CCHCR1

General Information

Gene Name       : CCHCR1
Gene ID             : ENSG00000204536.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCHCR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCHCR1ENSG00000204536.1313.7015.4014.55ENCSR000AEF
HepG2CCHCR1ENSG00000204536.1324.5820.5922.59ENCSR985KAT
K562CCHCR1ENSG00000204536.1326.0819.7122.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCHCR1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCHCR1 RNA is bound by 15 proteins.  







eCLIP assay for CCHCR1 is not avaliable on ENCORE database.





15 proteins are bound to CCHCR1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63111827331118343-3'-UTR,CDS,intron-Distal,intron-Proximal3.988705.58370HepG2PPIG
chr63112489031124899-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.8605923.84012K562AQR
chr63112483631124910-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.595576.37739K562BUD13
chr63111850231118557-3'-UTR,CDS,intron-Distal,intron-Proximal5.078284.17466K562DDX24
chr63112488731124937-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.185544.83371K562EFTUD2
chr63112450631124556-3'-UTR,CDS,intron-Distal,intron-Proximal4.324265.24452HepG2PPIG
chr63111825331118339-3'-UTR,CDS,intron-Distal,intron-Proximal4.033764.23295HepG2GRWD1
chr63112450731124615-3'-UTR,CDS,intron-Distal,intron-Proximal3.035653.46769K562YBX3
chr63112483431124923-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.9172412.49865HepG2AQR
chr63112482631124890-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.8386235.69732K562AQR
chr63111874131118806-3'-UTR,CDS,intron-Distal,intron-Proximal3.270704.68592HepG2PPIG
chr63111860331118635-3'-UTR,CDS,intron-Distal,intron-Proximal4.878374.38106HepG2PPIG
chr63111851831118601-3'-UTR,CDS,intron-Distal,intron-Proximal3.267143.70975K562UCHL5
chr63112580431125898-5'-UTR,intron-Distal,intron-Proximal4.052614.12529K562GTF2F1
chr63112588831125945-5'-UTR,intron-Distal,intron-Proximal5.083455.01842HepG2PRPF8
chr63112585731125919-5'-UTR,intron-Distal,intron-Proximal3.7589515.45625K562AQR
chr63112580131125888-5'-UTR,intron-Distal,intron-Proximal4.056308.47952HepG2PRPF8
chr63112580331125877-5'-UTR,intron-Distal,intron-Proximal3.182334.85905K562EFTUD2
chr63112580631125922-5'-UTR,intron-Distal,intron-Proximal6.0267830.17120HepG2AQR
chr63112580031125857-5'-UTR,intron-Distal,intron-Proximal4.4641618.08505K562AQR
chr63112580931125915-5'-UTR,intron-Distal,intron-Proximal3.720393.87304HepG2FAM120A
chr63112580431125896-5'-UTR,intron-Distal,intron-Proximal4.916376.40009HepG2GTF2F1
chr63112591931125937-5'-UTR,intron-Distal,intron-Proximal3.623633.04871K562AQR
chr63111037931110438-CDS,intron-Distal4.048893.15006K562RBM15
chr63111304631113124-CDS,intron-Distal,intron-Proximal4.085695.34865HepG2EFTUD2
chr63111260231112688-CDS,intron-Distal,intron-Proximal5.657478.38577HepG2PRPF8
chr63112231331122442-CDS,intron-Distal,intron-Proximal3.241245.20715K562FXR2
chr63111249531112565-CDS,intron-Distal,intron-Proximal3.074493.84692K562UCHL5
chr63111076731110825-CDS,intron-Distal,intron-Proximal3.720105.30777HepG2PPIG
chr63111104931111095-CDS,intron-Distal3.593534.24993HepG2PPIG
chr63111278431112850-CDS,intron-Distal,intron-Proximal3.062484.85880HepG2PPIG
chr63111252431112571-CDS,intron-Distal,intron-Proximal3.176766.70384HepG2PPIG
chr63111320131113294-CDS,intron-Distal,intron-Proximal4.1397311.64859K562AQR
chr63112228231122360-CDS,intron-Distal,intron-Proximal3.843744.24993HepG2PPIG
chr63111623631116279-CDS,intron-Distal3.223453.73413HepG2PPIG
chr63111625231116288-CDS,intron-Distal4.199874.11693K562BUD13
chr63111305431113136-CDS,intron-Distal,intron-Proximal3.748779.96904K562SF3B4
chr63111355331113617-CDS,intron-Distal,intron-Proximal3.831157.16374K562AQR
chr63111325931113333-CDS,intron-Distal,intron-Proximal4.276729.71879K562SF3B4
chr63111046131110540-CDS,intron-Distal4.082438.75853K562SF3B4
chr63112243231122524-CDS,intron-Distal,intron-Proximal4.4421511.01413HepG2PPIG
chr63112255731122574-CDS,intron-Distal,intron-Proximal4.627123.79199HepG2PPIG
chr63111823731118273-CDS,intron-Distal,intron-Proximal3.647443.32039HepG2PPIG
chr63111791231117963-CDS,intron-Distal3.960775.24452HepG2PPIG
chr63111346031113473-intron-Distal,intron-Proximal4.521568.30573K562AQR
chr63111776531117843-intron-Distal,intron-Proximal3.942347.30031K562AQR
chr63111342931113460-intron-Distal,intron-Proximal4.612279.08030K562AQR
chr63111609731116151-intron-Distal,intron-Proximal4.828674.75882HepG2RBM22
chr63111120731111257-intron-Distal,intron-Proximal3.879513.25678HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCHCR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCHCR1 is not available on ENCORE database.

