PKP3

General Information

Gene Name       : PKP3
Gene ID             : ENSG00000184363.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PKP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PKP3ENSG00000184363.90.000.000.00ENCSR000AEF
HepG2PKP3ENSG00000184363.922.956.1714.56ENCSR985KAT
K562PKP3ENSG00000184363.928.6818.0723.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PKP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PKP3 RNA is bound by 36 proteins.  







eCLIP assay for PKP3 is not avaliable on ENCORE database.





36 proteins are bound to PKP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11404748404891+3'-UTR4.8063747.39649K562DDX6
chr11404827404889+3'-UTR3.598083.92090HepG2GRSF1
chr11404823404870+3'-UTR4.059696.01031K562ZC3H11A
chr11404738404831+3'-UTR4.8169111.33190K562APOBEC3C
chr11404764404864+3'-UTR3.324144.25147HepG2LSM11
chr11404805404824+3'-UTR4.4647614.58686K562PABPC4
chr11404755404805+3'-UTR4.105989.52223K562PABPC4
chr11404760404878+3'-UTR3.3133411.09146K562GTF2F1
chr11404736404871+3'-UTR3.279296.46594HepG2LARP4
chr11404758404846+3'-UTR4.1338012.54198K562DDX24
chr11404746404811+3'-UTR3.513833.38753K562FAM120A
chr11404748404827+3'-UTR3.832823.65894HepG2GRSF1
chr11404755404868+3'-UTR3.366364.54072K562AKAP8L
chr11404831404882+3'-UTR5.132907.23527K562APOBEC3C
chr11404590404672+3'-UTR3.735093.02525HepG2GRSF1
chr11404824404882+3'-UTR5.7560158.03623K562PABPC4
chr11404756404815+3'-UTR3.833985.69086K562LARP4
chr11404818404887+3'-UTR3.139964.46520HepG2CSTF2T
chr11404707404876+3'-UTR3.468958.47743K562UPF1
chr11404576404656+3'-UTR3.7712711.38797K562DDX6
chr11404740404860+3'-UTR3.281326.29989K562FUS
chr11404815404878+3'-UTR4.600237.38575K562LARP4
chr11396818396844+3'-UTR,CDS3.767293.22721K562YBX3
chr11404747404871+3'-UTR3.667595.39860K562XRCC6
chr11396588396656+3'-UTR,CDS,intron-Proximal4.623636.99120K562AQR
chr11404827404874+3'-UTR3.328095.09262K562DDX55
chr11404690404852+3'-UTR5.263009.75816HepG2UPF1
chr11394367394415+5'-UTR,CDS,intron-Proximal4.312796.13654HepG2DDX3X
chr11394307394367+5'-UTR,CDS,intron-Proximal3.310947.76281HepG2DDX3X
chr11400326400384+CDS,intron-Proximal4.239256.83823K562DDX24
chr11403663403741+CDS3.154393.94288K562YBX3
chr11397661397684+CDS,intron-Proximal3.879585.35619K562AQR
chr11400048400093+CDS3.325373.04831K562RBM15
chr11400479400544+CDS,intron-Proximal3.820455.82046K562SF3B4
chr11403130403185+CDS4.834704.75028K562FXR2
chr11399966400041+CDS,intron-Proximal4.317458.92633K562YBX3
chr11397310397425+CDS3.221707.14836K562FXR2
chr11403576403624+CDS,intron-Proximal4.519435.68247K562SF3B4
chr11403599403640+CDS,intron-Proximal4.699634.65563K562AQR
chr11404430404512+CDS,intron-Distal,intron-Proximal4.777286.84460HepG2CSTF2T
