RASSF4

General Information

Gene Name       : RASSF4
Gene ID             : ENSG00000107551.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RASSF4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RASSF4ENSG00000107551.203.957.295.62ENCSR000AEF
HepG2RASSF4ENSG00000107551.2038.8924.8031.84ENCSR985KAT
K562RASSF4ENSG00000107551.200.060.070.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RASSF4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RASSF4 RNA is bound by 18 proteins.  







eCLIP assay for RASSF4 is not avaliable on ENCORE database.





18 proteins are bound to RASSF4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr104548886545488998+3'-UTR4.990796.12579HepG2PABPN1
chr104548513145485200+3'-UTR,CDS,intron-Proximal4.3584311.83008HepG2PRPF8
chr104548473745484814+3'-UTR,CDS3.903394.96634HepG2PPIG
chr104547797745478049+3'-UTR,CDS3.207236.30096HepG2PPIG
chr104548481345484863+3'-UTR,CDS,intron-Proximal5.2172616.83003HepG2PRPF8
chr104548734645487485+3'-UTR,CDS,intron-Proximal4.550983.93614HepG2AQR
chr104548890245488984+3'-UTR3.457943.97153HepG2UPF1
chr104548471945484784+3'-UTR,CDS,intron-Proximal3.259093.28107HepG2PABPN1
chr104548736445487420+3'-UTR,CDS4.023405.94293HepG2BCLAF1
chr104548511845485173+3'-UTR,CDS,intron-Proximal3.535265.58370HepG2PPIG
chr104548873045488770+3'-UTR,CDS3.313733.59112HepG2PPIG
chr104548646445486519+3'-UTR,CDS,intron-Proximal3.891856.98305HepG2PPIG
chr104547946745479552+3'-UTR,CDS,intron-Distal,intron-Proximal4.259093.99014HepG2PABPN1
chr104547951345479561+3'-UTR,CDS,intron-Distal3.344334.48818HepG2GRWD1
chr104548041345480467+3'-UTR,CDS,intron-Proximal4.257138.31500HepG2PRPF8
chr104548507545485150+3'-UTR,CDS,intron-Proximal5.356636.82887HepG2EFTUD2
chr104548025445480400+3'-UTR,CDS,intron-Proximal3.531567.38586HepG2PPIG
chr104548900845489143+3'-UTR5.021427.21030HepG2UPF1
chr104548744645487507+3'-UTR,CDS,intron-Proximal3.214343.44979HepG2PRPF8
chr104546561245465673+5'-UTR,CDS,intron-Proximal3.214534.79623HepG2UCHL5
chr104546567445465752+CDS,intron-Proximal3.1720112.65150HepG2BUD13
chr104546571045465912+CDS,intron-Distal,intron-Proximal3.9604638.55054HepG2EFTUD2
chr104546565445465775+CDS,intron-Proximal4.1798020.89980HepG2GRWD1
chr104546567345465759+CDS,intron-Proximal3.1725113.72927HepG2PPIG
chr104546567345465737+CDS,intron-Proximal3.945724.11603HepG2UCHL5
chr104546566745465765+CDS,intron-Proximal3.9697219.87657HepG2PRPF8
chr104546585945465950+intron-Distal3.386284.25955HepG2RBFOX2
chr104547752745477639+intron-Distal3.065933.41236HepG2CSTF2T
chr104546731545467364+intron-Distal,intron-Proximal5.124846.92547HepG2RBM22
chr104547063945470684+intron-Distal5.209666.42388HepG2DDX59
chr104546634545466389+intron-Distal3.282963.77546HepG2HNRNPL
chr104546823745468320+intron-Distal3.598476.30183HepG2DDX59
chr104548488345484931+intron-Distal,intron-Proximal3.880855.93840HepG2PRPF8
chr104547093545470973+intron-Distal5.190166.23953HepG2PCBP2
chr104546754245467644+intron-Distal4.637965.87141HepG2HNRNPK
chr104546729845467355+intron-Distal,intron-Proximal4.827995.68502HepG2PRPF8
chr104547100745471078+intron-Distal3.593084.91534HepG2HNRNPK
chr104546730745467365+intron-Distal,intron-Proximal4.462264.42548HepG2TIAL1
chr104546573245465859+intron-Distal,intron-Proximal3.180225.32645HepG2RBFOX2
chr104547119245471203+intron-Distal4.540733.97933HepG2DDX59
chr104547094545471062+intron-Distal5.7218925.77519HepG2DDX59
chr104547097345471054+intron-Distal5.3323918.83078HepG2PCBP2
chr104548487745484931+intron-Distal,intron-Proximal4.585695.61554HepG2EFTUD2
chr104547112845471170+intron-Distal4.2364610.23922HepG2DDX59
chr104547240845472460+intron-Distal3.460163.49516HepG2CSTF2T
chr104547093845471007+intron-Distal5.134518.50262HepG2HNRNPK
chr104546747645467542+intron-Distal3.859763.31570HepG2HNRNPK
chr104547855845478680+intron-Distal3.036484.88448HepG2HNRNPL
chr104547107045471102+intron-Distal4.904697.59655HepG2DDX59
chr104547285845472944+intron-Distal4.509618.54991HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RASSF4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RASSF4 is not available on ENCORE database.

