DDX3Y

General Information

Gene Name       : DDX3Y
Gene ID             : ENSG00000067048.16
Essential Gene : Yes

Functions

Localization(RBPImage: DDX3Y)

Domains (AlphaFold: DDX3Y)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DDX3YENSG00000067048.160.000.000.00ENCSR000AEF
HepG2DDX3YENSG00000067048.1652.0778.2865.17ENCSR985KAT
K562DDX3YENSG00000067048.160.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
DDX3YK562shRNABGKLV21-5,BGKLV21-6BGKLV21-1,BGKLV21-2NotSatisfiedENCODE3
DDX3YHepG2shRNABGHLV20-13,BGHLV20-14BGHLV20-1,BGHLV20-221.1,33.5NotSatisfiedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    DDX3Y: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Cytoplasm
  • Cytosolic












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








    RNA Targets

    • eCLIP assay for DDX3Y is not avaliable on ENCORE database.



    Proteins bound to RNA
    • DDX3Y RNA is bound by 20 proteins.  







    eCLIP assay for DDX3Y is not avaliable on ENCORE database.





    20 proteins are bound to DDX3Y RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chrY1503230515032366+3'-UTR3.990189.84040HepG2ZC3H11A
    chrY1502995415030040+3'-UTR,CDS,intron-Proximal4.1766622.37530HepG2BCLAF1
    chrY1503213315032201+3'-UTR3.373403.18660HepG2PABPN1
    chrY1503213915032357+3'-UTR3.626826.77187HepG2DDX55
    chrY1503215015032237+3'-UTR3.368527.90018HepG2ZC3H11A
    chrY1503212215032210+3'-UTR3.741699.27539HepG2FUBP3
    chrY1501683315016893+5'-UTR,CDS,intron-Proximal4.0280111.05858HepG2GRWD1
    chrY1502681915026892+CDS3.3839522.53957HepG2BCLAF1
    chrY1502488815024972+CDS3.7990524.68765HepG2BCLAF1
    chrY1502842715028436+CDS,intron-Proximal3.145966.80151HepG2BCLAF1
    chrY1502573415025764+CDS3.6653013.63205HepG2BCLAF1
    chrY1502471815024755+CDS4.3305822.13319HepG2BCLAF1
    chrY1502648915026560+CDS3.7131421.73210HepG2BCLAF1
    chrY1502944515029453+CDS4.562418.85766HepG2BCLAF1
    chrY1502937215029441+CDS3.643798.02027HepG2EIF3H
    chrY1502886515028963+CDS4.985926.42995HepG2ZNF800
    chrY1502384515023876+CDS3.4110510.76374HepG2BCLAF1
    chrY1502889815028968+CDS3.7853515.42098HepG2BCLAF1
    chrY1502463515024723+CDS,intron-Proximal3.3808613.50966HepG2GRWD1
    chrY1501943915019518+CDS,intron-Proximal3.055085.67144HepG2BUD13
    chrY1502463815024665+CDS,intron-Proximal3.4974614.34206HepG2BCLAF1
    chrY1502485115024888+CDS,intron-Proximal3.035739.69173HepG2BCLAF1
    chrY1501944515019496+CDS,intron-Proximal3.447375.08732HepG2PPIG
    chrY1502761115027656+CDS3.1910514.70454HepG2BCLAF1
    chrY1502652615026599+CDS,intron-Proximal3.324638.34351HepG2PRPF8
    chrY1502832915028353+CDS4.0337812.50436HepG2BCLAF1
    chrY1502852515028546+CDS4.3548915.58304HepG2BCLAF1
    chrY1502995515029979+CDS3.181354.90436HepG2HLTF
    chrY1502696415027045+CDS,intron-Proximal3.397383.85647HepG2U2AF1
    chrY1502653715026639+CDS,intron-Proximal3.264604.43181HepG2CDC40
    chrY1502486015024914+CDS,intron-Proximal3.173438.53025HepG2U2AF2
    chrY1502849015028525+CDS3.4303112.67896HepG2BCLAF1
    chrY1502757115027675+CDS3.012224.73304HepG2ZNF800
    chrY1502647515026489+CDS,intron-Proximal3.450888.16183HepG2BCLAF1
    chrY1502492915024970+CDS3.181634.73488HepG2GRWD1
    chrY1502824715028314+CDS3.2377912.39807HepG2BCLAF1
    chrY1502881815028837+CDS,intron-Proximal3.779386.21520HepG2EIF3H
    chrY1502466515024718+CDS3.6250823.60534HepG2BCLAF1
    chrY1502563015025734+CDS4.5153246.56342HepG2BCLAF1
    chrY1502465715024785+CDS3.0690422.29290HepG2PPIG
    chrY1502697415027048+CDS,intron-Proximal4.7316427.52638HepG2U2AF2
    chrY1502932415029372+CDS3.588274.00333HepG2EIF3H
    chrY1502126815021334+CDS,intron-Proximal3.337775.62208HepG2PRPF8
    chrY1502476215024797+CDS,intron-Proximal3.9283412.28745HepG2BCLAF1
    chrY1502885815028898+CDS3.8006212.60692HepG2BCLAF1
    chrY1501944715019493+CDS,intron-Proximal4.068957.11560HepG2GRWD1
    chrY1502995415029985+CDS,intron-Proximal3.064223.53729HepG2EIF3H
    chrY1502710115027138+CDS3.5931111.73537HepG2BCLAF1
    chrY1502881715028838+CDS,intron-Proximal4.6994616.00085HepG2BCLAF1
    chrY1502893515028951+CDS3.969123.31827HepG2GRWD1
    chrY1501715315017348+intron-Distal3.232705.36936HepG2EXOSC5
    chrY1502667715026700+intron-Distal,intron-Proximal3.783828.81620HepG2BCLAF1
    chrY1502729615027368+intron-Distal3.971184.39665HepG2TIA1
    chrY1501741115017474+intron-Distal4.309664.61500HepG2HNRNPM
    chrY1502732015027417+intron-Distal4.862206.68793HepG2KHSRP
    chrY1502730215027347+intron-Distal3.801303.35850HepG2TIAL1
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for DDX3Y is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for DDX3Y is not available on ENCORE database.