chr11398950399016+CDS,intron-Proximal3.707604.88100K562AQR
chr11400598400705+CDS3.601484.77136HepG2PPIG
chr11397324397396+CDS4.134085.82909K562FMR1
chr11399098399180+CDS3.134873.66602K562GRWD1
chr11400139400231+CDS,intron-Proximal4.327296.81564HepG2PRPF8
chr11397542397625+CDS3.854693.25205K562GRWD1
chr11403339403401+intron-Distal,intron-Proximal3.899597.53394K562AQR
chr11398196398245+intron-Distal6.6916023.95024K562AGGF1
chr11397886397943+intron-Distal4.1873813.90511K562AGGF1
chr11398059398135+intron-Distal5.4334227.87987K562AGGF1
chr11398820398941+intron-Distal,intron-Proximal5.3287625.31695K562AGGF1
chr11397943398033+intron-Distal5.5705531.52385K562AGGF1
chr11403338403380+intron-Distal,intron-Proximal5.142923.59565K562DDX24
chr11399546399645+intron-Distal4.740495.41525HepG2PCBP2
chr11395827395952+intron-Distal4.233583.62737K562HNRNPK
chr11395031395086+intron-Distal4.422545.60464K562CSTF2T
chr11403330403396+intron-Distal,intron-Proximal3.912913.84437HepG2PRPF4
chr11394692394749+intron-Distal4.179953.57893K562EWSR1
chr11395566395617+intron-Distal3.429994.22628K562EWSR1
chr11394553394648+intron-Distal,intron-Proximal4.448025.59743K562DROSHA
chr11394681394726+intron-Distal4.734865.63362K562AGGF1
chr11396383396442+intron-Distal,intron-Proximal3.043293.40404K562CSTF2T
chr11395767395923+intron-Distal3.671514.34707HepG2HNRNPK
chr11395665395767+intron-Distal3.423383.94795K562XRN2
chr11403333403399+intron-Distal,intron-Proximal3.662806.55814HepG2PRPF8
chr11394680394757+intron-Distal3.185573.17504K562CSTF2T
chr11403341403395+intron-Distal,intron-Proximal4.018083.93366K562RBFOX2
chr11397933398027+intron-Distal4.681936.66649HepG2HNRNPK
chr11396413396490+intron-Distal,intron-Proximal6.030219.95757K562DROSHA
chr11397708397809+intron-Distal,intron-Proximal3.855893.39667K562HNRNPL
chr11394563394611+intron-Proximal3.263573.04054K562GTF2F1
chr11394569394621+intron-Proximal4.511397.50107K562AQR
chr11394575394611+intron-Proximal3.115313.15535K562EWSR1
chr11400269400322+intron-Proximal3.9750410.42678K562BUD13
chr11394526394569+intron-Proximal5.123635.69951K562AQR
chr11397684397708+intron-Proximal4.123637.30031K562AQR
chr11400158400218+intron-Proximal4.191763.18939HepG2RBFOX2
chr11400271400319+intron-Proximal3.519033.41711K562DROSHA
chr11394567394614+intron-Proximal4.259256.16837K562AGGF1
chr11400452400531+intron-Proximal3.803516.24165HepG2SF3B4
chr11400256400326+intron-Proximal5.824218.91709K562DDX24
chr11399196399238+intron-Proximal3.464894.88100K562AQR
chr11394553394615+intron-Proximal3.882215.72946K562AKAP8L
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PKP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PKP3 is not available on ENCORE database.

