ABR

General Information

Gene Name       : ABR
Gene ID             : ENSG00000159842.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ABR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ABRENSG00000159842.1525.5426.9126.23ENCSR000AEF
HepG2ABRENSG00000159842.1522.3510.8516.60ENCSR985KAT
K562ABRENSG00000159842.150.510.290.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ABR is not avaliable on ENCORE database.



Proteins bound to RNA
  • ABR RNA is bound by 6 proteins.  







eCLIP assay for ABR is not avaliable on ENCORE database.





6 proteins are bound to ABR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr17915039915114-3'-UTR,CDS,intron-Distal,intron-Proximal5.035515.35117HepG2PRPF8
chr17934905935003-5'-UTR,CDS,intron-Distal5.234839.85717HepG2CSTF2T
chr17935041935094-5'-UTR,intron-Distal,intron-Proximal5.094124.86316HepG2FAM120A
chr17953244953301-CDS,intron-Distal,intron-Proximal3.522743.71591HepG2PRPF8
chr1710121821012279-CDS,intron-Distal3.847414.13746HepG2PPIG
chr17982525982581-CDS,intron-Distal,intron-Proximal4.747765.01842HepG2PRPF8
chr17941315941381-intron-Distal4.895796.32277HepG2CSTF2T
chr17938241938319-intron-Distal4.142873.30705HepG2GTF2F1
chr17933069933139-intron-Distal4.242444.43799HepG2CSTF2T
chr17941701941748-intron-Distal3.424094.14880HepG2CSTF2T
chr17939030939089-intron-Distal4.908176.62861HepG2FAM120A
chr17945253945342-intron-Distal3.942353.69819HepG2CSTF2T
chr17938012938047-intron-Distal4.588675.74291HepG2FAM120A
chr17938425938495-intron-Distal4.8168713.08251HepG2CSTF2T
chr17937808937863-intron-Distal5.3836711.79564HepG2CSTF2T
chr17937966937999-intron-Distal4.666085.84605HepG2CSTF2T
chr17939340939400-intron-Distal5.142488.71133HepG2FAM120A
chr17951269951356-intron-Distal4.942356.05659HepG2CSTF2T
chr17934687934760-intron-Distal4.974436.92491HepG2FAM120A
chr17940682940728-intron-Distal4.751045.84605HepG2CSTF2T
chr17933964934005-intron-Distal3.195533.92299HepG2CSTF2T
chr17934697934749-intron-Distal4.676825.60609HepG2CSTF2T
chr17950957950997-intron-Distal3.898413.16310HepG2CSTF2T
chr17942674942724-intron-Distal3.734835.86001HepG2CSTF2T
chr17940862940914-intron-Distal4.638516.32277HepG2CSTF2T
chr17938461938491-intron-Distal4.981517.83501HepG2FAM120A
chr17956721956789-intron-Distal3.986853.16310HepG2CSTF2T
chr1710120951012155-intron-Distal4.176823.87340HepG2CSTF2T
chr17937999938069-intron-Distal5.496049.85717HepG2CSTF2T
chr17949745949826-intron-Distal3.166083.69530HepG2CSTF2T
chr17936826936923-intron-Distal3.633286.71496HepG2CSTF2T
chr17937816937861-intron-Distal4.696746.03756HepG2FAM120A
chr17938069938139-intron-Distal5.5096111.61783HepG2CSTF2T
chr17943696943744-intron-Distal4.668485.36332HepG2CSTF2T
chr17941783941840-intron-Distal3.694376.05986HepG2CSTF2T
chr17929754929842-intron-Distal4.247834.36133HepG2CSTF2T
chr17937520937558-intron-Distal4.502865.60609HepG2CSTF2T
chr1710000751000202-intron-Distal3.900993.17235HepG2HNRNPK
chr17935390935427-intron-Distal3.384344.60046HepG2CSTF2T
chr17941595941626-intron-Distal4.382565.11753HepG2CSTF2T
chr17939006939091-intron-Distal5.6681812.12716HepG2CSTF2T
chr17938512938570-intron-Distal5.2238210.46053HepG2CSTF2T
chr17939697939742-intron-Distal3.357396.59225HepG2CSTF2T
chr17939611939664-intron-Distal4.710385.60609HepG2CSTF2T
chr17933294933350-intron-Distal4.707546.08348HepG2CSTF2T
chr17939332939403-intron-Distal5.6615610.82255HepG2CSTF2T
chr17934339934389-intron-Distal3.486853.69530HepG2CSTF2T
chr17939224939258-intron-Distal4.142483.99130HepG2FAM120A
chr17938515938586-intron-Distal6.3785219.23385HepG2FAM120A
chr17935450935503-intron-Distal4.668485.36332HepG2CSTF2T
chr17940459940532-intron-Distal5.205557.84504HepG2CSTF2T
chr17940970941020-intron-Distal4.862246.84460HepG2CSTF2T
chr17943152943198-intron-Distal4.493755.11753HepG2CSTF2T
chr17938251938315-intron-Distal4.284258.26134HepG2FAM120A
chr17952192952268-intron-Distal3.882564.84557HepG2CSTF2T
chr17934286934309-intron-Distal3.871793.40229HepG2CSTF2T
chr17937145937183-intron-Distal4.221594.36133HepG2CSTF2T
chr17941313941401-intron-Distal4.907395.74291HepG2FAM120A
chr17938248938335-intron-Distal6.5096120.73228HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ABR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ABR is not available on ENCORE database.