  • 71 RBPs can affect the levels of CCHCR1.  








The Knockdown/knockout RNA-Seq assay for CCHCR1 is not available on ENCORE database.





71 RBPs can affect the gene expression of CCHCR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCHCR1ENSG00000204536.9422.05910276.264400.611304.033902.85400HepG2ADAR
CCHCR1ENSG00000204536.9211.72970295.84870-0.482602.238701.69480HepG2BOP1
CCHCR1ENSG00000204536.9229.31180377.26550-0.718305.138804.12750HepG2CALR
CCHCR1ENSG00000204536.9344.81570584.51810-0.7614010.709609.57500HepG2CKAP4
CCHCR1ENSG00000204536.9379.27160283.308300.420802.487401.52520HepG2YBX3
CCHCR1ENSG00000204536.9293.07700397.66340-0.440302.430001.57900HepG2DDX24
CCHCR1ENSG00000204536.9275.23200387.85390-0.494902.731201.96200HepG2DDX55
CCHCR1ENSG00000204536.9391.42130275.734400.505304.183103.41240HepG2DNAJC2
CCHCR1ENSG00000204536.9195.49150374.17910-0.936606.293204.63630HepG2AGO1
CCHCR1ENSG00000204536.9232.29330365.08890-0.652304.159103.06680HepG2EIF3D
CCHCR1ENSG00000204536.9638.35140465.655000.455002.484701.87800HepG2EIF4A3
CCHCR1ENSG00000204536.9483.32900615.15730-0.347902.458501.66200HepG2EIF4G1
CCHCR1ENSG00000204536.9739.36990470.164700.653004.338703.48650HepG2FXR1
CCHCR1ENSG00000204536.9415.96770558.15730-0.424203.807202.67550HepG2HDGF
CCHCR1ENSG00000204536.9441.21070280.845400.651604.646503.83840HepG2HNRNPA1
CCHCR1ENSG00000204536.9339.77830573.03560-0.754007.058805.68450HepG2HNRNPA2B1
CCHCR1ENSG00000204536.9412.55610312.392100.401101.975101.37840HepG2HNRNPC
CCHCR1ENSG00000204536.9744.48440441.873300.752505.416704.46370HepG2HNRNPK
CCHCR1ENSG00000204536.9285.32330443.08940-0.635002.305101.68250HepG2IGF2BP2
CCHCR1ENSG00000204536.9421.72980316.987700.411802.980102.22080HepG2ILF2
CCHCR1ENSG00000204536.9329.33590210.996100.642202.881501.52760HepG2ILF3
CCHCR1ENSG00000204536.9332.95280206.318800.690303.722702.30530HepG2KHDRBS1
CCHCR1ENSG00000204536.9440.33630639.33070-0.538003.049402.17420HepG2LARP4
CCHCR1ENSG00000204536.9764.44380470.330300.700604.683903.83680HepG2MAGOH
CCHCR1ENSG00000204536.9784.73020618.266000.343902.813102.04300HepG2NOL12
CCHCR1ENSG00000204536.9550.96230444.210300.310602.093201.55350HepG2PCBP1
CCHCR1ENSG00000204536.9400.39330276.785900.532503.985203.11680HepG2PPIL4
CCHCR1ENSG00000204536.9191.00290299.02140-0.646703.648102.73500HepG2PRPF8
CCHCR1ENSG00000204536.9521.94530626.53590-0.263501.870901.36270HepG2PUM1
CCHCR1ENSG00000204536.9174.83590379.30710-1.117406.031305.01700HepG2RAVER1
CCHCR1ENSG00000204536.9436.40800562.32530-0.365702.360601.56190HepG2RBM15
CCHCR1ENSG00000204536.9338.22000769.07350-1.1852021.0649019.90730HepG2RBM22
CCHCR1ENSG00000204536.9799.14550503.030100.667707.043406.24900HepG2NELFE
CCHCR1ENSG00000204536.9796.82540468.487400.7662011.3033010.18620HepG2RECQL
CCHCR1ENSG00000204536.9245.96830355.26200-0.530403.117602.46990HepG2RPS19
CCHCR1ENSG00000204536.9310.13320217.414700.512302.088401.39280HepG2RPS3A