  • 95 RBPs can affect the levels of PKP3.  








The Knockdown/knockout RNA-Seq assay for PKP3 is not available on ENCORE database.





95 RBPs can affect the gene expression of PKP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PKP3ENSG00000184363.5747.22020618.018000.273802.103701.42230HepG2AKAP8L
PKP3ENSG00000184363.5170.85020253.95420-0.571802.646101.89150HepG2CALR
PKP3ENSG00000184363.5287.64710184.678900.639204.126502.87790HepG2YBX3
PKP3ENSG00000184363.5500.37080320.471700.642706.219405.32910HepG2CELF1
PKP3ENSG00000184363.5709.16060568.916900.317802.994402.12910HepG2DDX19B
PKP3ENSG00000184363.5130.87840227.93810-0.800402.166701.36940HepG2DDX24
PKP3ENSG00000184363.5868.03900311.923001.4765017.8541016.13960HepG2DDX55
PKP3ENSG00000184363.5936.78020453.112401.047707.298206.33620HepG2DDX6
PKP3ENSG00000184363.5419.06920588.53110-0.489904.463803.64040HepG2DKC1
PKP3ENSG00000184363.5316.27700181.327900.802506.412805.37920HepG2DNAJC21
PKP3ENSG00000184363.5364.71360179.745401.0207012.3771011.10190HepG2DNAJC2
PKP3ENSG00000184363.5512.37660325.658200.653704.914203.84740HepG2EIF4G2
PKP3ENSG00000184363.5471.41350601.08700-0.350602.089401.36450HepG2EWSR1
PKP3ENSG00000184363.5289.55590434.69360-0.586204.047203.10390HepG2FUBP3
PKP3ENSG00000184363.5373.55080235.505500.665402.206501.30200HepG2GNB2L1
PKP3ENSG00000184363.5580.04970313.905000.8857013.3219011.94570HepG2HNRNPL
PKP3ENSG00000184363.5335.69220202.285800.730606.107505.23690HepG2HNRNPU
PKP3ENSG00000184363.5567.33950437.845300.373702.100301.39090HepG2MSI2
PKP3ENSG00000184363.5254.83860367.69020-0.528903.386802.03960HepG2NAA15
PKP3ENSG00000184363.5760.40030499.924700.604902.680602.05630HepG2NCBP2
PKP3ENSG00000184363.5508.88620341.701100.574504.896603.88620HepG2NOL12
PKP3ENSG00000184363.5200.78180116.553600.784502.965501.46240HepG2NOLC1
PKP3ENSG00000184363.5551.47590286.554600.944404.601203.16930HepG2NONO
PKP3ENSG00000184363.5160.43710250.91460-0.645201.977001.33960HepG2NSUN2
PKP3ENSG00000184363.5400.40960180.421701.1500014.1007012.50760HepG2PPIL4
PKP3ENSG00000184363.5189.99610362.04120-0.930209.333808.03460HepG2PRPF4
PKP3ENSG00000184363.5628.53600497.294300.337802.559302.02950HepG2PTBP1
PKP3ENSG00000184363.5713.81660326.180501.1298016.2354014.95540HepG2PUF60
PKP3ENSG00000184363.5503.43220346.251300.539905.450304.67580HepG2PUM1
PKP3ENSG00000184363.5411.81870538.51340-0.387002.334901.75210HepG2QKI
PKP3ENSG00000184363.5492.42580722.68810-0.553504.047603.45170HepG2RBM22
PKP3ENSG00000184363.5385.81410180.140801.098708.520807.48070HepG2SAFB2
PKP3ENSG00000184363.5473.11080312.748600.597105.817604.86260HepG2SLBP
PKP3ENSG00000184363.5406.70750210.068400.953008.110907.10020HepG2SMN1
PKP3ENSG00000184363.5434.85660206.522801.074102.927301.94040HepG2SMNDC1
PKP3ENSG00000184363.576.43630311.58910-2.027309.126307.71320HepG2SNRNP70
PKP3ENSG00000184363.51012.76650816.213000.311202.197001.73410HepG2SRFBP1
PKP3ENSG00000184363.5268.26350540.37960-1.0103013.2687012.39880HepG2SRSF1
PKP3ENSG00000184363.5413.27200322.051300.359702.179001.61630HepG2SRSF5
PKP3ENSG00000184363.5415.83670708.60210-0.769006.362205.64280HepG2SSB
PKP3ENSG00000184363.5554.66580366.264800.598606.358805.48530HepG2SUCLG1
PKP3ENSG00000184363.5158.31590310.47500-0.971706.473105.50520HepG2SUPV3L1
PKP3ENSG00000184363.5218.23950485.77960-1.1544014.8111013.66670HepG2TAF15
PKP3ENSG00000184363.5260.77330196.535200.407901.730601.31530HepG2TIAL1
PKP3ENSG00000184363.5384.13110198.317000.9537010.727209.72530HepG2TRIM56
PKP3ENSG00000184363.5549.00690318.658500.784705.282204.03360HepG2TUFM
PKP3ENSG00000184363.5209.74940462.84620-1.141909.132107.98320HepG2U2AF1
PKP3ENSG00000184363.5656.18940337.291000.960004.950603.80810HepG2UBE2L3
PKP3ENSG00000184363.5599.10820438.326500.450704.370703.52630HepG2UPF1
PKP3ENSG00000184363.5335.96140423.18750-0.333002.113901.57570HepG2UTP3
PKP3ENSG00000184363.5224.22170357.27080-0.672105.585704.68280HepG2ZC3H8
PKP3ENSG00000184363.5879.47820482.075700.8673018.7481017.63800HepG2ZNF622
PKP3ENSG00000184363.51664.917101155.006700.527409.931508.94120K562AGGF1
