ENCORE eCLIP:352

SBDS eCLIP in K562

Experiment Information (Status: Released)

	352	352-control
Exp_UID	352	352
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR059CWF	ENCSR038TMA
ENCODE_alias	gene-yeo:352	gene-yeo:352-control
RBP	SBDS	SBDS
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB894TLT	ENCAB894TLT
Antibody	GTX109168	GTX109168
Lot_num	40023	40023
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	142	157

Replicate Information


Rep_UID	352_01	352_02	352_INPUT
Exp UID	352	352	352
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB193BWY	ENCLB786EUD	ENCLB297AJH
ENCODE_alias	gene-yeo:352_01	gene-yeo:352_02	gene-yeo:352_INPUT
Biosample Name	K562_051215	K562_040915	K562_051215
Biosample_ENCODE_Accession	ENCBS489LOC	ENCBS931MQO	ENCBS489LOC
Biosample_ENCODE_Alias	gene-yeo:K562_051215	gene-yeo:K562_040915	gene-yeo:K562_051215
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-05-12	2015-04-09	2015-05-12
Culture_End_Date	2015-06-11	2015-05-08	2015-06-11
Passage	4	5	4

QC Stats

Experiment QC

	352	352-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	352_01	352_02	352_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	352_01	352_02	352_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	504	504	504
i7_barcode	704	704	703

Sequencing Information


Rep_UID	352_01	352_02	352_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/352.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	352	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
352.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	352	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=352)