CTC-338M12.9

General Information

Gene Name : CTC-338M12.9
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTC-338M12.9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

Proteins bound to RNA

CTC-338M12.9 RNA is bound by 8 proteins.

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

8 proteins are bound to CTC-338M12.9 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	180709586	180709628	+	intron-Distal	4.31089	4.72743	K562	NONO
chr5	180709460	180709522	+	intron-Distal	5.69745	13.69120	K562	EWSR1
chr5	180710060	180710143	+	intron-Distal	4.33032	10.26462	K562	CSTF2T
chr5	180709472	180709514	+	intron-Distal	4.70066	4.59460	K562	AKAP8L
chr5	180709592	180709629	+	intron-Distal	3.83886	4.23488	K562	FAM120A
chr5	180709136	180709174	+	intron-Distal	4.52062	3.17679	K562	DDX52
chr5	180709317	180709386	+	intron-Distal	4.40427	10.03192	K562	CSTF2T
chr5	180709139	180709191	+	intron-Distal	3.79589	3.31905	K562	NONO
chr5	180709580	180709637	+	intron-Distal	6.18686	15.52065	K562	GTF2F1
chr5	180708873	180708979	+	intron-Distal	4.67322	12.70249	K562	CSTF2T
chr5	180709464	180709517	+	intron-Distal	4.80656	5.11753	HepG2	CSTF2T
chr5	180709311	180709376	+	intron-Distal	3.89068	6.29987	K562	EWSR1
chr5	180709261	180709295	+	intron-Distal	4.18757	6.63735	K562	GTF2F1
chr5	180708863	180708945	+	intron-Distal	4.74027	3.40229	HepG2	CSTF2T
chr5	180710046	180710135	+	intron-Distal	3.54843	5.51539	K562	EWSR1
chr5	180709767	180709813	+	intron-Distal	3.16374	4.67846	K562	EWSR1
chr5	180709469	180709520	+	intron-Distal	7.15263	25.88746	K562	GTF2F1
chr5	180709253	180709301	+	intron-Distal	3.35015	3.37274	K562	AKAP8L
chr5	180709578	180709638	+	intron-Distal	4.00926	5.82242	K562	EWSR1
chr5	180708875	180708942	+	intron-Distal	5.90363	14.89609	K562	GTF2F1
chr5	180709475	180709515	+	intron-Distal	4.52432	4.96496	K562	NONO
chr5	180709105	180709194	+	intron-Distal	4.77055	3.40229	HepG2	CSTF2T
chr5	180709312	180709379	+	intron-Distal	5.05031	13.41992	K562	GTF2F1
chr5	180709116	180709202	+	intron-Distal	4.40685	6.60022	K562	EWSR1
chr5	180709772	180709812	+	intron-Distal	3.94175	3.07008	K562	NONO
chr5	180709109	180709208	+	intron-Distal	4.31653	9.24802	K562	CSTF2T
chr5	180708877	180708951	+	intron-Distal	3.92999	5.40390	K562	EWSR1
chr5	180709326	180709375	+	intron-Distal	4.64071	4.01524	K562	FAM120A
chr5	180709472	180709520	+	intron-Distal	4.49274	16.07176	K562	CSTF2T
chr5	180708915	180708971	+	intron-Distal	4.92271	3.62726	K562	DROSHA
chr5	180709323	180709366	+	intron-Distal	4.08788	3.60290	K562	AKAP8L
chr5	180709770	180709824	+	intron-Distal	4.28231	8.67848	K562	CSTF2T
chr5	180709116	180709194	+	intron-Distal	5.77887	12.42155	K562	GTF2F1
chr5	180709469	180709520	+	intron-Distal	4.73185	8.21878	K562	FAM120A
chr5	180709588	180709644	+	intron-Distal	5.39808	10.24558	K562	CSTF2T
chr5	180708674	180708703	+	intron-Proximal	4.06729	3.80512	K562	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTC-338M12.9 is not available on ENCORE database.
32 RBPs can affect the levels of CTC-338M12.9.

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not available on ENCORE database.

