UPK3B

General Information

Gene Name       : UPK3B
Gene ID             : ENSG00000243566.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UPK3B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UPK3BENSG00000243566.60.000.030.01ENCSR000AEF
HepG2UPK3BENSG00000243566.60.020.000.01ENCSR985KAT
K562UPK3BENSG00000243566.60.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UPK3B is not avaliable on ENCORE database.



Proteins bound to RNA
  • UPK3B RNA is bound by 45 proteins.  







eCLIP assay for UPK3B is not avaliable on ENCORE database.





45 proteins are bound to UPK3B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr77662672276626899+intron-Distal7.3749927.43779K562EIF4G2
chr77662674576626925+intron-Distal5.656875.54520K562GTF2F1
chr77622112176221196+intron-Distal3.054083.41665HepG2GRWD1
chr77625609376256160+intron-Distal4.950875.43245K562SLTM
chr77662689676626943+intron-Distal4.635384.92128HepG2CSTF2T
chr77622131476221419+intron-Distal3.766644.22172HepG2SRSF9
chr77662681976626896+intron-Distal5.477549.23970HepG2CSTF2T
chr77617888276179030+intron-Distal,intron-Proximal4.390603.34538K562DGCR8
chr77622473076224794+intron-Distal4.6930812.61905K562SAFB2
chr77618866276188726+intron-Distal3.123208.52609K562HNRNPL
chr77619501676195077+intron-Distal4.577196.05753HepG2SUGP2
chr77618999676190020+intron-Distal3.9442214.89055K562HNRNPL
chr77622414976224183+intron-Distal3.617794.16915HepG2HLTF
chr77618836876188408+intron-Distal3.153089.02115HepG2HNRNPL
chr77621722576217258+intron-Distal3.315154.03313K562HNRNPL
chr77662675176626898+intron-Distal6.7861025.89585HepG2FAM120A
chr77622670876226779+intron-Distal3.089063.10112K562UCHL5
chr77619008476190115+intron-Distal4.0537515.37843HepG2HNRNPL
chr77618912276189163+intron-Distal4.773268.12733K562HNRNPL
chr77619575876195823+intron-Distal4.251737.51194HepG2MATR3
chr77662711976627246+intron-Distal6.6682512.95876K562EIF4G2
chr77662682076626897+intron-Distal5.086355.48218K562FAM120A
chr77617898376179068+intron-Distal,intron-Proximal4.156064.07395K562SRSF1
chr77662822276628283+intron-Distal5.6105610.93035K562CSTF2T
chr77624827976248381+intron-Distal3.587084.59821K562ILF3
chr77619134276191383+intron-Distal4.042923.24322HepG2MATR3
chr77619988576199999+intron-Distal3.436576.27063HepG2HNRNPL
chr77618900076189042+intron-Distal4.2302519.43078HepG2HNRNPL
chr77622150576221553+intron-Distal3.698717.16053HepG2HLTF
chr77619312476193177+intron-Distal4.862447.38107K562HNRNPM
chr77618957376189621+intron-Distal4.1252912.55079K562HNRNPK
chr77618925776189300+intron-Distal3.069906.73580K562PTBP1
chr77619312776193172+intron-Distal3.816003.39857HepG2HNRNPM
chr77619196676192029+intron-Distal6.4567721.90835K562HNRNPM
chr77662852876628572+intron-Distal4.772214.19739K562EIF4G2
chr77618324576183319+intron-Distal3.115554.51517HepG2XRCC6
chr77617905776179166+intron-Distal,intron-Proximal3.015508.14820HepG2SRSF1
chr77621719276217328+intron-Distal5.1192814.73155K562MATR3
chr77662821276628286+intron-Distal6.0223411.47680K562EIF4G2
chr77618993276189975+intron-Distal3.157223.62826K562HNRNPL
chr77618900276189052+intron-Distal4.0311520.03487K562PTBP1
chr77622226676222307+intron-Distal3.299425.60151HepG2HLTF
chr77618898876189056+intron-Distal3.5742216.82716HepG2PTBP1
chr77623698276237022+intron-Distal3.484725.39438HepG2HNRNPC
chr77623315776233165+intron-Distal3.105408.72471HepG2HNRNPC
chr77662820476628280+intron-Distal5.121683.77360K562GTF2F1