PKP3ENSG00000184363.51710.695401269.211000.430604.514603.18500K562AKAP8
PKP3ENSG00000184363.52522.436701201.845001.069507.727206.58600K562AKAP8L
PKP3ENSG00000184363.51368.839802100.91520-0.618107.211206.33500K562AQR
PKP3ENSG00000184363.51667.561601261.040200.403005.459104.12290K562ATP5C1
PKP3ENSG00000184363.51303.06240932.907600.482007.289005.70600K562BCLAF1
PKP3ENSG00000184363.5572.07800436.415100.390402.468301.72430K562CPSF6
PKP3ENSG00000184363.51167.79770707.749500.722402.694201.65010K562CSTF2
PKP3ENSG00000184363.52492.393502990.76540-0.263002.249001.36920K562CELF1
PKP3ENSG00000184363.52272.288001450.659500.647308.731906.57830K562DDX21
PKP3ENSG00000184363.51541.116701236.760800.317302.937801.57610K562DDX6
PKP3ENSG00000184363.5629.10650304.134101.0485012.1038010.41700K562EIF3G
PKP3ENSG00000184363.5972.071501274.43490-0.390703.302502.40970K562EIF4A3
PKP3ENSG00000184363.53030.577302431.681200.317502.551201.64420K562EIF4G2
PKP3ENSG00000184363.51312.21240989.615900.407002.904901.60240K562EXOSC5
PKP3ENSG00000184363.5314.47510444.09120-0.497902.874002.00230K562FMR1
PKP3ENSG00000184363.5166.84250268.86030-0.688403.658902.08450K562FUS
PKP3ENSG00000184363.5811.093201325.35800-0.7084013.2106011.98830K562FXR1
PKP3ENSG00000184363.517.77020182.02280-3.3566023.4311020.73550K562G3BP2
PKP3ENSG00000184363.5761.201101060.50270-0.478402.828902.02460K562HSPD1
PKP3ENSG00000184363.51739.212801275.429200.447404.491403.40190K562KIF1C
PKP3ENSG00000184363.5229.19630355.81930-0.634602.959801.99020K562KRR1
PKP3ENSG00000184363.5461.43320852.66580-0.885902.766601.37810K562LARP7
PKP3ENSG00000184363.5827.44330551.143800.586105.307104.13250K562MAGOH
PKP3ENSG00000184363.51512.335201220.922900.308702.236501.30320K562MAK16
PKP3ENSG00000184363.5742.05150549.984600.432002.194601.38230K562MATR3
PKP3ENSG00000184363.5680.016401272.60510-0.9041016.7440013.98250K562NCBP2
PKP3ENSG00000184363.51406.01860702.858301.000202.990301.62890K562NONO
PKP3ENSG00000184363.52448.029601966.813400.315704.313303.40470K562NSUN2
PKP3ENSG00000184363.5709.52710965.48000-0.444402.791601.98620K562POLR2G
PKP3ENSG00000184363.51237.76530888.127200.478803.065602.19580K562PPIG
PKP3ENSG00000184363.5810.24700535.490900.597406.589505.59890K562PTBP1
PKP3ENSG00000184363.51660.257402822.69640-0.765709.099607.09240K562PUM1
PKP3ENSG00000184363.52172.899902764.89400-0.347603.186502.15690K562PUM2
PKP3ENSG00000184363.51552.671801191.842000.381503.024102.46040K562PUS1
PKP3ENSG00000184363.51997.426701161.318900.7823017.8666016.33430K562RBM15
PKP3ENSG00000184363.51308.584501941.01560-0.568807.333306.05590K562SF3A3
PKP3ENSG00000184363.5225.57790396.32170-0.813004.484803.23110K562SF3B1
PKP3ENSG00000184363.5257.61290189.113600.445902.113601.36820K562SF3B4
PKP3ENSG00000184363.5197.78780311.55510-0.655504.532802.26950K562SLTM
PKP3ENSG00000184363.5147.16950279.28290-0.924202.935501.30930K562SND1
PKP3ENSG00000184363.51346.783301988.63700-0.562306.412705.05730K562SRPK2
PKP3ENSG00000184363.5967.81750524.990000.8823011.7420010.29140K562SRSF1
PKP3ENSG00000184363.5870.25430521.737300.738007.353405.51190K562SRSF4
PKP3ENSG00000184363.5843.97840495.888700.767108.812306.84430K562SRSF5
PKP3ENSG00000184363.51536.900201294.407300.247602.672801.52870K562SRSF7
PKP3ENSG00000184363.5738.950901026.29380-0.473903.743402.14090K562SSRP1
PKP3ENSG00000184363.5666.77440968.46950-0.538504.100403.09600K562SYNCRIP
PKP3ENSG00000184363.571.44780178.66360-1.322303.244401.61330K562TAF15
PKP3ENSG00000184363.51178.90170531.258701.1499018.4271016.29360K562TARDBP
PKP3ENSG00000184363.5104.25620189.58620-0.862704.199002.20250K562TBRG4
PKP3ENSG00000184363.51042.58610512.476201.024505.613804.38150K562TIA1
PKP3ENSG00000184363.5874.40190503.046500.797505.382903.74380K562TRA2A
PKP3ENSG00000184363.572.66720182.09790-1.325308.896107.44540K562U2AF2
PKP3ENSG00000184363.51973.778202489.08600-0.334703.353201.92280K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PKP3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of PKP3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PKP3 is not avaliable on ENCORE database.