  • 109 RBPs can affect the levels of ABR.  








The Knockdown/knockout RNA-Seq assay for ABR is not available on ENCORE database.





109 RBPs can affect the gene expression of ABR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ABRENSG00000159842.10663.064501022.81310-0.625303.768002.67680HepG2ABCF1
ABRENSG00000159842.101658.00530725.132901.1930019.3969018.10470HepG2ACO1
ABRENSG00000159842.10496.29190654.93050-0.400202.476701.53260HepG2ADAR
ABRENSG00000159842.102905.33690649.480402.1612055.6850053.78450HepG2AKAP1
ABRENSG00000159842.101443.456501106.659800.383205.070104.18720HepG2AUH
ABRENSG00000159842.10777.91640588.052100.403602.199001.39680HepG2BCLAF1
ABRENSG00000159842.101129.53090766.015100.560204.098702.61230HepG2BUD13
ABRENSG00000159842.10970.00060797.937700.281602.077401.40260HepG2CALR
ABRENSG00000159842.10981.49400724.922700.437106.067205.15220HepG2CKAP4
ABRENSG00000159842.10590.30040961.44620-0.703807.308106.23260HepG2CPSF6
ABRENSG00000159842.101599.19020841.931200.9255016.0287013.64230HepG2CPSF7
ABRENSG00000159842.10251.24960418.00960-0.734405.623104.17000HepG2CSTF2
ABRENSG00000159842.102028.63900887.218801.1931042.4256040.51820HepG2CELF1
ABRENSG00000159842.10987.86900672.565200.554506.087704.43550HepG2DDX1
ABRENSG00000159842.10350.29990578.00480-0.722507.055105.60950HepG2DDX24
ABRENSG00000159842.101201.34200622.076500.9494011.8102010.60120HepG2DDX3X
ABRENSG00000159842.101776.45110665.444101.4165018.8516017.09850HepG2DDX55
ABRENSG00000159842.10598.76620842.03260-0.491903.926102.72950HepG2DDX5
ABRENSG00000159842.101356.70090534.557101.3436020.4381018.96780HepG2DDX6
ABRENSG00000159842.10448.33240636.07550-0.504603.891802.73910HepG2DHX30
ABRENSG00000159842.101077.01810653.646700.7204015.9305014.49110HepG2DNAJC2
ABRENSG00000159842.10802.57310543.914500.561202.375601.35410HepG2AGO1
ABRENSG00000159842.101078.99630513.703501.0706014.2425012.96730HepG2EIF2S1
ABRENSG00000159842.101244.77720775.608300.682408.650906.73870HepG2EIF2S2
ABRENSG00000159842.10868.16860542.944400.677105.885404.60180HepG2EIF3D
ABRENSG00000159842.10416.41470557.79560-0.421702.994901.87530HepG2EIF3G
ABRENSG00000159842.10362.64470567.61610-0.646404.403103.60070HepG2EIF4A3
ABRENSG00000159842.10910.96790552.819400.720505.012004.10540HepG2EIF4B
ABRENSG00000159842.10681.74720901.57260-0.403202.922802.08740HepG2EIF4G2
ABRENSG00000159842.10502.22600885.77350-0.818608.438806.68330HepG2ESF1
ABRENSG00000159842.101769.533601270.669500.477707.805706.88330HepG2ETF1
ABRENSG00000159842.101023.51610708.537800.530505.585204.39420HepG2EWSR1
ABRENSG00000159842.10733.34130562.897700.381502.620901.50360HepG2FASTKD2
ABRENSG00000159842.102471.474801032.717301.2588021.1768019.41420HepG2FIP1L1
ABRENSG00000159842.10596.91170963.05540-0.690102.563001.58820HepG2FTO
ABRENSG00000159842.10969.29860651.559400.572903.601802.32930HepG2FUS
ABRENSG00000159842.10964.03080572.963100.750507.466406.37090HepG2FXR1
ABRENSG00000159842.101255.09750531.369301.2399018.8789017.21600HepG2G3BP1