    • 83 RBPs can affect the levels of DDX3Y.  








    The Knockdown/knockout RNA-Seq assay for DDX3Y is not available on ENCORE database.





    83 RBPs can affect the gene expression of DDX3Y :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    DDX3YENSG00000067048.123702.512105038.96400-0.444604.288003.13440HepG2ABCF1
    DDX3YENSG00000067048.123504.490604700.75220-0.423709.691408.36120HepG2AKAP8L
    DDX3YENSG00000067048.123750.510204554.97790-0.280402.004601.33210HepG2ASCC1
    DDX3YENSG00000067048.127089.455404920.886100.5267016.1378014.72560HepG2AUH
    DDX3YENSG00000067048.126174.304803439.417600.8440017.8537016.52990HepG2BOP1
    DDX3YENSG00000067048.123738.982704677.74010-0.323207.986606.96910HepG2CKAP4
    DDX3YENSG00000067048.123292.963104327.21520-0.3941010.201408.79890HepG2DDX19B
    DDX3YENSG00000067048.122410.737103631.83820-0.591209.061607.90760HepG2DDX21
    DDX3YENSG00000067048.126971.870304530.012600.621906.730005.80090HepG2DDX6
    DDX3YENSG00000067048.123471.383804476.35550-0.366807.535106.51990HepG2DKC1
    DDX3YENSG00000067048.122426.829703370.66000-0.474009.218407.99110HepG2DNAJC21
    DDX3YENSG00000067048.122235.683603340.73890-0.5795020.5508018.92470HepG2DNAJC2
    DDX3YENSG00000067048.122420.532703863.01740-0.674405.628404.34990HepG2EEF2
    DDX3YENSG00000067048.121803.292203220.79570-0.836806.099404.45310HepG2EFTUD2
    DDX3YENSG00000067048.124676.594203344.227300.483703.785102.47730HepG2AGO1
    DDX3YENSG00000067048.123470.193004812.53390-0.471804.064403.29360HepG2EIF4A3
    DDX3YENSG00000067048.123521.800404685.70280-0.412002.628901.95700HepG2EIF4B
    DDX3YENSG00000067048.124813.589005649.64740-0.231003.180002.54300HepG2ETF1
    DDX3YENSG00000067048.123071.971604571.98830-0.573709.790508.24380HepG2EWSR1
    DDX3YENSG00000067048.123208.185905088.15840-0.665407.960606.73110HepG2FIP1L1
    DDX3YENSG00000067048.124763.699202876.868100.7275014.5921012.84800HepG2FUBP3
    DDX3YENSG00000067048.123463.237804855.68570-0.487605.165804.24010HepG2FXR1
    DDX3YENSG00000067048.121974.432702792.40390-0.500103.947802.86390HepG2GEMIN5
    DDX3YENSG00000067048.122684.816203579.01560-0.414702.981602.32030HepG2GPKOW
    DDX3YENSG00000067048.124775.052006632.89800-0.474103.307301.80550HepG2HNRNPA0
    DDX3YENSG00000067048.122331.749403402.95010-0.545408.110807.08870HepG2HNRNPA1
    DDX3YENSG00000067048.122765.424703785.10070-0.452805.673804.70870HepG2HNRNPC
    DDX3YENSG00000067048.124523.304406794.29720-0.586904.839202.84020HepG2HNRNPD
    DDX3YENSG00000067048.126889.225204561.101400.594908.990207.78770HepG2HNRNPK
    DDX3YENSG00000067048.122940.352103510.65000-0.255702.380801.49790HepG2HNRNPM
    DDX3YENSG00000067048.122556.576503760.07970-0.5566015.9901014.63070HepG2HNRNPU
    DDX3YENSG00000067048.122667.587503119.43900-0.225802.123401.48280HepG2IGF2BP1
    DDX3YENSG00000067048.123384.469903840.80590-0.182502.971002.21330HepG2ILF2
    DDX3YENSG00000067048.123557.916607474.20860-1.0709016.4216013.38020HepG2KHDRBS1
    DDX3YENSG00000067048.124088.297706017.76590-0.557702.491101.70470HepG2LARP4
    DDX3YENSG00000067048.122635.274803543.58560-0.427302.637701.53140HepG2LARP7
    DDX3YENSG00000067048.123075.847504857.38110-0.659208.464807.33100HepG2MAGOH
    DDX3YENSG00000067048.123459.293904884.56070-0.497804.622603.82480HepG2MATR3
    DDX3YENSG00000067048.121852.530403282.42840-0.825304.584503.25120HepG2METAP2
    DDX3YENSG00000067048.123467.696704118.08480-0.248002.235101.50450HepG2MSI2
