the levels of CLEC16A.  








The Knockdown/knockout RNA-Seq assay for CLEC16A is not available on ENCORE database.





71 RBPs can affect the gene expression of CLEC16A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLEC16AENSG00000038532.101435.37940826.098000.796907.997607.14500HepG2AKAP1
CLEC16AENSG00000038532.101533.527201154.743800.409206.171605.21030HepG2AUH
CLEC16AENSG00000038532.101904.488701105.459600.7847012.4536011.30600HepG2BOP1
CLEC16AENSG00000038532.101136.85520903.974300.330604.153103.37000HepG2CKAP4
CLEC16AENSG00000038532.101094.87980608.882100.846406.121904.98390HepG2CNOT7
CLEC16AENSG00000038532.10984.10880817.403300.267702.562301.93910HepG2CELF1
CLEC16AENSG00000038532.101038.13550878.694900.240502.514001.80180HepG2DAZAP1
CLEC16AENSG00000038532.10844.24520624.049900.435903.449902.69970HepG2DDX21
CLEC16AENSG00000038532.101118.10630791.272400.498703.800003.07860HepG2DDX3X
CLEC16AENSG00000038532.101071.78210679.877200.656604.534103.75960HepG2DDX6
CLEC16AENSG00000038532.10973.50280592.265400.716806.885305.49990HepG2EEF2
CLEC16AENSG00000038532.10909.87230653.425800.477503.332102.68570HepG2EIF2S1
CLEC16AENSG00000038532.101257.69550722.036500.800508.186307.08990HepG2EIF4A3
CLEC16AENSG00000038532.101587.460801153.146300.461003.266802.43670HepG2FIP1L1
CLEC16AENSG00000038532.10994.92730728.733900.449103.223502.47800HepG2FXR1
CLEC16AENSG00000038532.10659.07770428.033700.622604.979603.77680HepG2GEMIN5
CLEC16AENSG00000038532.10800.98030569.878800.491003.188102.09300HepG2GNB2L1
CLEC16AENSG00000038532.10820.90030623.538500.396602.777202.08250HepG2HNRNPC
CLEC16AENSG00000038532.10866.19560619.414600.483706.167105.29300HepG2HNRNPU
CLEC16AENSG00000038532.101308.58210686.981300.9296012.4839011.16770HepG2IGF2BP2
CLEC16AENSG00000038532.10995.02150644.875200.625602.259401.37810HepG2IGF2BP3
CLEC16AENSG00000038532.10795.52930632.708100.330303.648502.81630HepG2ILF2
CLEC16AENSG00000038532.101916.000401246.581000.620005.142203.99650HepG2LARP4
CLEC16AENSG00000038532.101126.98300728.989400.628405.751904.81720HepG2MAGOH
CLEC16AENSG00000038532.101459.41820733.032100.9933012.4527011.18260HepG2MATR3
CLEC16AENSG00000038532.10891.63420668.023900.416502.670701.96080HepG2PABPC4
CLEC16AENSG00000038532.10929.94490709.520100.390204.285703.55940HepG2PCBP1
CLEC16AENSG00000038532.10646.66780840.95750-0.379003.843802.94520HepG2PRPF4
CLEC16AENSG00000038532.101088.00850721.978800.591609.188108.30750HepG2PTBP1
CLEC16AENSG00000038532.101063.72870831.814000.354703.134902.50680HepG2PUF60
CLEC16AENSG00000038532.101253.89310883.076900.505707.960507.06200HepG2PUM1
CLEC16AENSG00000038532.101074.96690882.388600.284702.118201.52750HepG2PUM2
CLEC16AENSG00000038532.101290.33050921.031400.486308.166907.20410HepG2PUS1
CLEC16AENSG00000038532.101131.93420781.887600.533705.652304.80590HepG2QKI
CLEC16AENSG00000038532.101047.251401350.02980-0.366403.488202.53480HepG2RBM15
CLEC16AENSG00000038532.101534.061801108.135500.469106.622205.90360HepG2RBM22
CLEC16AENSG00000038532.101177.45570803.480100.551208.074607.23730HepG2NELFE
CLEC16AENSG00000038532.101437.863801135.009500.341102.617601.95060HepG2RPLP0
CLEC16AENSG00000038532.10966.33040467.829401.0464017.0417015.70540HepG2RPS19
CLEC16AENSG00000038532.101146.92730751.645200.609609.791408.77970HepG2SF3B4
CLEC16AENSG00000038532.10832.79250643.244800.372504.303503.53260HepG2SMN1
CLEC16AENSG00000038532.10965.41690656.033000.557303.616302.50800HepG2SMNDC1