chr77662821676628285+intron-Distal5.772869.90383K562AKAP8L
chr77619311076193173+intron-Distal3.714543.43829K562EXOSC5
chr77622365976223731+intron-Distal4.5320913.22362K562SAFB2
chr77619310976193179+intron-Distal3.707254.81844HepG2SUGP2
chr77622192276221972+intron-Distal3.287746.74137K562SAFB2
chr77621531776215405+intron-Distal3.221333.36613K562MATR3
chr77663153176631577+intron-Distal4.849945.86613HepG2PPIG
chr77619197376192018+intron-Distal4.238198.21325K562EXOSC5
chr77619574376195834+intron-Distal4.9371916.54669HepG2SUGP2
chr77619578376195812+intron-Distal5.209397.12711K562HNRNPM
chr77618926076189309+intron-Distal3.6682610.69805HepG2PTBP1
chr77662683176626943+intron-Distal4.537735.09622HepG2IGF2BP1
chr77662672676626911+intron-Distal4.429125.23978HepG2PRPF4
chr77662320376623297+intron-Distal3.244003.67595K562EWSR1
chr77624757576247663+intron-Distal3.820493.56019HepG2GRWD1
chr77621965976219780+intron-Distal3.375223.33755HepG2RBM22
chr77621657276216623+intron-Distal4.286868.58056HepG2MATR3
chr77622102676221083+intron-Distal3.135123.40562HepG2SRSF9
chr77621741076217465+intron-Distal3.8713911.23561K562HNRNPL
chr77622163876221681+intron-Distal3.015275.55322HepG2HLTF
chr77619809676198150+intron-Distal3.289224.69565K562KHDRBS1
chr77617868176178779+intron-Distal4.7611327.87942HepG2NCBP2
chr77621752876217598+intron-Distal3.405714.51915K562MATR3
chr77619001676190036+intron-Distal3.8685211.34708HepG2HNRNPL
chr77624891676248932+intron-Distal3.357027.29123K562ILF3
chr77617902276179041+intron-Distal,intron-Proximal4.434589.72826K562RBM15
chr77622205576222131+intron-Distal4.1646915.88968K562SAFB2
chr77621692576217005+intron-Distal3.6183312.91991HepG2MATR3
chr77622536076225412+intron-Distal4.750147.76000K562SAFB2
chr77618924676189306+intron-Distal3.7079516.55710HepG2HNRNPL
chr77663364376633664+intron-Distal,intron-Proximal3.311955.10493HepG2AQR
chr77622839276228479+intron-Distal4.056103.91527K562PPIL4
chr77618952376189582+intron-Distal3.445835.88643HepG2RBFOX2
chr77621690076216946+intron-Distal3.411567.90347HepG2SUGP2
chr77621563976215720+intron-Distal3.8095414.70450HepG2SUGP2
chr77621724376217320+intron-Distal3.102375.37771HepG2PTBP1
chr77662689876626939+intron-Distal5.034477.81647HepG2FAM120A
chr77617908776179149+intron-Distal4.289333.71613K562UCHL5
chr77662852276628577+intron-Distal5.175049.49287HepG2CSTF2T
chr77621984876219915+intron-Distal3.028923.10112K562UCHL5
chr77662706476627150+intron-Distal5.5308610.61528HepG2FAM120A
chr77622452476224570+intron-Distal5.1786510.73655K562SAFB2
chr77622404076224078+intron-Distal3.986356.78672K562SAFB2
chr77617886976178969+intron-Distal3.011783.12311K562DROSHA
chr77622095976220986+intron-Distal3.736875.55255HepG2HLTF
chr77622407876224144+intron-Distal3.518369.27930K562SAFB2
chr77662681676626934+intron-Distal5.7865615.82330K562CSTF2T
chr77619521676195295+intron-Distal4.689235.04209K562MATR3
chr77619002076190040+intron-Distal3.6631911.10151K562HNRNPL
chr77617904176179070+intron-Distal,intron-Proximal4.378479.04978K562RBM15
chr77622060576220665+intron-Distal4.251965.07394K562PPIL4
chr77622582676225887+intron-Distal3.030056.29653HepG2HLTF
chr77622518676225269+intron-Distal5.5525011.26617HepG2HLTF
chr77619815276198267+intron-Distal3.190757.28281HepG2HNRNPL
chr77662705276627119+intron-Distal5.864737.07160K562EIF4G2
chr77621694676217017+intron-Distal4.0653420.94332HepG2SUGP2
chr77624600176246090+intron-Distal3.461643.84723K562ILF3
chr77619503076195067+intron-Distal3.659985.28137HepG2MATR3
