FGF13

General Information

Gene Name       : FGF13
Gene ID             : ENSG00000129682.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FGF13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FGF13ENSG00000129682.150.220.460.34ENCSR000AEF
HepG2FGF13ENSG00000129682.150.120.370.24ENCSR985KAT
K562FGF13ENSG00000129682.1548.8053.4551.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FGF13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FGF13 RNA is bound by 21 proteins.  







eCLIP assay for FGF13 is not avaliable on ENCORE database.





21 proteins are bound to FGF13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX137714824137714881-3'-UTR,intron-Distal3.2603911.44698K562YBX3
chrX137714275137714332-3'-UTR,intron-Distal4.112533.54514K562TIA1
chrX137714048137714139-3'-UTR,intron-Distal3.162276.91729K562SND1
chrX137713847137713959-3'-UTR,intron-Distal4.158663.25521K562LIN28B
chrX137939737137939791-CDS,intron-Distal3.010013.26789K562YBX3
chrX137919359137919428-intron-Distal3.911703.65589K562SAFB2
chrX138243792138243835-intron-Distal4.428794.80466K562EXOSC5
chrX137914351137914425-intron-Distal3.716733.10466K562SAFB2
chrX138071800138071887-intron-Distal4.1737414.45525K562KHSRP
chrX137928366137928416-intron-Distal3.804353.39667K562HNRNPL
chrX138011290138011404-intron-Distal4.5021516.74478K562HNRNPL
chrX138236702138236771-intron-Distal3.441564.34776K562ILF3
chrX138195060138195201-intron-Distal4.869137.69482K562HNRNPL
chrX138276943138277023-intron-Distal3.214713.84859K562NONO
chrX138102951138103047-intron-Distal4.941083.78039K562QKI
chrX137995697137995751-intron-Distal6.2250414.35804K562PTBP1
chrX138033511138033588-intron-Distal4.474195.62258K562KHSRP
chrX138014859138014921-intron-Distal3.399686.23199K562HNRNPL
chrX137975384137975413-intron-Distal4.873096.73731K562EXOSC5
chrX137950493137950599-intron-Distal3.069213.90817K562AGGF1
chrX138136987138137082-intron-Distal4.822188.16758K562HNRNPL
chrX138038401138038471-intron-Distal4.343323.42734K562PTBP1
chrX138033717138033882-intron-Distal3.3931810.91514K562KHSRP
chrX137982020137982159-intron-Distal3.310264.70733K562HNRNPL
chrX138266759138266820-intron-Distal4.050573.22972K562TARDBP
chrX138182129138182227-intron-Distal4.447355.71021K562TARDBP
chrX138285790138285886-intron-Distal5.289608.89278K562TARDBP
chrX138095099138095157-intron-Distal4.288733.59909K562EXOSC5
chrX138020102138020240-intron-Distal4.741405.32928K562MATR3
chrX138021500138021578-intron-Distal3.450925.25672K562KHDRBS1
chrX137920828137920894-intron-Distal4.073754.37667K562SAFB2
chrX138093466138093516-intron-Distal4.461533.30687K562EXOSC5
chrX137939524137939632-intron-Distal,intron-Proximal3.695865.17284K562TIA1
chrX138277221138277308-intron-Distal4.223703.31905K562NONO
chrX137935693137935763-intron-Distal4.721617.26730K562HNRNPL
chrX138240837138240967-intron-Distal3.878483.06015K562MATR3
chrX138066558138066659-intron-Distal6.2521014.44506K562MATR3
chrX138105580138105659-intron-Distal3.396925.96357K562PTBP1
chrX138066555138066648-intron-Distal6.7502145.02242K562PTBP1
chrX138220531138220591-intron-Distal4.111193.53404K562HNRNPM
chrX138039509138039604-intron-Distal3.321405.39086K562UCHL5
chrX138039190138039291-intron-Distal3.622945.49916K562SAFB2
chrX138039449138039512-intron-Distal4.289113.11168K562ZNF622
chrX138189707138189779-intron-Distal4.874824.30178K562PTBP1
chrX137912785137912936-intron-Distal3.666275.99369K562HNRNPL
chrX138063258138063381-intron-Distal4.678854.47026K562MATR3
chrX138063439138063510-intron-Distal5.6197912.91978K562TARDBP
chrX138133791138133920-intron-Distal3.058983.06830K562SAFB2
chrX137918851137918918-intron-Distal4.343125.62266K562SAFB2
chrX138034002138034074-intron-Distal4.682274.80399K562EXOSC5
chrX138045389138045445-intron-Distal5.564935.08739K562XRCC6
chrX138162149138162242-intron-Distal4.278413.60944K562TARDBP
chrX138059819138059899-intron-Distal3.263876.52166K562PTBP1
chrX138020358138020497-intron-Distal3.758765.60995K562MATR3
chrX138014739138014789-intron-Distal3.010236.29416K562HNRNPL
chrX137920668137920762-intron-Distal4.111724.79322K562SAFB2
chrX138189651138189755-intron-Distal4.164773.33944K562MATR3
chrX138004986138005074-intron-Distal4.078864.13603K562TARDBP
chrX138066800138066886-intron-Distal3.981714.24981K562MATR3
chrX137920933137921030-intron-Distal3.417783.75707K562SAFB2
chrX138014789138014852-intron-Distal3.508897.49133K562HNRNPL
chrX138046244138046372-intron-Distal4.743305.05386K562PTBP1
chrX138177425138177511-intron-Distal4.146904.13641K562TARDBP
chrX137749880137749932-intron-Distal6.6807717.68908K562DGCR8
chrX137917573137917672-intron-Distal4.067223.54264K562SAFB2
chrX137878048137878173-intron-Distal3.826153.12651K562SAFB2
chrX138211230138211317-intron-Distal4.112423.46495K562TARDBP
chrX137906166137906239-intron-Distal3.594574.41421K562PTBP1
chrX138195036138195104-intron-Distal4.183453.52630K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FGF13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FGF13 is not available on ENCORE database.