    DDX3YENSG00000067048.124449.630003457.956400.363702.872301.63660HepG2NAA15
    DDX3YENSG00000067048.123810.504004999.61410-0.391803.260602.57470HepG2NCBP2
    DDX3YENSG00000067048.124694.631703028.705500.632209.669308.33170HepG2NSUN2
    DDX3YENSG00000067048.124950.423806319.91880-0.352403.749201.86530HepG2NUP35
    DDX3YENSG00000067048.123160.668204452.45760-0.494404.997604.03830HepG2PABPC4
    DDX3YENSG00000067048.123126.314803721.90040-0.251603.675802.71430HepG2PARN
    DDX3YENSG00000067048.125882.648504125.663100.511702.926301.85820HepG2PCBP2
    DDX3YENSG00000067048.121980.515202593.47230-0.389002.865001.61220HepG2PKM
    DDX3YENSG00000067048.123847.074002826.570300.444609.782908.46040HepG2PRPF4
    DDX3YENSG00000067048.122289.877604526.88340-0.9832022.4757021.20240HepG2PTBP1
    DDX3YENSG00000067048.123633.040904865.70030-0.421505.562604.75660HepG2PUF60
    DDX3YENSG00000067048.123997.415405161.35550-0.368705.481904.55370HepG2PUM2
    DDX3YENSG00000067048.122808.417604765.68360-0.7629034.2819032.56790HepG2PUS1
    DDX3YENSG00000067048.125660.630204902.124300.207502.408301.81900HepG2QKI
    DDX3YENSG00000067048.121809.320102429.09270-0.425003.352801.44670HepG2RBM14
    DDX3YENSG00000067048.127160.349606165.851800.215602.324301.53000HepG2RBM15
    DDX3YENSG00000067048.122981.728004272.82730-0.519003.045402.00460HepG2RBM27
    DDX3YENSG00000067048.123271.062505037.75180-0.6230011.5402010.58110HepG2NELFE
    DDX3YENSG00000067048.123534.941004692.40690-0.408605.746104.89840HepG2RECQL
    DDX3YENSG00000067048.121795.357403051.38910-0.765207.833506.86240HepG2RPS19
    DDX3YENSG00000067048.122696.952203940.96250-0.547203.686602.76660HepG2RPS2
    DDX3YENSG00000067048.123322.116507876.53200-1.2455019.6308017.58600HepG2RPS3A
    DDX3YENSG00000067048.122913.576404022.56220-0.465302.874801.77800HepG2RPS5
    DDX3YENSG00000067048.124114.914902346.118100.8105012.1595010.69960HepG2RRP9
    DDX3YENSG00000067048.125259.671907482.31320-0.508503.081001.44120HepG2SBDS
    DDX3YENSG00000067048.121954.950803062.89180-0.647804.540803.35110HepG2SERBP1
    DDX3YENSG00000067048.124431.436105650.73440-0.350702.194701.59320HepG2SF3A3
    DDX3YENSG00000067048.123715.599404712.56330-0.342904.053803.36020HepG2SF3B4
    DDX3YENSG00000067048.122072.246003905.02460-0.9141054.9505052.77850HepG2SMN1
    DDX3YENSG00000067048.126921.629903761.530600.879708.670007.29470HepG2SNRNP70
    DDX3YENSG00000067048.128863.800805333.506600.7327038.8121037.50300HepG2SRFBP1
    DDX3YENSG00000067048.125177.533803637.902600.509104.182602.92510HepG2SRSF3
    DDX3YENSG00000067048.123595.295004804.08340-0.4182010.070508.97810HepG2SRSF5
    DDX3YENSG00000067048.125117.345704002.130000.354508.032807.17990HepG2SRSF9
    DDX3YENSG00000067048.124668.028105463.64070-0.227004.303303.55940HepG2SUCLG1
    DDX3YENSG00000067048.122176.240803059.43210-0.491402.399201.76380HepG2SUPV3L1
    DDX3YENSG00000067048.123264.872506545.07200-1.003406.369804.82520HepG2TBRG4
    DDX3YENSG00000067048.121973.966803653.81550-0.8883024.7225023.51170HepG2TIAL1
    DDX3YENSG00000067048.121677.552402492.18700-0.571104.582202.57260HepG2TROVE2
    DDX3YENSG00000067048.122285.744301807.506000.338603.013902.22360HepG2UCHL5
    DDX3YENSG00000067048.124128.102905150.92640-0.319402.617901.59280HepG2UTP18
    DDX3YENSG00000067048.123946.867104838.24700-0.293805.880505.06210HepG2UTP3
    DDX3YENSG00000067048.124321.295607055.03750-0.707206.590304.90810HepG2XPO5
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for DDX3Y is not available on ENCORE database.