chr77622828776228392+intron-Distal4.003783.90264K562PPIL4
chr77623696076236982+intron-Distal3.365224.63037HepG2HNRNPC
chr77621947576219535+intron-Distal3.390616.34609K562SAFB2
chr77621953876219590+intron-Distal3.369003.35103HepG2QKI
chr77621595776216011+intron-Distal3.015283.42334K562KHDRBS1
chr77661965476619744+intron-Distal,intron-Proximal4.730269.10443HepG2PRPF8
chr77622473976224792+intron-Distal4.395834.44454K562UCHL5
chr77662125876621316+intron-Distal4.535144.65580K562GTF2F1
chr77622831876228393+intron-Distal3.3784810.23400K562SAFB2
chr77625608776256157+intron-Distal3.133795.82118HepG2HLTF
chr77622243376222463+intron-Distal3.714956.16467K562SAFB2
chr77662817776628289+intron-Distal3.941413.52163HepG2IGF2BP1
chr77662715076627194+intron-Distal5.071477.81647HepG2FAM120A
chr77619575176195839+intron-Distal4.696275.12432K562EXOSC5
chr77621753076217570+intron-Distal3.588028.16357HepG2SUGP2
chr77621760376217648+intron-Distal3.755028.60624HepG2SUGP2
chr77618904276189075+intron-Distal4.0992715.57450HepG2HNRNPL
chr77619524276195293+intron-Distal5.532547.87294HepG2MATR3
chr77662859776628684+intron-Distal4.569915.28165K562CSTF2T
chr77662688676626930+intron-Distal5.225584.88145K562FASTKD2
chr77619164376191712+intron-Distal4.413468.84871HepG2MATR3
chr77621642776216480+intron-Distal3.402137.90347HepG2SUGP2
chr77622496176225022+intron-Distal3.7497210.38836K562SAFB2
chr77618835576188438+intron-Distal3.376485.15675HepG2CSTF2
chr77622114476221188+intron-Distal3.789335.30520K562UCHL5
chr77621720876217327+intron-Distal3.116529.35587HepG2MATR3
chr77621011676210172+intron-Distal3.809203.45317HepG2HNRNPL
chr77618952876189615+intron-Distal3.081225.27911K562RBFOX2
chr77618924476189302+intron-Distal3.8323713.37908K562HNRNPL
chr77624445576244571+intron-Distal4.592385.62822K562HNRNPK
chr77621854076218588+intron-Distal4.747865.72657HepG2MATR3
chr77621739876217471+intron-Distal3.555508.97268HepG2HNRNPL
chr77622053676220584+intron-Distal3.186685.10919K562SLTM
chr77663365276633667+intron-Distal,intron-Proximal5.353348.03507K562AQR
chr77662860076628677+intron-Distal5.152257.71000K562FAM120A
chr77663147676631587+intron-Distal,intron-Proximal3.732865.80880HepG2GRWD1
chr77618389576183929+intron-Distal4.066557.58805HepG2HNRNPC
chr77622711976227161+intron-Distal3.618635.53469K562SAFB2
chr77662716176627278+intron-Distal5.4880012.78265K562CSTF2T
chr77662819076628276+intron-Distal5.354418.46281HepG2CSTF2T
chr77663362376633652+intron-Distal,intron-Proximal4.392347.15298K562AQR
chr77662125476621313+intron-Distal4.750977.00800K562CSTF2T
chr77622473676224786+intron-Distal3.883056.43511HepG2HLTF
chr77622839376228465+intron-Distal3.7713212.61020K562SAFB2
chr77619035476190377+intron-Distal3.539139.66830K562KHSRP
chr77619523376195299+intron-Distal5.6548610.83230K562PTBP1
chr77622722476227281+intron-Distal3.375877.14447K562SAFB2
chr77624893276248963+intron-Distal3.357027.29123K562ILF3
chr77662374376623789+intron-Distal3.869323.14687K562CSTF2T
chr77619961976199732+intron-Distal3.198607.35634HepG2RBFOX2
chr77618952576189616+intron-Distal4.151409.00665HepG2PCBP2
chr77618953876189573+intron-Distal3.276033.62729K562HNRNPK
chr77618887976188901+intron-Distal4.9524315.29041K562HNRNPL
chr77622804076228096+intron-Distal3.555727.91739K562SAFB2
chr77619312276193173+intron-Distal3.901036.45086HepG2MATR3
chr77618891676188964+intron-Distal4.6186521.34040HepG2HNRNPL
chr77618884076188879+intron-Distal3.858459.71603K562HNRNPL