  • 44 RBPs can affect the levels of FGF13.  








The Knockdown/knockout RNA-Seq assay for FGF13 is not available on ENCORE database.





44 RBPs can affect the gene expression of FGF13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FGF13ENSG00000129682.91006.881301665.41240-0.7260010.542809.16050K562AKAP8L
FGF13ENSG00000129682.91139.999101603.59140-0.492304.800504.06560K562AQR
FGF13ENSG00000129682.9781.87190958.18950-0.293402.635901.70130K562BCLAF1
FGF13ENSG00000129682.91177.163101944.92270-0.7244017.2897014.65590K562CPEB4
FGF13ENSG00000129682.91080.022001624.18620-0.588704.404303.41730K562CPSF6
FGF13ENSG00000129682.9658.86180840.25270-0.350803.315101.85220K562DDX27
FGF13ENSG00000129682.9727.12510929.92190-0.354902.697801.66840K562DDX3X
FGF13ENSG00000129682.91280.672202012.34090-0.6520015.7287014.29040K562DDX47
FGF13ENSG00000129682.9666.48850887.92790-0.413902.995602.04560K562EFTUD2
FGF13ENSG00000129682.9746.353801098.89820-0.558108.062706.93280K562EIF2S2
FGF13ENSG00000129682.9375.19500624.11870-0.734203.687402.50840K562EIF3A
FGF13ENSG00000129682.9712.23890950.55110-0.416402.648601.63760K562EIF3D
FGF13ENSG00000129682.9635.85070853.77740-0.425204.074903.11920K562EIF3G
FGF13ENSG00000129682.91710.449802019.09360-0.239302.268901.41490K562EIF4G2
FGF13ENSG00000129682.9605.41650848.09720-0.486304.795503.01000K562EWSR1
FGF13ENSG00000129682.91217.820801652.43240-0.440303.528502.55840K562FMR1
FGF13ENSG00000129682.9986.660001400.52540-0.505304.385403.21020K562FTO
FGF13ENSG00000129682.9632.450001010.39400-0.6759010.275309.19410K562FXR1
FGF13ENSG00000129682.9712.217801193.49590-0.7448010.482809.38040K562HNRNPC
FGF13ENSG00000129682.91438.185701818.65680-0.338603.161402.02600K562HNRNPL
FGF13ENSG00000129682.9667.036101239.10310-0.893504.428203.23080K562HNRNPM
FGF13ENSG00000129682.91626.558201327.718500.292803.029802.09770K562HNRNPU
FGF13ENSG00000129682.9738.253101361.45810-0.8830015.8822013.59020K562MATR3
FGF13ENSG00000129682.91174.518201513.68610-0.366002.555301.71750K562METAP2
FGF13ENSG00000129682.9874.964201317.58840-0.5906011.031809.53370K562MTPAP
FGF13ENSG00000129682.9725.66220970.12950-0.418903.792502.33420K562NCBP2
FGF13ENSG00000129682.9949.279901213.83040-0.354702.866001.87080K562PCBP2
FGF13ENSG00000129682.9800.612901165.36800-0.541605.333203.26700K562PHF6
FGF13ENSG00000129682.9830.578701012.93080-0.286302.112401.41310K562POLR2G
FGF13ENSG00000129682.9572.65080864.05990-0.593505.240804.20850K562PRPF8
FGF13ENSG00000129682.9873.260601070.14670-0.293302.103201.32600K562PSIP1
FGF13ENSG00000129682.9730.256901325.39600-0.8599015.4922013.98610K562PTBP1
FGF13ENSG00000129682.91813.699902202.98040-0.280502.580801.79320K562PUF60
FGF13ENSG00000129682.91378.693302343.23760-0.7652016.4980013.80590K562PUM1
FGF13ENSG00000129682.91538.286602295.88610-0.5777011.337509.39110K562PUM2
FGF13ENSG00000129682.9897.658001270.98170-0.501705.028803.85640K562RBM22
FGF13ENSG00000129682.9248.08050880.03290-1.8267030.5967027.95560K562RPS19
FGF13ENSG00000129682.9975.095701241.44450-0.348402.250401.35760K562RPS3
FGF13ENSG00000129682.9511.777701474.61490-1.5267021.4600018.76830K562SF3B1
FGF13ENSG00000129682.9527.128101299.31240-1.3015030.0356027.72150K562SRSF1
FGF13ENSG00000129682.91177.64050880.681100.419104.798103.04540K562SSB
FGF13ENSG00000129682.9633.48230836.40130-0.400902.482001.52430K562SUPV3L1
FGF13ENSG00000129682.9811.146001084.77130-0.419403.360901.58680K562TBRG4
FGF13ENSG00000129682.9743.714501029.27140-0.468803.554302.49010K562TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FGF13 is not available on ENCORE database.





3 RBPs can affect the splicing of FGF13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFGF13ENSG00000129682.9chrX-137939673137939841137790979137791090138286220138286269-0.155000.001010.01719excludedK562PUS1
SEFGF13ENSG00000129682.9chrX-1379396731379398411377909791377910901382862201382864330.222000.000050.00626includedK562HNRNPL
SEFGF13ENSG00000129682.9chrX-1379396731379398411377909791377910901382862201382864330.245000.000020.00884includedK562SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FGF13 is not avaliable on ENCORE database.