CLEC16AENSG00000038532.102127.351601251.591400.7652023.8454022.75150HepG2SRFBP1
CLEC16AENSG00000038532.101227.73630784.566200.6459011.6985010.86990HepG2SRSF1
CLEC16AENSG00000038532.101164.66770821.378500.503708.234207.22890HepG2SRSF5
CLEC16AENSG00000038532.101248.97210934.062300.419104.587403.82270HepG2SUCLG1
CLEC16AENSG00000038532.10793.19210601.804000.398303.410202.86630HepG2TIAL1
CLEC16AENSG00000038532.10764.15800607.262100.331503.065002.47850HepG2TRIM56
CLEC16AENSG00000038532.101264.09670986.363500.357802.318901.73870HepG2U2AF1
CLEC16AENSG00000038532.101257.46900860.369100.547404.710903.60080HepG2UBE2L3
CLEC16AENSG00000038532.101437.241901204.684600.254502.824902.11940HepG2UPF1
CLEC16AENSG00000038532.10988.36310829.906300.252002.419101.78520HepG2ZC3H8
CLEC16AENSG00000038532.101527.743901324.923800.205402.345901.83020HepG2ZNF622
CLEC16AENSG00000038532.10628.12740957.99830-0.609008.333707.42130K562AGGF1
CLEC16AENSG00000038532.10768.61590996.81380-0.375103.055602.36800K562AKAP8L
CLEC16AENSG00000038532.10783.251201072.16120-0.453003.961603.28390K562AQR
CLEC16AENSG00000038532.10856.841601045.84700-0.287602.650501.75700K562ATP5C1
CLEC16AENSG00000038532.10903.339201072.81140-0.248102.087501.33790K562DKC1
CLEC16AENSG00000038532.10770.12730492.309900.645403.402702.27800K562EIF3A
CLEC16AENSG00000038532.10883.56110635.012500.476402.369801.42050K562EIF3D
CLEC16AENSG00000038532.10523.28380366.340100.514303.923802.98490K562EIF3G
CLEC16AENSG00000038532.101743.601701376.573400.340904.288703.12700K562EIF4G2
CLEC16AENSG00000038532.10758.75570546.414600.473504.928504.15370K562FXR1
CLEC16AENSG00000038532.10235.17620329.88940-0.488202.071201.47160K562G3BP2
CLEC16AENSG00000038532.10867.666201251.51570-0.528505.683404.59610K562GRSF1
CLEC16AENSG00000038532.10876.32430606.238000.531505.056604.27240K562HNRNPC
CLEC16AENSG00000038532.10467.99630725.46990-0.632404.764603.51100K562HNRNPM
CLEC16AENSG00000038532.10817.519001195.73260-0.548605.302904.21970K562HSPD1
CLEC16AENSG00000038532.10821.483701057.96270-0.365003.009802.14760K562KIF1C
CLEC16AENSG00000038532.10643.65460511.889400.330402.176101.42600K562MAGOH
CLEC16AENSG00000038532.10724.941301001.26330-0.465903.893002.89560K562PPIG
CLEC16AENSG00000038532.10677.29160497.343100.445403.698502.94240K562PTBP1
CLEC16AENSG00000038532.10806.14720963.23640-0.256802.046501.52230K562RBM15
CLEC16AENSG00000038532.10595.56290402.821100.564003.560102.41020K562RPS3
CLEC16AENSG00000038532.10694.01030487.577900.509204.271003.39870K562SRSF1
CLEC16AENSG00000038532.10638.96860493.426600.372802.223601.58520K562TARDBP
CLEC16AENSG00000038532.10246.03430330.10520-0.424102.335701.59910K562U2AF2
CLEC16AENSG00000038532.10990.826701207.85920-0.285702.038001.31040K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLEC16A is not available on ENCORE database.





4 RBPs can affect the splicing of CLEC16A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLEC16AENSG00000038532.10chr16+112680101126813411260244112604091127219111276038-0.368000.001840.08820excludedHepG2NCBP2
SECLEC16AENSG00000038532.10chr16+1106641011066416110649811106508711066794110669180.196000.001080.02408includedK562U2AF1
SECLEC16AENSG00000038532.10chr16+112680101126813411260244112604091127219111276038-0.341000.000760.03851excludedHepG2PCBP1
MXECLEC16AENSG00000038532.10chr16+11056311110564451106301711063166110516381105176711064981110650870.138000.004210.097211includedHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLEC16A is not avaliable on ENCORE database.