CCHCR1ENSG00000204536.9134.28320295.77670-1.139206.704705.54040HepG2RRP9
CCHCR1ENSG00000204536.9455.60330276.357400.721107.720006.72480HepG2SAFB2
CCHCR1ENSG00000204536.9234.80430356.53790-0.602603.446802.39330HepG2SERBP1
CCHCR1ENSG00000204536.9387.32520608.94030-0.652803.970603.15640HepG2SF3A3
CCHCR1ENSG00000204536.9625.36490868.61150-0.474005.475004.83580HepG2SRFBP1
CCHCR1ENSG00000204536.9355.46360491.19560-0.466603.543103.02450HepG2SRSF1
CCHCR1ENSG00000204536.9976.37230754.110200.372604.010203.41740HepG2SSB
CCHCR1ENSG00000204536.9295.56810189.162900.643803.276802.07020HepG2STIP1
CCHCR1ENSG00000204536.9213.89010354.50750-0.728903.174801.87980HepG2SUB1
CCHCR1ENSG00000204536.9285.75930386.05140-0.434002.243501.62570HepG2SUPV3L1
CCHCR1ENSG00000204536.9175.17220258.72550-0.562602.555101.59280HepG2TFIP11
CCHCR1ENSG00000204536.9405.89480301.527000.428702.602502.11500HepG2TIAL1
CCHCR1ENSG00000204536.9304.03160495.22560-0.703904.837804.02000HepG2U2AF1
CCHCR1ENSG00000204536.9384.45300540.03820-0.490304.480803.62800HepG2UPF1
CCHCR1ENSG00000204536.9304.75370194.744700.646003.094901.92880HepG2XPO5
CCHCR1ENSG00000204536.9285.69070417.26580-0.546502.536801.52640HepG2XRCC6
CCHCR1ENSG00000204536.9736.03010380.026800.953608.424707.17280HepG2XRN2
CCHCR1ENSG00000204536.9478.97370593.93690-0.310402.504001.97610HepG2ZNF622
CCHCR1ENSG00000204536.91492.472801097.203000.443807.077406.23100K562AGGF1
CCHCR1ENSG00000204536.9871.613401233.60800-0.501104.335803.63300K562AQR
CCHCR1ENSG00000204536.9864.38920684.896400.335703.178102.15280K562BCLAF1
CCHCR1ENSG00000204536.91060.664901311.17160-0.305902.465701.36690K562CCDC124
CCHCR1ENSG00000204536.9677.26220519.595900.382202.979601.88100K562CSTF2
CCHCR1ENSG00000204536.9181.13100357.53950-0.981104.122403.21840K562G3BP2
CCHCR1ENSG00000204536.9925.698201153.94010-0.318002.454001.61180K562HNRNPU
CCHCR1ENSG00000204536.9831.24480582.370100.513203.309302.15220K562IGF2BP2
CCHCR1ENSG00000204536.9209.36170340.18790-0.700303.494202.43010K562KRR1
CCHCR1ENSG00000204536.9828.68800611.705500.437903.607802.64050K562MAGOH
CCHCR1ENSG00000204536.91360.039701132.155300.264501.841201.38000K562PUS1
CCHCR1ENSG00000204536.9454.19550617.62150-0.443402.910201.42580K562SDAD1
CCHCR1ENSG00000204536.9878.790601067.40770-0.280502.355601.59770K562SF3A3
CCHCR1ENSG00000204536.9259.00650378.90900-0.548902.663501.70830K562SF3B1
CCHCR1ENSG00000204536.9785.44380550.397900.512904.301202.94640K562SRSF5
CCHCR1ENSG00000204536.9897.27640589.633100.605605.681504.64680K562TARDBP
CCHCR1ENSG00000204536.9852.32460568.789500.583403.338102.42800K562TIA1
CCHCR1ENSG00000204536.9779.80110558.347800.481803.793802.48210K562TRA2A
CCHCR1ENSG00000204536.9267.72910357.71130-0.418002.395601.64850K562U2AF2
CCHCR1ENSG00000204536.9864.383301020.58970-0.239702.207801.44440K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCHCR1 is not available on ENCORE database.