  • 86 RBPs can affect the levels of RASSF4.  








The Knockdown/knockout RNA-Seq assay for RASSF4 is not available on ENCORE database.





86 RBPs can affect the gene expression of RASSF4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RASSF4ENSG00000107551.16954.078601263.98990-0.405803.494202.29890HepG2AATF
RASSF4ENSG00000107551.162060.307401570.039000.392002.662001.73710HepG2ABCF1
RASSF4ENSG00000107551.161119.403001452.78710-0.376105.668704.86060HepG2ACO1
RASSF4ENSG00000107551.16798.294402141.64440-1.4237025.2766023.85370HepG2AKAP1
RASSF4ENSG00000107551.161251.275101772.03290-0.502004.536503.54300HepG2ASCC1
RASSF4ENSG00000107551.161332.507601893.10320-0.506609.160108.03150HepG2AUH
RASSF4ENSG00000107551.161708.158501075.900500.666806.625705.29980HepG2BCLAF1
RASSF4ENSG00000107551.16718.55450943.91900-0.393602.960202.34410HepG2BOP1
RASSF4ENSG00000107551.161762.700601175.990900.583807.163405.25510HepG2BUD13
RASSF4ENSG00000107551.16628.699301018.02490-0.695304.336103.37440HepG2CNOT7
RASSF4ENSG00000107551.16645.57420866.54910-0.424703.022902.30840HepG2CPSF6
RASSF4ENSG00000107551.161093.85290764.784000.516204.534403.19600HepG2CSTF2
RASSF4ENSG00000107551.161602.630101930.15830-0.268304.110803.23580HepG2DAZAP1
RASSF4ENSG00000107551.162158.217001343.675200.6836021.2572019.46480HepG2DDX19B
RASSF4ENSG00000107551.162811.520001394.178901.0118022.4715020.78930HepG2DDX21
RASSF4ENSG00000107551.161995.128501364.630700.547907.817806.29510HepG2DDX24
RASSF4ENSG00000107551.161201.939302051.53750-0.771309.655808.54830HepG2DDX3X
RASSF4ENSG00000107551.16675.13050984.03680-0.543502.499901.57140HepG2DDX59
RASSF4ENSG00000107551.161711.575501092.289400.647906.344704.90530HepG2DHX30
RASSF4ENSG00000107551.162181.322201389.954600.6501015.9111014.57260HepG2DKC1
RASSF4ENSG00000107551.161501.709401122.580700.419705.318004.45750HepG2DNAJC2
RASSF4ENSG00000107551.162161.945501370.444700.657607.930206.45390HepG2EEF2
RASSF4ENSG00000107551.161787.515401316.789900.440805.231603.80090HepG2EIF3G
RASSF4ENSG00000107551.162824.543401872.244700.593105.773604.85160HepG2EIF4A3
RASSF4ENSG00000107551.162633.884701904.130900.468009.531708.15840HepG2EIF4G1
RASSF4ENSG00000107551.161764.191901359.794800.375502.873201.76150HepG2ESF1
RASSF4ENSG00000107551.161875.359202173.53750-0.212902.316901.75820HepG2ETF1
RASSF4ENSG00000107551.161787.296101419.739300.332103.031202.15880HepG2EWSR1
RASSF4ENSG00000107551.161354.759901752.33410-0.371202.552701.91230HepG2G3BP1
RASSF4ENSG00000107551.162946.657101860.317500.663408.592407.00910HepG2G3BP2
RASSF4ENSG00000107551.161233.86360990.409500.317002.091701.31740HepG2GEMIN5
RASSF4ENSG00000107551.163051.81620982.246201.6354038.7506036.67920HepG2GPKOW
RASSF4ENSG00000107551.161739.733601387.068700.326704.458503.23980HepG2HDGF
RASSF4ENSG00000107551.162843.526501143.316501.3144037.3929035.55940HepG2HNRNPA1
RASSF4ENSG00000107551.161172.076401774.37960-0.598206.941205.87200HepG2HNRNPK
RASSF4ENSG00000107551.161545.800401758.25770-0.185802.132901.53100HepG2HNRNPL
RASSF4ENSG00000107551.162217.25850937.380601.2420025.4892023.89620HepG2HNRNPLL
RASSF4ENSG00000107551.16770.255101263.35540-0.7139011.9737010.78650HepG2HNRNPU
RASSF4ENSG00000107551.161735.858001394.066200.316203.164602.39430HepG2IGF2BP1
RASSF4ENSG00000107551.162197.724601781.211900.303102.038001.44940HepG2IGF2BP2
RASSF4ENSG00000107551.162355.899701791.589900.394902.465501.52910HepG2KHSRP
RASSF4ENSG00000107551.161007.497201345.33310-0.417204.096002.70610HepG2LARP7