32 RBPs can affect the gene expression of CTC-338M12.9 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTC-338M12.9	ENSG00000248103.1	42.83540	94.87360	-1.14720	3.48650	2.14530	K562	AARS
CTC-338M12.9	ENSG00000248103.1	114.14720	220.84280	-0.95210	5.85510	5.07800	K562	AGGF1
CTC-338M12.9	ENSG00000248103.1	111.97560	242.66210	-1.11580	7.96830	6.06180	K562	AKAP8
CTC-338M12.9	ENSG00000248103.1	111.81490	229.79430	-1.03920	6.56550	5.52750	K562	AKAP8L
CTC-338M12.9	ENSG00000248103.1	105.76390	241.10450	-1.18880	9.50700	7.68490	K562	ATP5C1
CTC-338M12.9	ENSG00000248103.1	99.63520	263.92800	-1.40540	12.66050	10.14830	K562	CCDC124
CTC-338M12.9	ENSG00000248103.1	33.24890	87.66980	-1.39880	4.25370	1.58720	K562	DDX55
CTC-338M12.9	ENSG00000248103.1	97.65230	247.29180	-1.34050	11.79390	9.73270	K562	DKC1
CTC-338M12.9	ENSG00000248103.1	331.63310	235.65720	0.49280	2.81540	1.87040	K562	EIF4G2
CTC-338M12.9	ENSG00000248103.1	36.20880	90.08460	-1.31490	4.16920	2.74220	K562	FKBP4
CTC-338M12.9	ENSG00000248103.1	4.99960	59.95620	-3.58400	10.59860	9.03870	K562	G3BP2
CTC-338M12.9	ENSG00000248103.1	74.97580	148.68000	-0.98770	4.07020	3.11120	K562	HSPD1
CTC-338M12.9	ENSG00000248103.1	121.93680	243.87850	-1.00000	6.48540	5.09880	K562	KIF1C
CTC-338M12.9	ENSG00000248103.1	68.46040	233.44420	-1.76970	12.45610	9.66110	K562	MAK16
CTC-338M12.9	ENSG00000248103.1	116.51970	273.20430	-1.22940	9.20160	7.35280	K562	MBNL1
CTC-338M12.9	ENSG00000248103.1	84.93000	191.49560	-1.17300	5.27030	3.91630	K562	NAA15
CTC-338M12.9	ENSG00000248103.1	57.00350	105.72340	-0.89120	2.80230	1.49830	K562	NONO
CTC-338M12.9	ENSG00000248103.1	134.64620	59.39690	1.18060	5.09080	3.75600	K562	PCBP2
CTC-338M12.9	ENSG00000248103.1	48.25960	104.33340	-1.11230	3.54590	2.69650	K562	PRPF8
CTC-338M12.9	ENSG00000248103.1	113.73260	64.88010	0.80970	2.97210	2.28570	K562	PTBP1
CTC-338M12.9	ENSG00000248103.1	80.13560	227.91200	-1.50800	10.80590	9.78040	K562	PUS1
CTC-338M12.9	ENSG00000248103.1	19.23710	57.20670	-1.57230	2.88760	1.43620	K562	RAVER1
CTC-338M12.9	ENSG00000248103.1	67.97690	222.05010	-1.70780	13.90250	12.56700	K562	RBM15
CTC-338M12.9	ENSG00000248103.1	115.16890	62.16870	0.88940	3.30160	2.37710	K562	RBM22
CTC-338M12.9	ENSG00000248103.1	116.46060	60.63590	0.94150	3.44380	1.84060	K562	RBM34
CTC-338M12.9	ENSG00000248103.1	59.69220	106.25110	-0.83190	2.28450	1.54550	K562	RPS19
CTC-338M12.9	ENSG00000248103.1	50.03170	106.65020	-1.09200	3.41200	1.92760	K562	RRP9
CTC-338M12.9	ENSG00000248103.1	15.24290	58.85460	-1.94900	4.76690	2.64900	K562	TAF15
CTC-338M12.9	ENSG00000248103.1	105.57910	62.08880	0.76580	2.33120	1.58790	K562	TIA1
CTC-338M12.9	ENSG00000248103.1	25.48170	58.12340	-1.18970	2.58560	1.53240	K562	U2AF1
CTC-338M12.9	ENSG00000248103.1	20.54110	60.02670	-1.54710	4.26620	3.27290	K562	U2AF2
CTC-338M12.9	ENSG00000248103.1	120.05820	231.05970	-0.94450	4.04680	2.38310	K562	UTP18
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not available on ENCORE database.

3 RBPs can affect the splicing of CTC-338M12.9 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTC-338M12.9	ENSG00000248103.1	chr5	+	180710157	180710243	180708375	180708613	180710342	180710653	-0.23100	0.00132	0.09371	excluded	K562	XRCC6
SE	CTC-338M12.9	ENSG00000248103.1	chr5	+	180710157	180710243	180708375	180708613	180710342	180710653	0.15800	0.00030	0.02557	included	K562	HNRNPL
SE	CTC-338M12.9	ENSG00000248103.1	chr5	+	180710157	180710243	180708375	180708613	180710342	180710653	0.16000	0.00000	0.00017	included	K562	SBDS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTC-338M12.9

General Information

Functions

Localization

Domains (AlphaFold: CTC-338M12.9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

8 proteins are bound to CTC-338M12.9 RNA:

eCLIP assay for CTC-338M12.9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not available on ENCORE database.

32 RBPs can affect the gene expression of CTC-338M12.9 :

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not available on ENCORE database.

3 RBPs can affect the splicing of CTC-338M12.9 :

The Knockdown/knockout RNA-Seq assay for CTC-338M12.9 is not avaliable on ENCORE database.