LGALS1

General Information

Gene Name : LGALS1
Gene ID : ENSG00000100097.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LGALS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LGALS1	ENSG00000100097.11	35.66	212.65	124.16	ENCSR000AEF
HepG2	LGALS1	ENSG00000100097.11	375.60	80.78	228.19	ENCSR985KAT
K562	LGALS1	ENSG00000100097.11	215.51	126.86	171.19	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	LGALS1-BG293LV06-WT293		LGALS1	293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
LGALS1	293T	shRNA			LGALS1-BG293LV02-23,LGALS1-BG293LV02-24	NT-BG293LV02-1,NT-BG293LV02-2	,	Revoked	ENCORE2
LGALS1	293T	shRNA			LGALS1-BG293LV06-101B,LGALS1-BG293LV06-102B	NT-BG293LV06-1B,NT-BG293LV06-2B	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LGALS1 is not avaliable on ENCORE database.

Proteins bound to RNA

LGALS1 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for LGALS1 is not avaliable on ENCORE database.

10 proteins are bound to LGALS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	38075609	38075658	+	3'-UTR,CDS,intron-Proximal	5.84153	86.34689	K562	RPS3
chr22	38075609	38075659	+	3'-UTR,CDS,intron-Proximal	5.39769	73.87670	K562	PABPC4
chr22	38075681	38075755	+	3'-UTR,CDS	5.00902	67.91385	K562	PABPC4
chr22	38072991	38073041	+	CDS,intron-Proximal	4.32608	53.78845	K562	DDX3X
chr22	38071657	38071708	+	5'-UTR	4.98835	53.44927	K562	DDX3X
chr22	38071708	38071719	+	5'-UTR,CDS,intron-Proximal	4.66212	28.74396	K562	DDX3X
chr22	38073027	38073065	+	5'-UTR,CDS	6.15090	27.58958	K562	RPS3
chr22	38074624	38074647	+	3'-UTR,CDS	6.28706	27.26004	K562	PABPC4
chr22	38075609	38075649	+	3'-UTR,CDS,intron-Proximal	5.28117	27.02702	K562	LIN28B
chr22	38075709	38075730	+	3'-UTR,CDS	3.47138	25.34961	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 42 entries

eCLIP assay for LGALS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LGALS1 is not available on ENCORE database.
167 RBPs can affect the levels of LGALS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LGALS1 is not available on ENCORE database.

167 RBPs can affect the gene expression of LGALS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LGALS1	ENSG00000100097.7	4236.22120	1229.26740	1.78490	148.22160	145.59960	HepG2	ACO1
LGALS1	ENSG00000100097.7	332.70980	1804.80310	-2.43950	142.31220	140.17100	HepG2	SSB
LGALS1	ENSG00000100097.7	1746.15780	427.22150	2.03100	124.82260	122.65440	HepG2	ZNF622
LGALS1	ENSG00000100097.7	8070.94420	687.21690	3.55380	115.08630	112.08990	HepG2	DDX6
LGALS1	ENSG00000100097.7	5443.29520	1917.87580	1.50490	102.78990	99.86990	HepG2	AUH
LGALS1	ENSG00000100097.7	4437.41760	1253.71880	1.82340	102.72950	99.24370	HepG2	NOL12
LGALS1	ENSG00000100097.7	2151.44170	673.55240	1.67530	93.66990	91.42730	HepG2	SRSF9
LGALS1	ENSG00000100097.7	4827.49390	831.93210	2.53660	79.48710	76.43400	HepG2	DDX55
LGALS1	ENSG00000100097.7	237.13600	1202.13740	-2.34180	77.71840	74.52350	K562	POLR2G
LGALS1	ENSG00000100097.7	3643.07570	693.87530	2.39230	72.47310	69.68170	HepG2	IGF2BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 218 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LGALS1 is not available on ENCORE database.

3 RBPs can affect the splicing of LGALS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LGALS1	ENSG00000100097.7	chr22	+	38074489	38074661	38072992	38073072	38075609	38075647	-0.07000	0.00000	0.00029	excluded	K562	XRCC6
SE	LGALS1	ENSG00000100097.7	chr22	+	38074489	38074661	38072992	38073072	38075609	38075647	-0.08400	0.00000	0.00000	excluded	K562	HNRNPC
SE	LGALS1	ENSG00000100097.7	chr22	+	38074382	38074661	38073005	38073072	38075609	38075809	0.05800	0.00001	0.00374	included	K562	UPF1

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LGALS1

General Information

Functions

Localization

Domains (AlphaFold: LGALS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LGALS1 is not avaliable on ENCORE database.

10 proteins are bound to LGALS1 RNA:

eCLIP assay for LGALS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LGALS1 is not available on ENCORE database.

167 RBPs can affect the gene expression of LGALS1 :

The Knockdown/knockout RNA-Seq assay for LGALS1 is not available on ENCORE database.

3 RBPs can affect the splicing of LGALS1 :

The Knockdown/knockout RNA-Seq assay for LGALS1 is not avaliable on ENCORE database.