RASSF4ENSG00000107551.162454.364901889.661700.377102.962502.28500HepG2MAGOH
RASSF4ENSG00000107551.161566.39560956.126000.712105.253603.89240HepG2MTPAP
RASSF4ENSG00000107551.162180.65540831.206901.3914024.3483022.45340HepG2NSUN2
RASSF4ENSG00000107551.161461.282601860.72140-0.348605.192804.40280HepG2PCBP1
RASSF4ENSG00000107551.161899.668301126.805400.7534017.3782015.63750HepG2PPIL4
RASSF4ENSG00000107551.161596.81120939.040200.765808.826407.47180HepG2PRPF8
RASSF4ENSG00000107551.161654.968501893.32650-0.194101.811901.35100HepG2PTBP1
RASSF4ENSG00000107551.162360.130701826.990300.369303.709403.03050HepG2PUF60
RASSF4ENSG00000107551.161298.519401939.39730-0.5787015.9703014.78580HepG2PUM1
RASSF4ENSG00000107551.161413.397601938.00150-0.455406.187905.19850HepG2PUM2
RASSF4ENSG00000107551.161847.926201479.775500.320404.857404.08250HepG2PUS1
RASSF4ENSG00000107551.161005.062601424.76580-0.503402.400801.74120HepG2RAVER1
RASSF4ENSG00000107551.16868.640601816.67480-1.0645029.9275028.58750HepG2RBM22
RASSF4ENSG00000107551.161439.329401861.00880-0.370703.824103.04050HepG2RBM25
RASSF4ENSG00000107551.161261.026601622.28690-0.363403.036201.99680HepG2RBM27
RASSF4ENSG00000107551.162417.092002107.113200.197902.046001.56560HepG2NELFE
RASSF4ENSG00000107551.161958.040201525.025100.360503.324802.58670HepG2RPLP0
RASSF4ENSG00000107551.161493.126101082.512000.463904.941304.14700HepG2RPS19
RASSF4ENSG00000107551.161933.558501496.120100.369902.780301.97840HepG2RPS2
RASSF4ENSG00000107551.161899.286701022.663500.893009.267907.83700HepG2RPS3A
RASSF4ENSG00000107551.161539.433001086.301000.502904.754603.53630HepG2SERBP1
RASSF4ENSG00000107551.16693.62320927.79010-0.419603.152902.40150HepG2SF3B1
RASSF4ENSG00000107551.161453.229601971.24590-0.439807.701806.79310HepG2SF3B4
RASSF4ENSG00000107551.162329.053301751.729900.410908.849107.70650HepG2SLBP
RASSF4ENSG00000107551.16693.909401032.34050-0.573102.296701.58680HepG2SNRNP70
RASSF4ENSG00000107551.161025.748802051.86670-1.0003037.0841035.79890HepG2SRFBP1
RASSF4ENSG00000107551.16467.96830998.39510-1.0932011.588009.45000HepG2SRSF3
RASSF4ENSG00000107551.161544.266701803.84650-0.224202.444201.85150HepG2SRSF5
RASSF4ENSG00000107551.162460.606101781.505000.4658010.043409.18340HepG2SSB
RASSF4ENSG00000107551.161779.479702051.50490-0.205202.569301.96530HepG2SUCLG1
RASSF4ENSG00000107551.161501.418801070.141600.488405.187503.92160HepG2SUPT6H
RASSF4ENSG00000107551.162100.271801211.964600.793108.890807.79110HepG2SUPV3L1
RASSF4ENSG00000107551.161407.244201849.33680-0.394105.315304.57970HepG2TAF15
RASSF4ENSG00000107551.161611.649001227.442700.392804.527803.92090HepG2TIAL1
RASSF4ENSG00000107551.161621.035801238.568800.388105.926305.15660HepG2TRIM56
RASSF4ENSG00000107551.16905.338001355.89420-0.582706.152905.23270HepG2U2AF1
RASSF4ENSG00000107551.161732.133401109.657000.642304.590203.27810HepG2UPF2
RASSF4ENSG00000107551.161930.951501615.133700.257602.882301.81600HepG2UTP18
RASSF4ENSG00000107551.161240.610001517.04280-0.290203.435302.78080HepG2UTP3
RASSF4ENSG00000107551.162714.809701193.047701.1861022.4682020.49080HepG2XRN2
RASSF4ENSG00000107551.162487.213501728.143300.525207.684906.89130HepG2ZNF622
RASSF4ENSG00000107551.1613.594100.686404.307702.416601.70770K562GRSF1
RASSF4ENSG00000107551.168.206300.0000099999.999902.191401.65150K562HNRNPC
RASSF4ENSG00000107551.160.9323011.13740-3.578502.305301.44280K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RASSF4 is not available on ENCORE database.