14 RBPs can affect the splicing of CCHCR1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCHCR1ENSG00000204536.9chr6-311251343112527731124799311248663112594331125991-0.112000.001510.02934excludedK562SRSF1
SECCHCR1ENSG00000204536.9chr6-311251613112527731124799311248663112594331125994-0.290000.000050.00165excludedHepG2U2AF1
SECCHCR1ENSG00000204536.9chr6-311251613112527731124799311248663112594331125994-0.248000.000460.01358excludedHepG2SRSF1
SECCHCR1ENSG00000204536.9chr6-311124633111256531111038311111903111266131112850-0.266000.001420.03390excludedHepG2SRSF1
SECCHCR1ENSG00000204536.9chr6-3112513431125277311247993112486631125943311259910.221000.000010.00052includedK562HNRNPU
SECCHCR1ENSG00000204536.9chr6-311251613112527731124799311248663112594331125994-0.286000.000030.00946excludedHepG2DDX55
SECCHCR1ENSG00000204536.9chr6-3112516131125277311247993112486631125943311259940.422000.000000.00055includedHepG2HNRNPU
SECCHCR1ENSG00000204536.9chr6-311251613112527731124799311248663112594331125994-0.105000.000410.08589excludedK562SERBP1
A3SSCCHCR1ENSG00000204536.9chr6-3111322431113358311132243111327031113472311136730.060000.002600.01626longerK562AQR
A3SSCCHCR1ENSG00000204536.9chr6-3111347231113673311134723111358531116181311162880.088000.004510.02638longerK562AQR
RICCHCR1ENSG00000204536.9chr6-3112450731124866311245073112472131124799311248660.089000.000000.00006includedHepG2SF3A3
RICCHCR1ENSG00000204536.9chr6-3111246331112850311124633111256531112661311128500.146000.001190.02978includedK562HNRNPC
RICCHCR1ENSG00000204536.9chr6-3112450731124866311245073112461331124799311248660.177000.004110.09904includedK562HNRNPUL1
RICCHCR1ENSG00000204536.9chr6-3112450731124866311245073112472131124799311248660.063000.000000.00003includedK562BUD13
RICCHCR1ENSG00000204536.9chr6-3111246331112850311124633111256531112661311128500.098000.000670.03683includedK562SBDS
RICCHCR1ENSG00000204536.9chr6-3111246331112850311124633111256531112661311128500.198000.001110.06579includedK562SAFB
RICCHCR1ENSG00000204536.9chr6-3112450731124866311245073112472131124799311248660.107000.000000.00000includedK562AQR
RICCHCR1ENSG00000204536.9chr6-3111246331112850311124633111256531112661311128500.144000.001060.01939includedK562FXR1
MXECCHCR1ENSG00000204536.9chr6-3112227231122576311245073112472131118735311188993112479931124866-0.143000.001390.071832includedK562LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCHCR1 is not avaliable on ENCORE database.