    17 RBPs can affect the splicing of DDX3Y :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    A3SSDDX3YENSG00000067048.12chrY+150288181502897215028887150289721502842815028546-0.328000.000010.00115shorterHepG2SRSF1
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.066000.000070.00605excludedHepG2AKAP1
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.088000.001270.07873excludedHepG2HNRNPL
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.066000.000130.01482excludedHepG2DDX3X
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.067000.010100.06111excludedHepG2U2AF2
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.095000.000510.07320excludedHepG2NOL12
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.104000.000530.08801excludedHepG2EIF3D
    RIDDX3YENSG00000067048.12chrY+1502679515027139150267951502689415026978150271390.088000.002260.02624includedHepG2QKI
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.147000.000000.00009excludedHepG2NKRF
    RIDDX3YENSG00000067048.12chrY+1502679515027139150267951502689415026978150271390.139000.000020.00045includedHepG2TAF15
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.096000.001010.04935excludedHepG2HNRNPC
    RIDDX3YENSG00000067048.12chrY+1502679515027139150267951502689415026978150271390.088000.002740.03127includedHepG2NCBP2
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.134000.000000.00038excludedHepG2HNRNPU
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.133000.000000.00214excludedHepG2SUGP2
    RIDDX3YENSG00000067048.12chrY+150267951502713915026795150268941502697815027139-0.084000.002980.09979excludedHepG2LARP4
    MXEDDX3YENSG00000067048.12chrY+15027541150276861502784015027939150270121502713915028172150283540.094000.003810.089971includedHepG2SF3A3
    MXEDDX3YENSG00000067048.12chrY+1502127015021318150237501502388015019447150195051502463815024794-0.091000.001370.044332includedHepG2RBFOX2

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for DDX3Y is not avaliable on ENCORE database.