23 RBPs can affect the splicing of RASSF4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERASSF4ENSG00000107551.16chr10+454794384547956145477968454781114548026045480418-0.121000.006500.09293excludedHepG2U2AF1
SERASSF4ENSG00000107551.16chr10+454794694547956145477968454781114548026045480418-0.129000.002430.05472excludedHepG2HNRNPK
SERASSF4ENSG00000107551.16chr10+4547946945479561454672204546729645480260454804180.169000.005550.05769includedHepG2U2AF2
SERASSF4ENSG00000107551.16chr10+454779684547811145465612454672964547946945479561-0.114000.000050.00223excludedHepG2SRSF1
A3SSRASSF4ENSG00000107551.16chr10+4547938845479561454794694547956145477968454781110.201000.000200.04468longerHepG2PRPF8
A5SSRASSF4ENSG00000107551.16chr10+4547946945479701454794694547956145480260454804180.145000.000110.01086longerHepG2HNRNPK
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.111000.000000.00021includedHepG2TIA1
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.157000.000000.00010includedHepG2PRPF8
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.052000.003360.05836includedHepG2IGF2BP3
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.086000.000050.00325includedHepG2MATR3
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.129000.000000.00000includedHepG2QKI
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.058000.005680.04899includedHepG2TAF15
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.123000.000000.00002includedHepG2G3BP1
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.145000.000000.00000includedHepG2KHSRP
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.117000.000090.03687includedHepG2BCLAF1
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.092000.000110.00145includedHepG2SF3B4
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.239000.000000.00000includedHepG2FUBP3
RIRASSF4ENSG00000107551.16chr10+454656124546729645465612454657124546722045467296-0.095000.000360.00544excludedHepG2RBM22
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.064000.001770.02936includedHepG2SRSF9
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.232000.000000.00000includedHepG2HNRNPK
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.135000.000140.07124includedHepG2GTF2F1
RIRASSF4ENSG00000107551.16chr10+4546561245467296454656124546571245467220454672960.121000.000000.00005includedHepG2PTBP1
MXERASSF4ENSG00000107551.16chr10+4547796845478111454794694547956145465612454672964548026045480418-0.162000.002510.060222includedHepG2MATR3
MXERASSF4ENSG00000107551.16chr10+4547796845478111454794694547956145465612454672964548026045480418-0.170000.001250.097622includedHepG2KHSRP
MXERASSF4ENSG00000107551.16chr10+4547796845478111454794384547956145465612454672964548026045480418-0.305000.000060.001692includedHepG2SFPQ
MXERASSF4ENSG00000107551.16chr10+4547796845478111454794694547956145465612454672964548026045480418-0.293000.000220.004852includedHepG2SFPQ
MXERASSF4ENSG00000107551.16chr10+4547796845478111454794694547956145465612454672964548026045480418-0.255000.002960.019922includedHepG2U2AF2
MXERASSF4ENSG00000107551.16chr10+4547796845478111454793434547956145465612454672964548026045480418-0.147000.002050.057952includedHepG2PCBP1
MXERASSF4ENSG00000107551.16chr10+4547796845478111454794694547956145465612454672964548026045480418-0.151000.001940.055842includedHepG2PCBP1
MXERASSF4ENSG00000107551.16chr10+4547796845478111454794694547956145465612454672964548026045480418-0.253000.001040.019652includedHepG2HNRNPUL1
MXERASSF4ENSG00000107551.16chr10+4547796845478111454794694547956145465612454672964548026045480418-0.180000.001390.039972includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RASSF4 is not avaliable on ENCORE database.