ABRENSG00000159842.101117.58830603.774200.8882010.576208.55110HepG2GNB2L1
ABRENSG00000159842.101088.20960692.262500.6525011.8405010.03270HepG2HDGF
ABRENSG00000159842.10445.55570665.81130-0.579504.633503.82650HepG2HNRNPA1
ABRENSG00000159842.101327.17780876.738800.5980010.350208.75820HepG2HNRNPA2B1
ABRENSG00000159842.10546.24160740.58420-0.439103.064502.33980HepG2HNRNPC
ABRENSG00000159842.10985.663701192.22760-0.274502.424001.75010HepG2HNRNPF
ABRENSG00000159842.101195.19990538.381801.1505012.8491011.45310HepG2HNRNPK
ABRENSG00000159842.10740.385301040.13110-0.490403.825503.09550HepG2HNRNPLL
ABRENSG00000159842.101224.43390712.313100.7814011.089909.41860HepG2HNRNPM
ABRENSG00000159842.10871.24460735.688500.243901.984701.46170HepG2HNRNPU
ABRENSG00000159842.101294.91340957.768700.435002.704001.49260HepG2HSPD1
ABRENSG00000159842.10862.756301174.01440-0.444404.399603.50400HepG2IGF2BP1
ABRENSG00000159842.10953.01030540.076200.819208.515307.40020HepG2IGF2BP2
ABRENSG00000159842.101018.21870751.482800.438106.470705.39690HepG2ILF2
ABRENSG00000159842.10742.65990534.393200.474703.401401.59200HepG2CCAR2
ABRENSG00000159842.10861.61300662.829700.378304.454903.17370HepG2KIF1C
ABRENSG00000159842.10967.25980591.598100.709207.813405.99360HepG2LARP7
ABRENSG00000159842.10423.69460573.16430-0.435902.503401.87810HepG2MAGOH
ABRENSG00000159842.10909.89820576.329600.658705.176404.33830HepG2MATR3
ABRENSG00000159842.101102.79170568.226800.956507.232405.61990HepG2METAP2
ABRENSG00000159842.101156.13170835.468400.468504.107603.13040HepG2MSI2
ABRENSG00000159842.10895.07440589.870700.601504.086103.32050HepG2NCBP2
ABRENSG00000159842.101547.92130945.974700.7104012.9275011.33580HepG2NOL12
ABRENSG00000159842.10306.77580922.23810-1.5880027.9092025.93960HepG2NSUN2
ABRENSG00000159842.10919.59680728.215300.336503.247402.33660HepG2PARN
ABRENSG00000159842.10953.65590561.665100.7637013.8133012.62170HepG2PCBP1
ABRENSG00000159842.10493.64690873.72540-0.8237014.5661013.01030HepG2PRPF4
ABRENSG00000159842.101050.56700571.537800.8781018.1159016.94810HepG2PTBP1
ABRENSG00000159842.101244.69390958.583000.376705.663304.87740HepG2PUM1
ABRENSG00000159842.10862.30830618.941500.478304.804704.01520HepG2QKI
ABRENSG00000159842.101618.21230594.904501.4436014.8434013.33370HepG2RAVER1
ABRENSG00000159842.101822.772201034.975700.8164014.3022012.59310HepG2RBM15
ABRENSG00000159842.101305.676701062.028700.297902.799602.27910HepG2RBM22
ABRENSG00000159842.10771.92220561.747400.458403.868303.08160HepG2RBM25
ABRENSG00000159842.101021.494001284.16310-0.330102.336301.70000HepG2RPLP0
ABRENSG00000159842.10853.11340528.329500.691207.754106.78670HepG2RPS19
ABRENSG00000159842.10880.96590671.605000.391402.313501.33600HepG2RPS5
ABRENSG00000159842.101007.60280507.709000.9888010.710709.31790HepG2RRP9
ABRENSG00000159842.10862.52760530.228200.701906.887505.41880HepG2SERBP1
ABRENSG00000159842.10427.00690744.33860-0.801706.141905.11380HepG2SF3A3
ABRENSG00000159842.101139.83980595.004200.9378020.7614019.38920HepG2SF3B4