chr77660995176610064+intron-Distal3.970993.14999HepG2GRWD1
chr77622073676220781+intron-Distal3.701925.10467K562SAFB2
chr77619320376193273+intron-Distal4.092697.32721HepG2MATR3
chr77619134576191379+intron-Distal4.214543.89080K562EXOSC5
chr77619554276195592+intron-Distal3.735238.25342HepG2HNRNPM
chr77622137076221437+intron-Distal3.960193.82719HepG2RBM22
chr77662723476627279+intron-Distal4.803446.62861HepG2FAM120A
chr77618934476189410+intron-Distal4.763894.79321K562RBFOX2
chr77663163876631730+intron-Distal,intron-Proximal4.672064.86944K562AQR
chr77618872876188782+intron-Distal3.286306.20894HepG2PTBP1
chr77621514976215215+intron-Distal3.102243.83994HepG2MATR3
chr77662673976626816+intron-Distal5.043299.14519K562CSTF2T
chr77662819776628278+intron-Distal5.227316.70265K562EWSR1
chr77617868176178725+intron-Distal3.928594.51666K562RBM15
chr77622103176221116+intron-Distal3.297029.43215HepG2HLTF
chr77621953576219592+intron-Distal3.5131210.51274K562SAFB2
chr77621984076219917+intron-Distal3.173386.75988K562SAFB2
chr77662681576626880+intron-Distal3.426923.80752K562AKAP8L
chr77662831276628345+intron-Distal5.614395.67376K562FASTKD2
chr77663147876631531+intron-Distal,intron-Proximal3.062485.14343HepG2PPIG
chr77662860276628653+intron-Distal3.103313.23466HepG2CSTF2T
chr77618971176189742+intron-Distal4.220384.24431HepG2RBFOX2
chr77619522276195292+intron-Distal5.266098.14620HepG2PTBP1
chr77662706076627122+intron-Distal4.653724.42197K562EWSR1
chr77662765276627710+intron-Distal5.149218.38279HepG2FAM120A
chr77622213176222159+intron-Distal3.053004.96681K562SAFB2
chr77619322376193271+intron-Distal4.014993.30696K562EXOSC5
chr77622416776224244+intron-Distal3.181696.35053K562SAFB2
chr77620918376209253+intron-Distal3.618635.53469K562SAFB2
chr77622680576226870+intron-Distal3.354676.35363K562SAFB2
chr77618913476189185+intron-Distal4.595516.32074HepG2HNRNPK
chr77662323276623303+intron-Distal5.172577.71000K562FAM120A
chr77622670676226771+intron-Distal3.175295.53952K562SAFB2
chr77662321176623317+intron-Distal3.085424.62806K562CSTF2T
chr77618890176188928+intron-Distal3.2276910.77773K562HNRNPL
chr77618885176188916+intron-Distal3.9866225.64275HepG2HNRNPL
chr77618954076189604+intron-Distal3.7187910.52957HepG2HNRNPK
chr77621769576217732+intron-Distal3.912043.06015K562MATR3
chr77622137976221421+intron-Distal3.009925.06972HepG2HLTF
chr77619553976195589+intron-Distal4.611194.78076K562HNRNPM
chr77617889176178984+intron-Distal,intron-Proximal3.422564.27261HepG2GRWD1
chr77619165576191714+intron-Distal5.1877514.49454K562EXOSC5
chr77621740976217495+intron-Distal4.197665.59811K562LSM11
chr77617895276179057+intron-Distal,intron-Proximal3.220265.37770HepG2SRSF1
chr77618873476188785+intron-Distal3.814575.42334HepG2QKI
chr77622200776222055+intron-Distal4.119397.81859K562SAFB2
chr77617887376178937+intron-Distal3.937144.27210HepG2NCBP2
chr77624979276249841+intron-Distal3.163123.78150HepG2ILF3
chr77619197476192020+intron-Distal3.889755.79523HepG2SUGP2
chr77619573776195783+intron-Distal3.993415.53207K562HNRNPM
chr77617888376178982+intron-Distal,intron-Proximal3.056404.18274K562XRCC6
chr77622115276221195+intron-Distal4.908216.79841HepG2HLTF
chr77621531676215433+intron-Distal3.0898019.33292HepG2SUGP2
chr77622623776226270+intron-Distal3.097193.46712K562SAFB2
chr77619003976190084+intron-Distal3.8368418.47356HepG2HNRNPL
chr77619523276195301+intron-Distal5.079008.39510HepG2SUGP2
chr77622406476224149+intron-Distal3.272568.22279HepG2HLTF