ABRENSG00000159842.101240.93500764.043900.6996016.5107015.14110HepG2SMN1
ABRENSG00000159842.101034.09690607.866000.766406.385404.88340HepG2SMNDC1
ABRENSG00000159842.101102.41750531.297001.053003.707802.13880HepG2SNRNP200
ABRENSG00000159842.10818.107901145.54850-0.485702.526901.78160HepG2SNRNP70
ABRENSG00000159842.101908.144001199.494400.6696016.7622015.80250HepG2SRFBP1
ABRENSG00000159842.101718.06740891.587800.9462028.2722026.55940HepG2SRSF5
ABRENSG00000159842.10964.988701171.28770-0.279502.489901.82580HepG2SRSF7
ABRENSG00000159842.10688.40640505.289400.446104.778204.09020HepG2SRSF9
ABRENSG00000159842.10352.739101041.39620-1.5618036.8267035.45310HepG2SSB
ABRENSG00000159842.10813.83050556.018000.549502.925901.68730HepG2SUB1
ABRENSG00000159842.101276.413401013.985300.332004.144703.41080HepG2SUCLG1
ABRENSG00000159842.10960.10400662.416100.535403.524802.77470HepG2SUPV3L1
ABRENSG00000159842.10659.86450443.980200.571603.330102.24390HepG2TFIP11
ABRENSG00000159842.10650.55760512.943500.342802.368601.59370HepG2TIA1
ABRENSG00000159842.10911.66740714.887700.350703.034802.51500HepG2TIAL1
ABRENSG00000159842.101423.56460721.247300.9808028.4553026.88620HepG2TRIM56
ABRENSG00000159842.101687.14340933.787800.8533010.328908.67630HepG2UBE2L3
ABRENSG00000159842.10846.68920660.113100.359003.732402.94060HepG2UPF1
ABRENSG00000159842.10374.41760606.50930-0.695904.330603.05880HepG2UPF2
ABRENSG00000159842.10461.74740637.31550-0.464904.433903.70430HepG2UTP3
ABRENSG00000159842.10872.58390585.417500.575703.438902.01290HepG2XRCC5
ABRENSG00000159842.10330.06170652.07670-0.9823010.118008.75090HepG2XRN2
ABRENSG00000159842.10365.29570862.25050-1.2390031.4709029.67740HepG2ZC3H8
ABRENSG00000159842.101074.23540726.000100.5652010.418309.52730HepG2ZNF622
ABRENSG00000159842.1047.0971016.583801.505802.890801.41530K562CKAP4
ABRENSG00000159842.1020.2924043.04170-1.084802.059001.31490K562DKC1
ABRENSG00000159842.1050.8368016.657101.609603.788102.96830K562EIF2S2
ABRENSG00000159842.1045.7729014.308501.677503.249102.39080K562GPKOW
ABRENSG00000159842.1063.3653013.616602.218206.262005.39900K562HNRNPC
ABRENSG00000159842.1051.1883012.205402.068204.648503.43190K562PSIP1
ABRENSG00000159842.1011.6891039.67050-1.762903.073202.50610K562PUS1
ABRENSG00000159842.1031.138408.948401.798902.191101.46800K562RPS19
ABRENSG00000159842.1065.7484016.985501.952606.202505.10660K562TARDBP
ABRENSG00000159842.1036.665809.002302.026003.177502.08350K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ABR is not available on ENCORE database.





3 RBPs can affect the splicing of ABR :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEABRENSG00000159842.10chr17-9157139157979150859152259159279160370.176000.002830.06163includedHepG2HNRNPK
SEABRENSG00000159842.10chr17-9157139157979150859152259159279160050.145000.001500.01985includedHepG2U2AF2
SEABRENSG00000159842.10chr17-914844914901913968914103915085915225-0.113000.000590.09303excludedHepG2DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ABR is not avaliable on ENCORE database.