chr77627023076270311+intron-Distal4.171253.53509HepG2HLTF
chr77662674976626922+intron-Distal6.0989214.29284K562EWSR1
chr77662689976626950+intron-Distal5.733219.02011K562EIF4G2
chr77618959676189608+intron-Distal4.077104.27660K562HNRNPL
chr77620198176202090+intron-Distal3.124888.36674HepG2QKI
chr77662821876628279+intron-Distal5.231338.17882K562FAM120A
chr77622563876225687+intron-Distal4.794557.11415K562SAFB2
chr77622638076226456+intron-Distal3.599056.02476HepG2HLTF
chr77618958276189630+intron-Distal4.833937.16788HepG2RBFOX2
chr77619175876191804+intron-Distal3.385063.72904K562EXOSC5
chr77662821976628293+intron-Distal7.0111615.88112K562FASTKD2
chr77662675876626819+intron-Distal4.788025.67757HepG2CSTF2T
chr77662125376621307+intron-Distal3.388943.68882K562FAM120A
chr77621725876217335+intron-Distal3.341599.02719K562HNRNPL
chr77621691076216997+intron-Distal5.5282612.47895K562MATR3
chr77618866476188730+intron-Distal4.8363927.37065HepG2HNRNPL
chr77622206776222109+intron-Distal3.759933.48705K562PPIL4
chr77619196976192025+intron-Distal5.9504012.96579HepG2HNRNPM
chr77622390576223976+intron-Distal4.010988.68660K562SAFB2
chr77621850076218552+intron-Distal4.593465.03450HepG2XRCC6
chr77618900576189076+intron-Distal3.260199.06425K562HNRNPL
chr77618872676188777+intron-Distal3.279177.98995K562HNRNPL
chr77618387976183895+intron-Distal4.035407.58805HepG2HNRNPC
chr77618873676188772+intron-Distal4.3514111.44965HepG2HNRNPL
chr77618996876190016+intron-Distal3.9721616.19572HepG2HNRNPL
chr77621348676213554+intron-Distal3.966673.66349K562LIN28B
chr77620812076208228+intron-Distal3.275923.94728HepG2SAFB
chr77618912576189180+intron-Distal4.2542917.69626HepG2HNRNPL
chr77617904976179178+intron-Distal,intron-Proximal5.031666.40925HepG2SRSF9
chr77663362176633643+intron-Distal,intron-Proximal3.490025.99700HepG2AQR
chr77619163276191713+intron-Distal4.278329.30950HepG2SUGP2
chr77622637876226421+intron-Distal3.080225.56198K562SAFB2
chr77617893676178980+intron-Distal,intron-Proximal4.488445.44815HepG2PRPF4
chr77618874176188779+intron-Distal3.708366.13897K562PTBP1
chr77617887076178975+intron-Distal,intron-Proximal3.289843.54163HepG2DGCR8
chr77622516376225256+intron-Distal3.637553.25970K562PPIL4
chr77622133976221436+intron-Distal3.3963812.63922K562SAFB2
chr77617887676178968+intron-Distal3.284416.13390K562GEMIN5
chr77618323876183314+intron-Distal4.614143.41592K562XRCC6
chr77618526176185336+intron-Distal4.633987.23320K562KHDRBS1
chr77622451576224566+intron-Distal3.910276.52185HepG2HLTF
chr77622644576226504+intron-Distal4.088768.00568K562SAFB2
chr77622581976225884+intron-Distal3.226657.33834K562SAFB2
chr77620911976209179+intron-Distal3.256483.95154K562SAFB2
chr77618934476189412+intron-Distal3.949053.48223HepG2RBFOX2
chr77625609076256173+intron-Distal6.2662015.97498HepG2SLTM
chr77662819176628292+intron-Distal6.8001127.43831HepG2FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UPK3B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UPK3B is not available on ENCORE database.

  • No RBPs affect the gene expression of UPK3B on ENCORE database.


The Knockdown/knockout RNA-Seq assay for UPK3B is not available on ENCORE database.






No RBPs affect the gene expression of UPK3B on ENCORE database.






The Knockdown/knockout RNA-Seq assay for UPK3B is not available on ENCORE database.






No RBPs affect the alternative splcing events of UPK3B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for UPK3B is not avaliable on ENCORE database.